Wall clock time and date at job start Mon Mar 30 2020 06:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86807 * 119.99708 * 2 1 4 4 H 1.48494 * 109.47352 * 269.99887 * 3 2 1 5 5 H 1.48497 * 109.46981 * 30.00189 * 3 2 1 6 6 H 1.48504 * 109.46760 * 149.99968 * 3 2 1 7 7 C 1.37880 * 120.00281 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99893 * 180.02562 * 7 2 1 9 9 C 1.50691 * 119.99819 * 0.02562 * 7 2 1 10 10 H 1.09003 * 109.82105 * 300.88509 * 9 7 2 11 11 C 1.54380 * 109.82824 * 180.02562 * 9 7 2 12 12 C 1.55308 * 102.25171 * 219.03483 * 11 9 7 13 13 C 1.54947 * 100.93910 * 34.13354 * 12 11 9 14 14 H 1.09000 * 110.30934 * 82.56997 * 13 12 11 15 15 C 1.50703 * 110.30881 * 204.63877 * 13 12 11 16 16 C 1.38468 * 122.55978 * 95.00273 * 15 13 12 17 17 C 1.33351 * 114.93449 * 180.02562 * 16 15 13 18 18 S 1.75879 * 109.61833 * 0.02562 * 17 16 15 19 19 C 1.33505 * 122.55591 * 275.02217 * 15 13 12 20 20 Cl 1.73596 * 125.20969 * 0.24558 * 19 15 13 21 21 O 1.43231 * 109.90968 * 61.82006 * 9 7 2 22 22 H 0.96996 * 119.99982 * 359.97438 * 1 2 3 23 23 H 1.09003 * 110.85136 * 100.85103 * 11 9 7 24 24 H 1.08995 * 110.85113 * 337.22376 * 11 9 7 25 25 H 1.08995 * 111.13096 * 276.21670 * 12 11 9 26 26 H 1.08998 * 111.12774 * 152.04998 * 12 11 9 27 27 H 1.07999 * 122.53580 * 0.04409 * 16 15 13 28 28 H 1.08000 * 125.19168 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0847 -1.1940 -0.0001 9 6 1.2512 -2.4991 -0.0017 10 1 0.6102 -2.5566 0.8781 11 6 2.2471 -3.6787 -0.0015 12 6 1.5596 -4.6906 -0.9583 13 6 0.8885 -3.7286 -1.9707 14 1 1.6076 -3.4132 -2.7267 15 6 -0.2947 -4.3971 -2.6221 16 6 -1.5892 -4.2397 -2.1563 17 6 -2.5193 -4.9004 -2.8467 18 16 -1.7603 -5.7829 -4.1653 19 6 -0.1747 -5.1866 -3.6920 20 17 1.3185 -5.5723 -4.4888 21 8 0.4570 -2.6027 -1.1892 22 1 -0.4850 0.8400 0.0004 23 1 2.3501 -4.0993 0.9989 24 1 3.2153 -3.3691 -0.3949 25 1 0.8155 -5.2871 -0.4306 26 1 2.2945 -5.3280 -1.4499 27 1 -1.8276 -3.6279 -1.2989 28 1 -3.5771 -4.8952 -2.6289 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306378198.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:05 Heat of formation + Delta-G solvation = -20.853705 kcal Electronic energy + Delta-G solvation = -14993.485581 eV Core-core repulsion = 12355.036368 eV Total energy + Delta-G solvation = -2638.449212 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 258.022 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.97587 -36.98964 -36.24818 -32.55944 -30.98388 -29.94873 -27.77433 -24.89633 -23.09449 -21.15613 -20.24508 -18.57126 -17.60763 -16.54043 -15.99498 -14.87519 -14.36522 -14.03972 -13.57734 -13.53982 -13.03216 -12.68509 -12.27086 -12.19534 -11.73443 -11.41846 -11.00411 -10.90362 -10.87454 -10.57800 -10.44724 -10.38004 -10.17115 -9.83564 -9.22000 -8.53418 -8.40054 -8.23900 -7.83313 -5.98619 -4.12077 1.03766 1.31332 1.99703 2.48770 2.91937 3.31810 3.38402 3.40666 4.43709 4.97162 5.14716 5.43266 5.45320 5.52349 5.68177 5.80701 6.09018 6.17975 6.31011 6.46028 6.50910 6.63948 6.65841 6.78334 6.85833 7.63113 7.89025 8.28218 8.56494 9.02898 9.59662 11.08104 Molecular weight = 258.02amu Principal moments of inertia in cm(-1) A = 0.029024 B = 0.006233 C = 0.005807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.482953 B = 4490.954747 C = 4820.508713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.080 3.920 3 Si 0.888 3.112 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.545 4.545 8 H 0.059 0.941 9 C 0.206 3.794 10 H 0.040 0.960 11 C -0.144 4.144 12 C -0.144 4.144 13 C 0.130 3.870 14 H 0.069 0.931 15 C -0.062 4.062 16 C -0.093 4.093 17 C -0.213 4.213 18 S 0.104 5.896 19 C -0.154 4.154 20 Cl -0.021 7.021 21 O -0.349 6.349 22 H 0.260 0.740 23 H 0.061 0.939 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.160 0.840 28 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.459 -11.734 -6.184 13.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.126 4.126 3 Si 0.716 3.284 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.582 4.582 8 H 0.078 0.922 9 C 0.151 3.849 10 H 0.058 0.942 11 C -0.182 4.182 12 C -0.182 4.182 13 C 0.069 3.931 14 H 0.086 0.914 15 C -0.077 4.077 16 C -0.123 4.123 17 C -0.348 4.348 18 S 0.366 5.634 19 C -0.296 4.296 20 Cl 0.007 6.993 21 O -0.269 6.269 22 H 0.070 0.930 23 H 0.080 0.920 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.085 0.915 27 H 0.177 0.823 28 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -3.207 -12.474 -7.453 14.881 hybrid contribution 1.227 1.706 0.962 2.311 sum -1.980 -10.768 -6.491 12.728 Atomic orbital electron populations 1.70021 1.05984 1.26478 1.47472 1.25042 0.94726 0.99137 0.93673 0.86679 0.79977 0.83560 0.78226 1.20522 1.21146 1.19823 1.21393 0.92731 0.90750 1.53344 0.92247 1.20317 0.87903 0.91970 0.84739 0.94212 1.23217 1.00505 0.96313 0.98145 1.23189 0.99489 0.97950 0.97535 1.21322 0.90022 0.87739 0.94036 0.91369 1.19272 0.97394 0.96704 0.94300 1.20089 0.90490 0.99770 1.01949 1.25618 1.03558 1.05211 1.00429 1.84023 0.96092 1.50679 1.32646 1.24812 0.92058 1.10281 1.02484 1.98330 1.29447 1.92927 1.78580 1.88796 1.58754 1.43816 1.35487 0.93003 0.92041 0.91444 0.91449 0.91487 0.82293 0.81386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.42 12.93 55.43 0.72 -24.70 15 2 C 0.08 2.26 5.41 -17.82 -0.10 2.16 15 3 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 15 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 15 6 H -0.27 -6.43 7.11 56.52 0.40 -6.02 15 7 C -0.54 -15.15 8.75 -34.44 -0.30 -15.45 15 8 H 0.06 1.61 7.52 -52.48 -0.39 1.22 15 9 C 0.21 5.21 3.35 -27.16 -0.09 5.12 15 10 H 0.04 1.08 8.14 -51.93 -0.42 0.66 15 11 C -0.14 -2.93 6.53 -24.78 -0.16 -3.09 15 12 C -0.14 -2.60 6.56 -24.48 -0.16 -2.76 15 13 C 0.13 2.66 3.40 -26.85 -0.09 2.57 15 14 H 0.07 1.45 7.76 -51.93 -0.40 1.04 15 15 C -0.06 -1.13 5.01 -106.19 -0.53 -1.66 15 16 C -0.09 -1.59 9.52 -41.20 -0.39 -1.99 15 17 C -0.21 -2.95 11.22 29.03 0.33 -2.63 15 18 S 0.10 1.39 23.34 -107.50 -2.51 -1.12 15 19 C -0.15 -2.46 7.07 29.08 0.21 -2.25 15 20 Cl -0.02 -0.31 28.48 -51.86 -1.48 -1.79 15 21 O -0.35 -8.85 9.36 -35.23 -0.33 -9.18 15 22 H 0.26 7.26 8.31 -40.82 -0.34 6.92 15 23 H 0.06 1.13 8.14 -51.93 -0.42 0.71 15 24 H 0.07 1.37 7.66 -51.93 -0.40 0.97 15 25 H 0.07 1.17 8.05 -51.93 -0.42 0.75 15 26 H 0.07 1.08 8.14 -51.93 -0.42 0.65 15 27 H 0.16 2.94 7.66 -52.49 -0.40 2.54 15 28 H 0.17 1.82 8.06 -52.49 -0.42 1.40 15 LS Contribution 271.24 15.07 4.09 4.09 Total: -1.00 -29.52 271.24 -8.67 -38.19 By element: Atomic # 1 Polarization: 0.97 SS G_CDS: -2.84 Total: -1.88 kcal Atomic # 6 Polarization: -18.68 SS G_CDS: -1.30 Total: -19.98 kcal Atomic # 7 Polarization: -25.42 SS G_CDS: 0.72 Total: -24.70 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: -0.33 Total: -9.18 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: 1.39 SS G_CDS: -2.51 Total: -1.12 kcal Atomic # 17 Polarization: -0.31 SS G_CDS: -1.48 Total: -1.79 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -29.52 -8.67 -38.19 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306378198.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.337 kcal (2) G-P(sol) polarization free energy of solvation -29.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds