Wall clock time and date at job start Mon Mar 30 2020 06:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48500 * 109.46986 * 270.00107 * 3 2 1 5 5 H 1.48496 * 109.47029 * 30.00124 * 3 2 1 6 6 H 1.48499 * 109.47352 * 149.99954 * 3 2 1 7 7 C 1.37885 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99806 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99686 * 179.72339 * 7 2 1 10 10 H 1.08991 * 110.55696 * 298.57409 * 9 7 2 11 11 C 1.55005 * 110.61441 * 175.52270 * 9 7 2 12 12 C 1.54814 * 102.08835 * 204.47522 * 11 9 7 13 13 C 1.54091 * 104.19052 * 20.88471 * 12 11 9 14 14 H 1.09000 * 109.88025 * 242.60277 * 13 12 11 15 15 C 1.50698 * 109.87797 * 121.45155 * 13 12 11 16 16 C 1.38472 * 122.55715 * 265.44682 * 15 13 12 17 17 C 1.33354 * 114.93125 * 179.76119 * 16 15 13 18 18 S 1.75878 * 109.61832 * 0.48070 * 17 16 15 19 19 C 1.33507 * 122.56117 * 85.74003 * 15 13 12 20 20 Cl 1.73599 * 125.20280 * 359.97438 * 19 15 13 21 21 O 1.43749 * 107.29432 * 2.02647 * 13 12 11 22 22 H 0.97000 * 119.99706 * 359.97438 * 1 2 3 23 23 H 1.08995 * 110.90588 * 322.67560 * 11 9 7 24 24 H 1.09000 * 110.90378 * 86.28166 * 11 9 7 25 25 H 1.09000 * 110.48835 * 262.20186 * 12 11 9 26 26 H 1.09003 * 110.47882 * 139.56540 * 12 11 9 27 27 H 1.08000 * 122.53957 * 359.97438 * 16 15 13 28 28 H 1.07993 * 125.19150 * 180.23070 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 -0.0058 10 1 3.8905 -0.7085 -0.9050 11 6 4.0578 -2.6400 0.1093 12 6 5.4641 -2.4082 0.7139 13 6 5.3712 -1.0135 1.3624 14 1 6.0706 -0.3321 0.8779 15 6 5.6822 -1.1108 2.8337 16 6 4.6963 -1.2478 3.7963 17 6 5.1422 -1.3247 5.0507 18 16 6.8971 -1.2084 5.0618 19 6 6.9290 -1.0657 3.3091 20 17 8.3621 -0.8933 2.3446 21 8 4.0248 -0.5450 1.1773 22 1 -0.4850 0.8401 0.0004 23 1 3.4397 -3.2371 0.7798 24 1 4.1289 -3.1082 -0.8724 25 1 6.2220 -2.4151 -0.0695 26 1 5.6851 -3.1650 1.4665 27 1 3.6458 -1.2927 3.5496 28 1 4.5204 -1.4367 5.9265 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306378200.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:07 Heat of formation + Delta-G solvation = -33.452730 kcal Electronic energy + Delta-G solvation = -15114.668721 eV Core-core repulsion = 12475.673174 eV Total energy + Delta-G solvation = -2638.995547 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 258.022 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.70785 -38.50878 -37.49369 -34.74195 -32.84667 -31.72264 -29.66356 -26.70305 -24.53438 -22.82827 -21.79138 -19.95244 -19.08288 -18.90291 -17.37019 -16.98776 -16.12949 -15.77349 -14.87814 -14.76422 -14.71878 -14.50312 -14.33652 -13.89438 -13.47626 -12.88745 -12.69473 -12.63044 -12.31141 -12.09893 -12.09487 -11.82557 -11.66569 -11.38400 -11.31833 -10.75592 -10.19925 -9.60127 -9.34241 -8.34913 -6.47032 -0.19910 0.13481 0.79693 1.26663 1.36712 1.40056 1.59257 1.68796 2.42317 2.92508 3.51846 3.76752 3.94023 4.06754 4.22719 4.36462 4.46932 4.52144 4.72957 4.91028 4.97160 5.06533 5.16759 5.24680 5.38816 5.45682 5.53538 6.21616 6.38550 6.68683 7.29116 8.79168 Molecular weight = 258.02amu Principal moments of inertia in cm(-1) A = 0.027185 B = 0.007090 C = 0.006692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.735289 B = 3948.501102 C = 4183.003081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.031 3.969 3 Si 0.929 3.071 4 H -0.275 1.275 5 H -0.294 1.294 6 H -0.214 1.214 7 C -0.525 4.525 8 H 0.044 0.956 9 C 0.167 3.833 10 H 0.031 0.969 11 C -0.129 4.129 12 C -0.129 4.129 13 C 0.115 3.885 14 H 0.070 0.930 15 C -0.086 4.086 16 C -0.130 4.130 17 C -0.197 4.197 18 S 0.179 5.821 19 C -0.165 4.165 20 Cl -0.010 7.010 21 O -0.385 6.385 22 H 0.267 0.733 23 H 0.057 0.943 24 H 0.083 0.917 25 H 0.093 0.907 26 H 0.079 0.921 27 H 0.134 0.866 28 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.641 -2.688 8.900 19.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.169 4.169 3 Si 0.753 3.247 4 H -0.201 1.201 5 H -0.220 1.220 6 H -0.136 1.136 7 C -0.562 4.562 8 H 0.063 0.937 9 C 0.111 3.889 10 H 0.049 0.951 11 C -0.167 4.167 12 C -0.167 4.167 13 C 0.054 3.946 14 H 0.088 0.912 15 C -0.101 4.101 16 C -0.160 4.160 17 C -0.332 4.332 18 S 0.441 5.559 19 C -0.309 4.309 20 Cl 0.019 6.981 21 O -0.306 6.306 22 H 0.076 0.924 23 H 0.076 0.924 24 H 0.102 0.898 25 H 0.111 0.889 26 H 0.097 0.903 27 H 0.152 0.848 28 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 18.642 -2.455 10.108 21.347 hybrid contribution -1.374 0.666 -1.510 2.147 sum 17.268 -1.790 8.598 19.373 Atomic orbital electron populations 1.70044 1.08314 1.28359 1.51070 1.25860 0.95292 1.03282 0.92431 0.86079 0.81842 0.78078 0.78726 1.20087 1.22018 1.13603 1.21173 0.90091 0.93415 1.51563 0.93748 1.21005 0.92662 0.90227 0.84973 0.95107 1.22925 0.95114 0.97405 1.01228 1.22854 0.97704 0.95622 1.00494 1.21354 0.87054 0.95966 0.90183 0.91197 1.19013 0.91458 1.02211 0.97423 1.19936 1.00948 1.03204 0.91866 1.26022 0.97727 1.07979 1.01497 1.83891 1.03010 1.72136 0.96852 1.25041 0.91219 1.16890 0.97700 1.98336 1.34091 1.96202 1.69483 1.89228 1.25886 1.67182 1.48281 0.92371 0.92437 0.89849 0.88891 0.90270 0.84840 0.78478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.95 13.96 21.45 0.30 -58.65 15 2 C 0.03 1.84 5.47 84.66 0.46 2.30 15 3 Si 0.93 45.71 27.11 68.60 1.86 47.57 15 4 H -0.28 -13.00 7.11 99.48 0.71 -12.29 15 5 H -0.29 -14.43 7.11 99.48 0.71 -13.72 15 6 H -0.21 -10.14 5.36 99.48 0.53 -9.60 15 7 C -0.53 -30.21 9.41 25.60 0.24 -29.97 15 8 H 0.04 2.78 8.02 -2.92 -0.02 2.76 15 9 C 0.17 7.82 2.55 30.53 0.08 7.90 15 10 H 0.03 1.44 7.69 -2.39 -0.02 1.42 15 11 C -0.13 -4.91 6.55 31.90 0.21 -4.70 15 12 C -0.13 -4.05 6.63 31.58 0.21 -3.84 15 13 C 0.11 4.12 3.41 30.22 0.10 4.22 15 14 H 0.07 2.42 7.68 -2.39 -0.02 2.40 15 15 C -0.09 -2.79 4.76 -20.88 -0.10 -2.89 15 16 C -0.13 -4.14 9.52 21.22 0.20 -3.94 15 17 C -0.20 -4.71 11.22 66.71 0.75 -3.96 15 18 S 0.18 3.85 23.34 -56.49 -1.32 2.53 15 19 C -0.17 -4.49 7.07 66.75 0.47 -4.02 15 20 Cl -0.01 -0.23 28.42 -2.72 -0.08 -0.31 15 21 O -0.39 -17.56 7.05 -148.98 -1.05 -18.62 15 22 H 0.27 15.75 8.31 -92.71 -0.77 14.98 15 23 H 0.06 2.32 8.05 -2.39 -0.02 2.30 15 24 H 0.08 2.83 8.14 -2.39 -0.02 2.81 15 25 H 0.09 2.45 8.14 -2.39 -0.02 2.43 15 26 H 0.08 2.30 7.69 -2.39 -0.02 2.28 15 27 H 0.13 4.95 7.69 -2.91 -0.02 4.93 15 28 H 0.20 3.46 8.06 -2.91 -0.02 3.44 15 Total: -1.00 -65.55 265.53 3.33 -62.22 By element: Atomic # 1 Polarization: 3.15 SS G_CDS: 0.99 Total: 4.15 kcal Atomic # 6 Polarization: -41.51 SS G_CDS: 2.63 Total: -38.89 kcal Atomic # 7 Polarization: -58.95 SS G_CDS: 0.30 Total: -58.65 kcal Atomic # 8 Polarization: -17.56 SS G_CDS: -1.05 Total: -18.62 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 1.86 Total: 47.57 kcal Atomic # 16 Polarization: 3.85 SS G_CDS: -1.32 Total: 2.53 kcal Atomic # 17 Polarization: -0.23 SS G_CDS: -0.08 Total: -0.31 kcal Total: -65.55 3.33 -62.22 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306378200.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.767 kcal (2) G-P(sol) polarization free energy of solvation -65.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds