Wall clock time and date at job start Mon Mar 30 2020 06:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 S 1.81404 * 109.46946 * 2 1 4 4 C 1.81397 * 103.00143 * 180.02562 * 3 2 1 5 5 H 1.09006 * 110.01748 * 53.60019 * 4 3 2 6 6 C 1.54265 * 110.03192 * 292.16960 * 4 3 2 7 7 C 1.54888 * 104.19711 * 217.10414 * 6 4 3 8 8 C 1.54896 * 102.74858 * 37.93903 * 7 6 4 9 9 H 1.08997 * 110.48570 * 80.73199 * 8 7 6 10 10 N 1.46901 * 110.48667 * 203.38236 * 8 7 6 11 11 C 1.46902 * 110.99622 * 269.77140 * 10 8 7 12 12 C 1.52996 * 109.46936 * 180.02562 * 11 10 8 13 13 C 1.53000 * 109.47579 * 180.02562 * 12 11 10 14 14 C 1.50691 * 109.47443 * 180.02562 * 13 12 11 15 15 H 1.08003 * 120.00144 * 359.97438 * 14 13 12 16 16 C 1.37881 * 120.00215 * 180.02562 * 14 13 12 17 17 N 1.31522 * 119.99485 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00422 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47066 * 59.99511 * 18 16 14 20 20 H 1.48496 * 109.47397 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47037 * 299.99723 * 18 16 14 22 22 C 1.53869 * 110.03522 * 175.00172 * 4 3 2 23 23 H 1.09001 * 109.47194 * 299.99756 * 1 2 3 24 24 H 1.08992 * 109.47399 * 59.99928 * 1 2 3 25 25 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47398 * 120.00064 * 2 1 3 27 27 H 1.09001 * 109.47194 * 240.00244 * 2 1 3 28 28 H 1.09009 * 110.48509 * 335.77863 * 6 4 3 29 29 H 1.08995 * 110.49373 * 98.42221 * 6 4 3 30 30 H 1.09000 * 110.75521 * 279.62577 * 7 6 4 31 31 H 1.09008 * 110.76109 * 156.24904 * 7 6 4 32 32 H 1.00893 * 110.99701 * 145.82032 * 10 8 7 33 33 H 1.09001 * 109.47386 * 299.99869 * 11 10 8 34 34 H 1.09002 * 109.46847 * 60.00452 * 11 10 8 35 35 H 1.09000 * 109.47507 * 300.00467 * 12 11 10 36 36 H 1.09001 * 109.47245 * 59.99947 * 12 11 10 37 37 H 1.09003 * 109.46554 * 300.00255 * 13 12 11 38 38 H 1.09001 * 109.47040 * 59.99620 * 13 12 11 39 39 H 0.97001 * 119.99236 * 180.02562 * 17 16 14 40 40 H 1.09004 * 110.02860 * 238.56806 * 22 4 3 41 41 H 1.09000 * 110.03315 * 359.97438 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 6 3.9371 1.5060 -0.0008 5 1 4.2390 0.8601 -0.8254 6 6 4.4011 0.9028 1.3411 7 6 5.7452 1.6149 1.6331 8 6 5.4800 3.0601 1.1428 9 1 4.9299 3.6236 1.8964 10 7 6.7446 3.7328 0.8172 11 6 7.2856 4.4329 1.9900 12 6 8.5993 5.1202 1.6125 13 6 9.1632 5.8488 2.8340 14 6 10.4568 6.5262 2.4620 15 1 10.8390 6.4449 1.4551 16 6 11.1533 7.2491 3.4073 17 7 10.6881 7.3477 4.6336 18 14 12.7572 8.0882 2.9464 19 1 12.5087 9.0671 1.8577 20 1 13.3044 8.7955 4.1320 21 1 13.7334 7.0696 2.4830 22 6 4.6230 2.8775 -0.1268 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 3.6768 1.1181 2.1269 29 1 4.5521 -0.1723 1.2443 30 1 6.5559 1.1574 1.0660 31 1 5.9646 1.6034 2.7008 32 1 6.6278 4.3658 0.0403 33 1 6.5690 5.1810 2.3291 34 1 7.4674 3.7149 2.7897 35 1 9.3161 4.3725 1.2730 36 1 8.4171 5.8381 0.8128 37 1 8.4465 6.5965 3.1738 38 1 9.3455 5.1305 3.6334 39 1 11.1779 7.8565 5.2985 40 1 5.2585 2.8971 -1.0122 41 1 3.8729 3.6660 -0.1880 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300383102.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:57 Heat of formation + Delta-G solvation = -54.377805 kcal Electronic energy + Delta-G solvation = -16550.587164 eV Core-core repulsion = 13975.193019 eV Total energy + Delta-G solvation = -2575.394145 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.60256 -36.82019 -35.04926 -33.66397 -32.76140 -29.83327 -29.08766 -26.98423 -24.46144 -24.02642 -22.14071 -21.52955 -20.96429 -18.48750 -17.61670 -16.90929 -16.61461 -16.50210 -16.25013 -15.68280 -15.37438 -15.05518 -14.54218 -14.27037 -14.12625 -13.59388 -13.40754 -13.31897 -12.90812 -12.77073 -12.56942 -12.49579 -12.37601 -12.16219 -12.04712 -11.94130 -11.83597 -11.56735 -11.47760 -11.35985 -11.06297 -10.73176 -10.55056 -9.39844 -8.66250 -8.20119 -6.31402 0.73603 1.39987 1.43511 1.51442 1.64051 2.41117 3.12695 3.16376 3.44475 3.55635 4.04757 4.08782 4.19096 4.19894 4.28211 4.34093 4.43735 4.45470 4.53191 4.56546 4.68316 4.72175 4.83921 4.87768 4.91852 4.93361 5.00180 5.06954 5.14278 5.18589 5.22843 5.25723 5.35281 5.52212 5.74614 5.85559 6.09285 6.27080 6.48566 6.85429 7.37727 8.91665 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.073015 B = 0.002672 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 383.392523 B =10476.688238 C =10531.062022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.081 4.081 3 S -0.310 6.310 4 C -0.040 4.040 5 H 0.100 0.900 6 C -0.111 4.111 7 C -0.108 4.108 8 C 0.080 3.920 9 H 0.040 0.960 10 N -0.681 5.681 11 C 0.073 3.927 12 C -0.092 4.092 13 C 0.025 3.975 14 C -0.544 4.544 15 H 0.060 0.940 16 C -0.003 4.003 17 N -0.934 5.934 18 Si 0.967 3.033 19 H -0.266 1.266 20 H -0.283 1.283 21 H -0.266 1.266 22 C -0.098 4.098 23 H 0.057 0.943 24 H 0.059 0.941 25 H 0.089 0.911 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.060 0.940 32 H 0.345 0.655 33 H 0.019 0.981 34 H 0.060 0.940 35 H 0.054 0.946 36 H 0.051 0.949 37 H -0.011 1.011 38 H -0.009 1.009 39 H 0.264 0.736 40 H 0.091 0.909 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.514 -16.333 -10.556 26.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.229 4.229 3 S -0.082 6.082 4 C -0.169 4.169 5 H 0.118 0.882 6 C -0.151 4.151 7 C -0.147 4.147 8 C -0.030 4.030 9 H 0.058 0.942 10 N -0.312 5.312 11 C -0.056 4.056 12 C -0.130 4.130 13 C -0.013 4.013 14 C -0.582 4.582 15 H 0.079 0.921 16 C -0.201 4.201 17 N -0.575 5.575 18 Si 0.791 3.209 19 H -0.191 1.191 20 H -0.208 1.208 21 H -0.191 1.191 22 C -0.137 4.137 23 H 0.076 0.924 24 H 0.078 0.922 25 H 0.107 0.893 26 H 0.106 0.894 27 H 0.107 0.893 28 H 0.092 0.908 29 H 0.104 0.896 30 H 0.095 0.905 31 H 0.079 0.921 32 H 0.163 0.837 33 H 0.038 0.962 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.007 0.993 38 H 0.009 0.991 39 H 0.072 0.928 40 H 0.110 0.890 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -18.730 -15.891 -10.321 26.644 hybrid contribution 0.929 0.431 0.349 1.082 sum -17.801 -15.461 -9.973 25.600 Atomic orbital electron populations 1.21529 0.91684 1.03497 1.02653 1.23350 1.00519 0.93389 1.05623 1.87172 1.07117 1.15933 1.98010 1.23647 0.91318 1.00235 1.01687 0.88179 1.22709 0.96832 1.00381 0.95165 1.22489 0.97393 0.94040 1.00811 1.22413 0.88570 0.95728 0.96296 0.94156 1.60622 1.27531 1.35138 1.07895 1.21857 0.95303 0.95492 0.92953 1.21370 0.95516 0.98055 0.98021 1.18970 0.94656 0.94016 0.93643 1.21676 1.07752 1.31764 0.96986 0.92150 1.26032 1.01938 0.97270 0.94855 1.70103 1.40994 1.42439 1.03922 0.85469 0.78917 0.78711 0.77763 1.19113 1.20802 1.19105 1.22088 0.97848 0.95292 0.98479 0.92355 0.92174 0.89256 0.89389 0.89298 0.90757 0.89629 0.90538 0.92144 0.83671 0.96238 0.92129 0.92747 0.93063 0.99254 0.99092 0.92764 0.89034 0.91437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.92 71.98 0.71 -0.72 16 2 C -0.08 -1.01 6.55 71.98 0.47 -0.54 16 3 S -0.31 -5.78 20.69 -56.49 -1.17 -6.95 16 4 C -0.04 -0.69 3.42 31.32 0.11 -0.58 16 5 H 0.10 1.53 8.14 -2.38 -0.02 1.51 16 6 C -0.11 -1.89 6.26 31.67 0.20 -1.69 16 7 C -0.11 -2.34 6.57 31.89 0.21 -2.13 16 8 C 0.08 1.93 3.19 45.99 0.15 2.08 16 9 H 0.04 1.08 7.83 -2.39 -0.02 1.06 16 10 N -0.68 -19.27 6.33 -486.03 -3.08 -22.35 16 11 C 0.07 2.58 5.55 86.30 0.48 3.06 16 12 C -0.09 -3.87 5.41 30.59 0.17 -3.71 16 13 C 0.02 1.35 4.97 29.85 0.15 1.49 16 14 C -0.54 -31.72 9.11 25.60 0.23 -31.48 16 15 H 0.06 3.37 7.74 -2.91 -0.02 3.34 16 16 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 17 N -0.93 -57.96 13.29 21.45 0.28 -57.67 16 18 Si 0.97 44.93 29.54 68.60 2.03 46.95 16 19 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 20 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 21 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 22 C -0.10 -1.95 5.95 31.32 0.19 -1.77 16 23 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 24 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.09 0.98 8.14 -2.39 -0.02 0.97 16 27 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.07 1.34 7.81 -2.38 -0.02 1.32 16 29 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 32 H 0.34 9.00 8.33 -89.70 -0.75 8.25 16 33 H 0.02 0.70 8.08 -2.39 -0.02 0.68 16 34 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 36 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 37 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 38 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 39 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 40 H 0.09 1.71 7.93 -2.39 -0.02 1.69 16 41 H 0.07 1.43 7.60 -2.39 -0.02 1.41 16 Total: -1.00 -64.70 341.14 1.80 -62.90 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: 0.22 Total: 12.85 kcal Atomic # 6 Polarization: -39.24 SS G_CDS: 3.52 Total: -35.72 kcal Atomic # 7 Polarization: -77.23 SS G_CDS: -2.79 Total: -80.02 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.95 kcal Atomic # 16 Polarization: -5.78 SS G_CDS: -1.17 Total: -6.95 kcal Total: -64.70 1.80 -62.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300383102.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.519 kcal (2) G-P(sol) polarization free energy of solvation -64.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds