Wall clock time and date at job start Mon Mar 30 2020 06:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 S 1.81404 * 109.46946 * 2 1 4 4 C 1.81397 * 103.00143 * 180.02562 * 3 2 1 5 5 H 1.09006 * 110.01748 * 53.60019 * 4 3 2 6 6 C 1.54265 * 110.03192 * 292.16960 * 4 3 2 7 7 C 1.54888 * 104.19711 * 217.10414 * 6 4 3 8 8 C 1.54896 * 102.74858 * 37.93903 * 7 6 4 9 9 H 1.08997 * 110.48570 * 80.73199 * 8 7 6 10 10 N 1.46901 * 110.48667 * 203.38236 * 8 7 6 11 11 C 1.46902 * 110.99622 * 269.77140 * 10 8 7 12 12 C 1.52996 * 109.46936 * 180.02562 * 11 10 8 13 13 C 1.53000 * 109.47579 * 180.02562 * 12 11 10 14 14 C 1.50691 * 109.47443 * 180.02562 * 13 12 11 15 15 H 1.08003 * 120.00144 * 359.97438 * 14 13 12 16 16 C 1.37881 * 120.00215 * 180.02562 * 14 13 12 17 17 N 1.31522 * 119.99485 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00422 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47066 * 59.99511 * 18 16 14 20 20 H 1.48496 * 109.47397 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47037 * 299.99723 * 18 16 14 22 22 C 1.53869 * 110.03522 * 175.00172 * 4 3 2 23 23 H 1.09001 * 109.47194 * 299.99756 * 1 2 3 24 24 H 1.08992 * 109.47399 * 59.99928 * 1 2 3 25 25 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47398 * 120.00064 * 2 1 3 27 27 H 1.09001 * 109.47194 * 240.00244 * 2 1 3 28 28 H 1.09009 * 110.48509 * 335.77863 * 6 4 3 29 29 H 1.08995 * 110.49373 * 98.42221 * 6 4 3 30 30 H 1.09000 * 110.75521 * 279.62577 * 7 6 4 31 31 H 1.09008 * 110.76109 * 156.24904 * 7 6 4 32 32 H 1.00893 * 110.99701 * 145.82032 * 10 8 7 33 33 H 1.09001 * 109.47386 * 299.99869 * 11 10 8 34 34 H 1.09002 * 109.46847 * 60.00452 * 11 10 8 35 35 H 1.09000 * 109.47507 * 300.00467 * 12 11 10 36 36 H 1.09001 * 109.47245 * 59.99947 * 12 11 10 37 37 H 1.09003 * 109.46554 * 300.00255 * 13 12 11 38 38 H 1.09001 * 109.47040 * 59.99620 * 13 12 11 39 39 H 0.97001 * 119.99236 * 180.02562 * 17 16 14 40 40 H 1.09004 * 110.02860 * 238.56806 * 22 4 3 41 41 H 1.09000 * 110.03315 * 359.97438 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 6 3.9371 1.5060 -0.0008 5 1 4.2390 0.8601 -0.8254 6 6 4.4011 0.9028 1.3411 7 6 5.7452 1.6149 1.6331 8 6 5.4800 3.0601 1.1428 9 1 4.9299 3.6236 1.8964 10 7 6.7446 3.7328 0.8172 11 6 7.2856 4.4329 1.9900 12 6 8.5993 5.1202 1.6125 13 6 9.1632 5.8488 2.8340 14 6 10.4568 6.5262 2.4620 15 1 10.8390 6.4449 1.4551 16 6 11.1533 7.2491 3.4073 17 7 10.6881 7.3477 4.6336 18 14 12.7572 8.0882 2.9464 19 1 12.5087 9.0671 1.8577 20 1 13.3044 8.7955 4.1320 21 1 13.7334 7.0696 2.4830 22 6 4.6230 2.8775 -0.1268 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 3.6768 1.1181 2.1269 29 1 4.5521 -0.1723 1.2443 30 1 6.5559 1.1574 1.0660 31 1 5.9646 1.6034 2.7008 32 1 6.6278 4.3658 0.0403 33 1 6.5690 5.1810 2.3291 34 1 7.4674 3.7149 2.7897 35 1 9.3161 4.3725 1.2730 36 1 8.4171 5.8381 0.8128 37 1 8.4465 6.5965 3.1738 38 1 9.3455 5.1305 3.6334 39 1 11.1779 7.8565 5.2985 40 1 5.2585 2.8971 -1.0122 41 1 3.8729 3.6660 -0.1880 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300383102.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:58 Heat of formation + Delta-G solvation = -37.760961 kcal Electronic energy + Delta-G solvation = -16549.866604 eV Core-core repulsion = 13975.193019 eV Total energy + Delta-G solvation = -2574.673585 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.61823 -35.32018 -33.20807 -33.07817 -31.00043 -28.96646 -27.66335 -25.38065 -23.75605 -22.38207 -20.85867 -20.43931 -19.71666 -16.81319 -16.29679 -15.97384 -15.56399 -15.24632 -14.94674 -14.49744 -14.33086 -13.63212 -13.59404 -13.11053 -12.76733 -12.33303 -12.28593 -11.97878 -11.80116 -11.57338 -11.30619 -11.26662 -11.08962 -10.94947 -10.79725 -10.67036 -10.51706 -10.45844 -10.01905 -9.66258 -9.30133 -9.03445 -8.31492 -8.17101 -7.89999 -5.96819 -3.98866 1.42642 2.31754 3.35654 3.39620 3.42442 4.23911 4.30933 4.42195 4.50478 4.55894 4.62100 5.01714 5.03248 5.15998 5.24712 5.31805 5.34076 5.38726 5.39463 5.42577 5.58667 5.64391 5.69929 5.81705 5.84186 5.86907 6.02035 6.08736 6.26284 6.36015 6.74921 6.81945 7.16776 7.39018 7.64941 7.71481 7.86900 8.03750 8.47008 9.08174 9.64823 11.14606 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.073015 B = 0.002672 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 383.392523 B =10476.688238 C =10531.062022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.091 4.091 3 S -0.266 6.266 4 C -0.049 4.049 5 H 0.088 0.912 6 C -0.121 4.121 7 C -0.109 4.109 8 C 0.083 3.917 9 H 0.052 0.948 10 N -0.684 5.684 11 C 0.059 3.941 12 C -0.107 4.107 13 C 0.022 3.978 14 C -0.519 4.519 15 H 0.054 0.946 16 C 0.055 3.945 17 N -0.897 5.897 18 Si 0.893 3.107 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 C -0.105 4.105 23 H 0.064 0.936 24 H 0.063 0.937 25 H 0.069 0.931 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.338 0.662 33 H 0.024 0.976 34 H 0.067 0.933 35 H 0.055 0.945 36 H 0.044 0.956 37 H 0.013 0.987 38 H 0.016 0.984 39 H 0.260 0.740 40 H 0.085 0.915 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.495 -15.285 -9.146 25.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.239 4.239 3 S -0.039 6.039 4 C -0.178 4.178 5 H 0.106 0.894 6 C -0.161 4.161 7 C -0.148 4.148 8 C -0.028 4.028 9 H 0.070 0.930 10 N -0.315 5.315 11 C -0.069 4.069 12 C -0.145 4.145 13 C -0.016 4.016 14 C -0.557 4.557 15 H 0.073 0.927 16 C -0.146 4.146 17 N -0.536 5.536 18 Si 0.721 3.279 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.144 4.144 23 H 0.083 0.917 24 H 0.082 0.918 25 H 0.087 0.913 26 H 0.099 0.901 27 H 0.097 0.903 28 H 0.096 0.904 29 H 0.085 0.915 30 H 0.097 0.903 31 H 0.086 0.914 32 H 0.156 0.844 33 H 0.043 0.957 34 H 0.085 0.915 35 H 0.074 0.926 36 H 0.063 0.937 37 H 0.032 0.968 38 H 0.034 0.966 39 H 0.070 0.930 40 H 0.103 0.897 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -18.698 -14.833 -8.893 25.470 hybrid contribution 0.985 0.135 -0.110 1.001 sum -17.713 -14.698 -9.003 24.715 Atomic orbital electron populations 1.21514 0.92402 1.02403 1.03176 1.23278 1.00036 0.95796 1.04779 1.86988 1.06293 1.12670 1.97916 1.23720 0.91903 1.00909 1.01273 0.89368 1.22777 0.98352 0.99536 0.95396 1.22517 0.96273 0.94630 1.01387 1.22356 0.89458 0.95550 0.95419 0.92992 1.60678 1.26133 1.35616 1.09056 1.22172 0.96959 0.95842 0.91965 1.21622 0.94084 0.98343 1.00443 1.19060 0.95444 0.94883 0.92163 1.21224 1.06679 1.31284 0.96544 0.92732 1.25041 0.97901 0.96611 0.95032 1.69964 1.39263 1.41657 1.02743 0.86648 0.83840 0.79683 0.77765 1.20275 1.21329 1.20228 1.22167 0.98180 0.94578 0.99430 0.91689 0.91767 0.91262 0.90123 0.90343 0.90378 0.91477 0.90274 0.91374 0.84415 0.95741 0.91497 0.92592 0.93685 0.96838 0.96604 0.92998 0.89686 0.90938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.85 9.92 37.16 0.37 -0.48 16 2 C -0.09 -0.66 6.55 37.16 0.24 -0.42 16 3 S -0.27 -2.65 20.69 -107.50 -2.22 -4.88 16 4 C -0.05 -0.47 3.42 -25.62 -0.09 -0.55 16 5 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 6 C -0.12 -1.13 6.26 -25.07 -0.16 -1.29 16 7 C -0.11 -1.24 6.57 -24.74 -0.16 -1.40 16 8 C 0.08 1.03 3.19 -66.05 -0.21 0.82 16 9 H 0.05 0.70 7.83 -51.93 -0.41 0.29 16 10 N -0.68 -9.94 6.33 -104.97 -0.66 -10.60 16 11 C 0.06 1.04 5.55 -3.83 -0.02 1.02 16 12 C -0.11 -2.25 5.41 -26.73 -0.14 -2.39 16 13 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16 14 C -0.52 -15.00 9.11 -34.44 -0.31 -15.31 16 15 H 0.05 1.53 7.74 -52.48 -0.41 1.12 16 16 C 0.05 1.61 5.46 -17.81 -0.10 1.51 16 17 N -0.90 -27.38 13.29 55.43 0.74 -26.65 16 18 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 C -0.10 -1.11 5.95 -25.62 -0.15 -1.26 16 23 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.08 0.55 8.14 -51.92 -0.42 0.13 16 27 H 0.08 0.52 8.14 -51.92 -0.42 0.10 16 28 H 0.08 0.76 7.81 -51.92 -0.41 0.35 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.07 0.80 8.14 -51.92 -0.42 0.38 16 32 H 0.34 4.60 8.33 -39.30 -0.33 4.27 16 33 H 0.02 0.43 8.08 -51.93 -0.42 0.01 16 34 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 40 H 0.08 0.87 7.93 -51.93 -0.41 0.46 16 41 H 0.07 0.80 7.60 -51.93 -0.39 0.40 16 LS Contribution 341.14 15.07 5.14 5.14 Total: -1.00 -30.16 341.14 -10.73 -40.89 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -7.82 Total: -1.54 kcal Atomic # 6 Polarization: -18.45 SS G_CDS: -0.87 Total: -19.32 kcal Atomic # 7 Polarization: -37.32 SS G_CDS: 0.07 Total: -37.25 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Atomic # 16 Polarization: -2.65 SS G_CDS: -2.22 Total: -4.88 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.16 -10.73 -40.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300383102.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.128 kcal (2) G-P(sol) polarization free energy of solvation -30.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds