Wall clock time and date at job start Mon Mar 30 2020 06:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86807 * 119.99708 * 2 1 4 4 H 1.48494 * 109.47352 * 269.99887 * 3 2 1 5 5 H 1.48497 * 109.46981 * 30.00189 * 3 2 1 6 6 H 1.48504 * 109.46760 * 149.99968 * 3 2 1 7 7 C 1.37880 * 120.00281 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99893 * 180.02562 * 7 2 1 9 9 C 1.50691 * 119.99819 * 0.02562 * 7 2 1 10 10 H 1.09003 * 109.82105 * 300.88509 * 9 7 2 11 11 C 1.54380 * 109.82824 * 180.02562 * 9 7 2 12 12 C 1.55308 * 102.25171 * 219.03483 * 11 9 7 13 13 C 1.54947 * 100.93910 * 34.13354 * 12 11 9 14 14 H 1.09000 * 110.30934 * 82.56997 * 13 12 11 15 15 C 1.50703 * 110.30881 * 204.63877 * 13 12 11 16 16 C 1.38468 * 122.55978 * 95.00273 * 15 13 12 17 17 C 1.33351 * 114.93449 * 180.02562 * 16 15 13 18 18 S 1.75879 * 109.61833 * 0.02562 * 17 16 15 19 19 C 1.33505 * 122.55591 * 275.02217 * 15 13 12 20 20 Cl 1.73596 * 125.20969 * 0.24558 * 19 15 13 21 21 O 1.43231 * 109.90968 * 61.82006 * 9 7 2 22 22 H 0.96996 * 119.99982 * 359.97438 * 1 2 3 23 23 H 1.09003 * 110.85136 * 100.85103 * 11 9 7 24 24 H 1.08995 * 110.85113 * 337.22376 * 11 9 7 25 25 H 1.08995 * 111.13096 * 276.21670 * 12 11 9 26 26 H 1.08998 * 111.12774 * 152.04998 * 12 11 9 27 27 H 1.07999 * 122.53580 * 0.04409 * 16 15 13 28 28 H 1.08000 * 125.19168 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0847 -1.1940 -0.0001 9 6 1.2512 -2.4991 -0.0017 10 1 0.6102 -2.5566 0.8781 11 6 2.2471 -3.6787 -0.0015 12 6 1.5596 -4.6906 -0.9583 13 6 0.8885 -3.7286 -1.9707 14 1 1.6076 -3.4132 -2.7267 15 6 -0.2947 -4.3971 -2.6221 16 6 -1.5892 -4.2397 -2.1563 17 6 -2.5193 -4.9004 -2.8467 18 16 -1.7603 -5.7829 -4.1653 19 6 -0.1747 -5.1866 -3.6920 20 17 1.3185 -5.5723 -4.4888 21 8 0.4570 -2.6027 -1.1892 22 1 -0.4850 0.8400 0.0004 23 1 2.3501 -4.0993 0.9989 24 1 3.2153 -3.3691 -0.3949 25 1 0.8155 -5.2871 -0.4306 26 1 2.2945 -5.3280 -1.4499 27 1 -1.8276 -3.6279 -1.2989 28 1 -3.5771 -4.8952 -2.6289 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306378198.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:05 Heat of formation + Delta-G solvation = -37.786967 kcal Electronic energy + Delta-G solvation = -14994.219862 eV Core-core repulsion = 12355.036368 eV Total energy + Delta-G solvation = -2639.183494 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 258.022 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.52008 -38.44601 -37.47675 -34.64085 -32.69111 -31.47133 -29.39011 -26.70756 -24.52626 -22.72167 -22.02700 -19.89378 -18.86811 -18.56487 -17.54997 -16.73959 -16.04078 -15.65882 -14.88433 -14.83629 -14.70666 -14.02751 -13.89231 -13.78151 -13.63905 -12.82136 -12.62775 -12.42821 -12.33968 -12.30071 -12.12480 -11.93805 -11.70718 -11.49543 -11.09924 -10.66842 -9.92000 -9.57113 -9.29329 -8.11612 -6.32699 -0.18074 0.14952 0.81084 1.29280 1.40350 1.41578 1.51722 1.61407 2.41694 3.08101 3.58689 3.82407 3.92859 4.16513 4.29032 4.39157 4.61142 4.63681 4.75357 4.93429 5.04958 5.09140 5.19200 5.26696 5.43260 5.64308 5.77002 6.20458 6.60018 7.03219 7.43975 8.95223 Molecular weight = 258.02amu Principal moments of inertia in cm(-1) A = 0.029024 B = 0.006233 C = 0.005807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.482953 B = 4490.954747 C = 4820.508713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.026 3.974 3 Si 0.956 3.044 4 H -0.278 1.278 5 H -0.280 1.280 6 H -0.262 1.262 7 C -0.565 4.565 8 H 0.061 0.939 9 C 0.199 3.801 10 H 0.007 0.993 11 C -0.136 4.136 12 C -0.128 4.128 13 C 0.124 3.876 14 H 0.056 0.944 15 C -0.087 4.087 16 C -0.128 4.128 17 C -0.195 4.195 18 S 0.181 5.819 19 C -0.166 4.166 20 Cl -0.012 7.012 21 O -0.379 6.379 22 H 0.260 0.740 23 H 0.080 0.920 24 H 0.067 0.933 25 H 0.075 0.925 26 H 0.093 0.907 27 H 0.132 0.868 28 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.399 -13.030 -7.369 15.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.176 4.176 3 Si 0.780 3.220 4 H -0.204 1.204 5 H -0.206 1.206 6 H -0.186 1.186 7 C -0.602 4.602 8 H 0.079 0.921 9 C 0.143 3.857 10 H 0.025 0.975 11 C -0.174 4.174 12 C -0.166 4.166 13 C 0.064 3.936 14 H 0.073 0.927 15 C -0.101 4.101 16 C -0.158 4.158 17 C -0.330 4.330 18 S 0.443 5.557 19 C -0.309 4.309 20 Cl 0.016 6.984 21 O -0.299 6.299 22 H 0.069 0.931 23 H 0.098 0.902 24 H 0.086 0.914 25 H 0.094 0.906 26 H 0.112 0.888 27 H 0.150 0.850 28 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -3.132 -13.786 -8.640 16.569 hybrid contribution 1.144 2.013 1.245 2.628 sum -1.988 -11.774 -7.396 14.045 Atomic orbital electron populations 1.70163 1.07566 1.27252 1.48813 1.25893 0.95567 1.02819 0.93363 0.85617 0.79000 0.79124 0.78213 1.20370 1.20582 1.18629 1.21827 0.93086 0.92276 1.53023 0.92086 1.20203 0.88234 0.93290 0.83977 0.97488 1.23101 0.99214 0.95120 0.99968 1.23115 0.99789 0.97251 0.96426 1.21401 0.91330 0.87117 0.93800 0.92657 1.19069 0.96885 0.98382 0.95785 1.19887 0.91201 1.01924 1.02792 1.26022 1.04657 1.02942 0.99414 1.83802 0.92958 1.48438 1.30548 1.25037 0.94010 1.09915 1.01965 1.98331 1.29194 1.92724 1.78150 1.88709 1.59178 1.46299 1.35732 0.93064 0.90161 0.91421 0.90629 0.88848 0.84990 0.78189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.83 12.93 21.45 0.28 -54.56 15 2 C 0.03 1.48 5.41 84.65 0.46 1.93 15 3 Si 0.96 44.55 29.54 68.60 2.03 46.58 15 4 H -0.28 -12.80 7.11 99.48 0.71 -12.09 15 5 H -0.28 -12.71 7.11 99.48 0.71 -12.01 15 6 H -0.26 -11.62 7.11 99.48 0.71 -10.91 15 7 C -0.56 -32.18 8.75 25.60 0.22 -31.96 15 8 H 0.06 3.35 7.52 -2.91 -0.02 3.33 15 9 C 0.20 10.43 3.35 30.31 0.10 10.53 15 10 H 0.01 0.42 8.14 -2.39 -0.02 0.40 15 11 C -0.14 -5.55 6.53 31.86 0.21 -5.34 15 12 C -0.13 -4.55 6.56 32.05 0.21 -4.34 15 13 C 0.12 5.15 3.40 30.51 0.10 5.26 15 14 H 0.06 2.39 7.76 -2.39 -0.02 2.37 15 15 C -0.09 -3.12 5.01 -20.88 -0.10 -3.22 15 16 C -0.13 -4.40 9.52 21.22 0.20 -4.20 15 17 C -0.19 -4.97 11.22 66.71 0.75 -4.22 15 18 S 0.18 4.22 23.34 -56.49 -1.32 2.91 15 19 C -0.17 -5.03 7.07 66.75 0.47 -4.56 15 20 Cl -0.01 -0.34 28.48 -2.72 -0.08 -0.42 15 21 O -0.38 -20.03 9.36 -148.98 -1.39 -21.42 15 22 H 0.26 14.98 8.31 -92.71 -0.77 14.21 15 23 H 0.08 2.91 8.14 -2.39 -0.02 2.89 15 24 H 0.07 2.72 7.66 -2.39 -0.02 2.70 15 25 H 0.08 2.56 8.05 -2.39 -0.02 2.54 15 26 H 0.09 2.81 8.14 -2.39 -0.02 2.79 15 27 H 0.13 5.19 7.66 -2.91 -0.02 5.17 15 28 H 0.20 3.67 8.06 -2.91 -0.02 3.64 15 Total: -1.00 -65.31 271.24 3.31 -62.01 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: 1.17 Total: 5.03 kcal Atomic # 6 Polarization: -42.74 SS G_CDS: 2.62 Total: -40.12 kcal Atomic # 7 Polarization: -54.83 SS G_CDS: 0.28 Total: -54.56 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: -1.39 Total: -21.42 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Atomic # 16 Polarization: 4.22 SS G_CDS: -1.32 Total: 2.91 kcal Atomic # 17 Polarization: -0.34 SS G_CDS: -0.08 Total: -0.42 kcal Total: -65.31 3.31 -62.01 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306378198.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.219 kcal (2) G-P(sol) polarization free energy of solvation -65.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds