Wall clock time and date at job start Mon Mar 30 2020 06:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86807 * 119.99615 * 2 1 4 4 H 1.48506 * 109.46730 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47105 * 300.00059 * 3 2 1 6 6 H 1.48489 * 109.47216 * 60.00272 * 3 2 1 7 7 C 1.37873 * 120.00393 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00579 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99675 * 359.97438 * 7 2 1 10 10 H 1.09003 * 110.41793 * 57.69580 * 9 7 2 11 11 C 1.54478 * 110.37139 * 180.02562 * 9 7 2 12 12 C 1.54510 * 104.06500 * 142.81210 * 11 9 7 13 13 C 1.54477 * 104.18108 * 359.93120 * 12 11 9 14 14 H 1.09006 * 110.37498 * 94.92285 * 13 12 11 15 15 C 1.50701 * 110.37389 * 217.25757 * 13 12 11 16 16 C 1.38471 * 122.55900 * 95.00248 * 15 13 12 17 17 C 1.33345 * 114.93397 * 180.02562 * 16 15 13 18 18 S 1.75882 * 109.62028 * 0.02562 * 17 16 15 19 19 C 1.33502 * 122.55714 * 274.71667 * 15 13 12 20 20 Cl 1.73597 * 125.20917 * 359.97438 * 19 15 13 21 21 O 1.44415 * 110.37723 * 295.38233 * 9 7 2 22 22 H 0.96997 * 119.99940 * 359.97438 * 1 2 3 23 23 H 1.09000 * 110.51268 * 24.16636 * 11 9 7 24 24 H 1.09007 * 110.63128 * 261.51455 * 11 9 7 25 25 H 1.09002 * 110.51305 * 118.64650 * 12 11 9 26 26 H 1.08994 * 110.51141 * 241.21979 * 12 11 9 27 27 H 1.08005 * 122.53180 * 0.02569 * 16 15 13 28 28 H 1.08000 * 125.19077 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 1 0.5879 -2.5553 -0.8637 11 6 2.2364 -3.6888 -0.0005 12 6 1.5563 -4.7396 0.9054 13 6 0.2406 -4.0623 1.3487 14 1 -0.5784 -4.3589 0.6934 15 6 -0.0758 -4.4165 2.7789 16 6 0.2829 -3.6074 3.8439 17 6 -0.0722 -4.0675 5.0440 18 16 -0.9073 -5.6049 4.8637 19 6 -0.7282 -5.5315 3.1154 20 17 -1.3072 -6.7281 1.9989 21 8 0.4976 -2.6447 1.2228 22 1 -0.4850 0.8400 0.0004 23 1 3.1974 -3.3889 0.4174 24 1 2.3655 -4.0807 -1.0095 25 1 1.3469 -5.6500 0.3437 26 1 2.1821 -4.9609 1.7699 27 1 0.8105 -2.6742 3.7124 28 1 0.1238 -3.5721 5.9834 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306378197.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:03 Heat of formation + Delta-G solvation = -38.713100 kcal Electronic energy + Delta-G solvation = -14966.778270 eV Core-core repulsion = 12327.554617 eV Total energy + Delta-G solvation = -2639.223654 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 258.022 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.50289 -38.45056 -37.49314 -34.69832 -32.66234 -31.47842 -29.42327 -26.72144 -24.51470 -23.07571 -21.65003 -19.93972 -18.97486 -18.70663 -17.04431 -16.84040 -16.16282 -15.69009 -14.99364 -14.85233 -14.72593 -14.25848 -13.95830 -13.88141 -13.45015 -12.85507 -12.66500 -12.43798 -12.33129 -12.21363 -12.06611 -11.95720 -11.67859 -11.36017 -11.05929 -10.74382 -10.13393 -9.59505 -9.32933 -8.16939 -6.37509 -0.19695 0.13358 0.79603 1.27504 1.41151 1.42143 1.54949 1.59808 2.40597 3.04536 3.64537 3.80575 4.01741 4.13130 4.26144 4.37489 4.54170 4.62340 4.79308 4.96994 5.00042 5.10891 5.19074 5.24866 5.41856 5.52254 5.73165 6.14362 6.52464 6.88544 7.38287 8.91990 Molecular weight = 258.02amu Principal moments of inertia in cm(-1) A = 0.030402 B = 0.006182 C = 0.005596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.778811 B = 4528.332323 C = 5002.512061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.023 3.977 3 Si 0.964 3.036 4 H -0.261 1.261 5 H -0.276 1.276 6 H -0.280 1.280 7 C -0.548 4.548 8 H 0.068 0.932 9 C 0.197 3.803 10 H -0.006 1.006 11 C -0.138 4.138 12 C -0.127 4.127 13 C 0.113 3.887 14 H 0.054 0.946 15 C -0.081 4.081 16 C -0.129 4.129 17 C -0.194 4.194 18 S 0.184 5.816 19 C -0.166 4.166 20 Cl -0.012 7.012 21 O -0.375 6.375 22 H 0.262 0.738 23 H 0.065 0.935 24 H 0.074 0.926 25 H 0.086 0.914 26 H 0.073 0.927 27 H 0.133 0.867 28 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.536 -12.182 8.985 15.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.179 4.179 3 Si 0.788 3.212 4 H -0.184 1.184 5 H -0.202 1.202 6 H -0.206 1.206 7 C -0.585 4.585 8 H 0.086 0.914 9 C 0.141 3.859 10 H 0.011 0.989 11 C -0.175 4.175 12 C -0.165 4.165 13 C 0.053 3.947 14 H 0.072 0.928 15 C -0.096 4.096 16 C -0.159 4.159 17 C -0.330 4.330 18 S 0.446 5.554 19 C -0.310 4.310 20 Cl 0.016 6.984 21 O -0.295 6.295 22 H 0.071 0.929 23 H 0.083 0.917 24 H 0.092 0.908 25 H 0.105 0.895 26 H 0.092 0.908 27 H 0.151 0.849 28 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -1.462 -13.068 10.050 16.550 hybrid contribution 0.718 1.824 -1.553 2.500 sum -0.744 -11.244 8.498 14.114 Atomic orbital electron populations 1.70184 1.07803 1.27511 1.48732 1.25977 0.95587 1.03189 0.93162 0.85441 0.79235 0.78814 0.77729 1.18439 1.20176 1.20600 1.21477 0.93113 0.91047 1.52863 0.91424 1.20445 0.88091 0.93994 0.83372 0.98858 1.22926 0.99610 0.95364 0.99637 1.22798 0.95450 0.98448 0.99758 1.21482 0.97016 0.85270 0.90966 0.92804 1.18853 0.99740 0.94046 0.96919 1.19893 1.03378 1.01445 0.91178 1.26030 1.04930 0.99580 1.02432 1.83805 1.57111 1.19662 0.94792 1.25051 1.10883 0.97904 0.97116 1.98331 1.87030 1.53164 1.59845 1.89438 1.75589 1.19915 1.44511 0.92877 0.91667 0.90771 0.89499 0.90830 0.84895 0.78096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -55.16 13.07 21.45 0.28 -54.88 15 2 C 0.02 1.30 5.43 84.65 0.46 1.76 15 3 Si 0.96 44.01 29.54 68.60 2.03 46.04 15 4 H -0.26 -11.31 7.11 99.48 0.71 -10.61 15 5 H -0.28 -12.22 7.11 99.48 0.71 -11.52 15 6 H -0.28 -12.61 7.11 99.48 0.71 -11.90 15 7 C -0.55 -31.14 8.77 25.60 0.22 -30.92 15 8 H 0.07 3.69 7.57 -2.91 -0.02 3.66 15 9 C 0.20 10.45 3.06 30.35 0.09 10.54 15 10 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 15 11 C -0.14 -5.72 6.62 31.61 0.21 -5.51 15 12 C -0.13 -4.59 6.61 31.61 0.21 -4.38 15 13 C 0.11 4.73 3.26 30.35 0.10 4.83 15 14 H 0.05 2.31 7.76 -2.38 -0.02 2.29 15 15 C -0.08 -2.93 4.91 -20.88 -0.10 -3.03 15 16 C -0.13 -4.44 9.53 21.22 0.20 -4.23 15 17 C -0.19 -4.92 11.22 66.71 0.75 -4.17 15 18 S 0.18 4.28 23.34 -56.49 -1.32 2.97 15 19 C -0.17 -5.04 7.07 66.75 0.47 -4.57 15 20 Cl -0.01 -0.34 28.48 -2.72 -0.08 -0.41 15 21 O -0.37 -19.92 9.89 -148.98 -1.47 -21.39 15 22 H 0.26 15.02 8.31 -92.71 -0.77 14.25 15 23 H 0.06 2.68 7.71 -2.39 -0.02 2.67 15 24 H 0.07 2.76 8.14 -2.38 -0.02 2.74 15 25 H 0.09 2.69 8.14 -2.39 -0.02 2.67 15 26 H 0.07 2.51 7.86 -2.39 -0.02 2.49 15 27 H 0.13 5.21 7.66 -2.91 -0.02 5.19 15 28 H 0.20 3.63 8.06 -2.91 -0.02 3.61 15 Total: -1.00 -65.42 271.48 3.22 -62.20 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: 1.17 Total: 5.16 kcal Atomic # 6 Polarization: -42.29 SS G_CDS: 2.62 Total: -39.67 kcal Atomic # 7 Polarization: -55.16 SS G_CDS: 0.28 Total: -54.88 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: -1.47 Total: -21.39 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Atomic # 16 Polarization: 4.28 SS G_CDS: -1.32 Total: 2.97 kcal Atomic # 17 Polarization: -0.34 SS G_CDS: -0.08 Total: -0.41 kcal Total: -65.42 3.22 -62.20 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306378197.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.486 kcal (2) G-P(sol) polarization free energy of solvation -65.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds