Wall clock time and date at job start Mon Mar 30 2020 06:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86798 * 120.00090 * 2 1 4 4 H 1.48499 * 109.47101 * 269.99901 * 3 2 1 5 5 H 1.48505 * 109.46897 * 29.99466 * 3 2 1 6 6 H 1.48499 * 109.47403 * 149.99222 * 3 2 1 7 7 C 1.37876 * 120.00008 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99953 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99872 * 179.97438 * 7 2 1 10 10 H 1.09003 * 110.27389 * 57.91970 * 9 7 2 11 11 C 1.54945 * 110.30698 * 180.02562 * 9 7 2 12 12 C 1.55307 * 100.94248 * 155.36244 * 11 9 7 13 13 C 1.54383 * 102.25355 * 325.86865 * 12 11 9 14 14 H 1.08997 * 109.82886 * 261.84487 * 13 12 11 15 15 C 1.50697 * 109.83313 * 140.86665 * 13 12 11 16 16 C 1.38476 * 122.55694 * 265.00398 * 15 13 12 17 17 C 1.33347 * 114.92759 * 180.02562 * 16 15 13 18 18 S 1.75883 * 109.62471 * 359.97438 * 17 16 15 19 19 C 1.33501 * 122.55812 * 84.71489 * 15 13 12 20 20 Cl 1.73601 * 125.20450 * 359.97438 * 19 15 13 21 21 O 1.43236 * 107.58617 * 21.35375 * 13 12 11 22 22 H 0.96997 * 119.99749 * 0.02562 * 1 2 3 23 23 H 1.08998 * 111.12670 * 37.44624 * 11 9 7 24 24 H 1.08998 * 111.13039 * 273.27956 * 11 9 7 25 25 H 1.09006 * 110.84840 * 84.05760 * 12 11 9 26 26 H 1.08995 * 110.85125 * 207.67776 * 12 11 9 27 27 H 1.07994 * 122.53776 * 0.02562 * 16 15 13 28 28 H 1.07999 * 125.19019 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7002 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0000 10 1 3.8896 -0.6504 0.8658 11 6 4.0494 -2.6471 0.0001 12 6 5.4513 -2.4427 -0.6362 13 6 5.1923 -1.2976 -1.6387 14 1 5.0431 -1.7074 -2.6376 15 6 6.3623 -0.3478 -1.6434 16 6 6.3912 0.8027 -0.8733 17 6 7.5005 1.5327 -0.9950 18 16 8.5945 0.7594 -2.1346 19 6 7.4523 -0.5543 -2.3860 20 17 7.7026 -1.9101 -3.4409 21 8 4.0098 -0.6098 -1.2141 22 1 -0.4849 0.8400 -0.0004 23 1 3.4284 -3.2959 -0.6177 24 1 4.1316 -3.0356 1.0152 25 1 6.1791 -2.1414 0.1173 26 1 5.7778 -3.3448 -1.1536 27 1 5.5770 1.0873 -0.2233 28 1 7.6975 2.4573 -0.4728 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306378201.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:09 Heat of formation + Delta-G solvation = -18.213878 kcal Electronic energy + Delta-G solvation = -15155.154967 eV Core-core repulsion = 12516.820226 eV Total energy + Delta-G solvation = -2638.334741 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 258.022 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.34041 -37.16994 -36.38212 -32.62878 -31.33901 -30.27585 -28.18124 -25.03149 -23.23713 -21.22757 -20.35083 -18.75678 -17.79219 -16.97484 -16.12026 -15.20360 -14.73389 -13.96548 -13.73291 -13.69276 -13.01860 -12.94723 -12.61730 -12.50874 -11.93234 -11.58358 -11.18581 -11.07057 -10.90254 -10.78365 -10.63911 -10.51147 -9.92702 -9.69717 -9.52357 -8.65566 -8.56054 -8.49964 -8.19507 -6.13783 -4.22551 0.88387 1.17434 1.85017 2.33870 2.73351 3.36715 3.41681 3.50162 4.44315 4.74045 4.96990 5.23044 5.27558 5.38211 5.49612 5.60485 5.90379 5.94756 6.11149 6.21031 6.34754 6.39946 6.45473 6.63675 6.64994 7.17277 7.58150 8.21314 8.40519 8.87804 9.49161 10.96834 Molecular weight = 258.02amu Principal moments of inertia in cm(-1) A = 0.027611 B = 0.007640 C = 0.006459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.842325 B = 3664.144466 C = 4334.011886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.083 3.917 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.297 1.297 6 H -0.266 1.266 7 C -0.519 4.519 8 H 0.080 0.920 9 C 0.167 3.833 10 H 0.033 0.967 11 C -0.134 4.134 12 C -0.143 4.143 13 C 0.132 3.868 14 H 0.082 0.918 15 C -0.078 4.078 16 C -0.104 4.104 17 C -0.209 4.209 18 S 0.114 5.886 19 C -0.152 4.152 20 Cl -0.018 7.018 21 O -0.375 6.375 22 H 0.266 0.734 23 H 0.073 0.927 24 H 0.069 0.931 25 H 0.068 0.932 26 H 0.072 0.928 27 H 0.154 0.846 28 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.293 -0.082 -2.989 17.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.121 4.121 3 Si 0.727 3.273 4 H -0.198 1.198 5 H -0.225 1.225 6 H -0.191 1.191 7 C -0.556 4.556 8 H 0.098 0.902 9 C 0.113 3.887 10 H 0.051 0.949 11 C -0.172 4.172 12 C -0.181 4.181 13 C 0.071 3.929 14 H 0.100 0.900 15 C -0.093 4.093 16 C -0.134 4.134 17 C -0.345 4.345 18 S 0.375 5.625 19 C -0.295 4.295 20 Cl 0.010 6.990 21 O -0.295 6.295 22 H 0.076 0.924 23 H 0.092 0.908 24 H 0.087 0.913 25 H 0.086 0.914 26 H 0.091 0.909 27 H 0.171 0.829 28 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 18.515 0.431 -3.754 18.896 hybrid contribution -0.861 0.337 0.445 1.026 sum 17.654 0.768 -3.309 17.978 Atomic orbital electron populations 1.69926 1.06569 1.27437 1.48963 1.25070 0.94697 0.99759 0.92606 0.86482 0.79563 0.82408 0.78893 1.19794 1.22457 1.19064 1.21052 0.87751 0.94877 1.51875 0.90198 1.21159 0.95150 0.88633 0.83802 0.94923 1.23155 0.93676 0.99945 1.00422 1.23082 0.99025 0.97686 0.98352 1.21204 0.83737 0.89237 0.98748 0.90037 1.19593 0.95843 0.97876 0.95979 1.20109 0.98726 0.93823 1.00758 1.25639 0.98220 1.05424 1.05195 1.84072 1.20337 1.15284 1.42783 1.24840 1.01029 0.98039 1.05576 1.98337 1.96093 1.41064 1.63498 1.88671 1.38229 1.57838 1.44793 0.92440 0.90779 0.91253 0.91360 0.90927 0.82879 0.81277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.19 13.96 55.43 0.77 -26.42 15 2 C 0.08 2.41 5.47 -17.82 -0.10 2.32 15 3 Si 0.90 22.56 26.47 -169.99 -4.50 18.06 15 4 H -0.27 -6.98 7.11 56.52 0.40 -6.58 15 5 H -0.30 -7.36 7.11 56.52 0.40 -6.96 15 6 H -0.27 -6.24 5.95 56.52 0.34 -5.91 15 7 C -0.52 -14.59 9.37 -34.44 -0.32 -14.91 15 8 H 0.08 2.39 8.00 -52.48 -0.42 1.97 15 9 C 0.17 3.94 2.67 -26.86 -0.07 3.87 15 10 H 0.03 0.78 7.08 -51.93 -0.37 0.41 15 11 C -0.13 -2.59 6.53 -24.48 -0.16 -2.75 15 12 C -0.14 -2.39 6.53 -24.78 -0.16 -2.55 15 13 C 0.13 2.47 3.50 -27.16 -0.10 2.38 15 14 H 0.08 1.50 7.70 -51.93 -0.40 1.10 15 15 C -0.08 -1.34 4.84 -106.19 -0.51 -1.85 15 16 C -0.10 -1.73 9.51 -41.20 -0.39 -2.12 15 17 C -0.21 -2.80 11.22 29.02 0.33 -2.47 15 18 S 0.11 1.43 23.34 -107.50 -2.51 -1.08 15 19 C -0.15 -2.27 7.07 29.07 0.21 -2.06 15 20 Cl -0.02 -0.25 28.44 -51.86 -1.47 -1.72 15 21 O -0.37 -8.73 8.01 -35.23 -0.28 -9.02 15 22 H 0.27 7.59 8.31 -40.82 -0.34 7.25 15 23 H 0.07 1.46 8.04 -51.93 -0.42 1.04 15 24 H 0.07 1.22 8.14 -51.93 -0.42 0.79 15 25 H 0.07 1.08 7.84 -51.93 -0.41 0.67 15 26 H 0.07 1.06 8.14 -51.93 -0.42 0.63 15 27 H 0.15 2.81 7.16 -52.49 -0.38 2.43 15 28 H 0.17 1.76 8.06 -52.49 -0.42 1.34 15 LS Contribution 265.58 15.07 4.00 4.00 Total: -1.00 -29.98 265.58 -8.13 -38.11 By element: Atomic # 1 Polarization: 1.07 SS G_CDS: -2.86 Total: -1.78 kcal Atomic # 6 Polarization: -18.87 SS G_CDS: -1.28 Total: -20.16 kcal Atomic # 7 Polarization: -27.19 SS G_CDS: 0.77 Total: -26.42 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: -0.28 Total: -9.02 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -4.50 Total: 18.06 kcal Atomic # 16 Polarization: 1.43 SS G_CDS: -2.51 Total: -1.08 kcal Atomic # 17 Polarization: -0.25 SS G_CDS: -1.47 Total: -1.72 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -29.98 -8.13 -38.11 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306378201.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.896 kcal (2) G-P(sol) polarization free energy of solvation -29.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds