Wall clock time and date at job start Mon Mar 30 2020 06:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48493 * 109.47326 * 90.00391 * 3 2 1 5 5 H 1.48506 * 109.46545 * 210.00141 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99852 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99349 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00472 * 359.97438 * 7 2 1 10 10 H 1.08996 * 110.33378 * 60.79587 * 9 7 2 11 11 C 1.54473 * 110.37390 * 183.16994 * 9 7 2 12 12 C 1.54509 * 104.06630 * 142.80882 * 11 9 7 13 13 C 1.54480 * 104.06323 * 359.97438 * 12 11 9 14 14 H 1.09003 * 110.46639 * 94.89541 * 13 12 11 15 15 C 1.50696 * 110.37123 * 217.19379 * 13 12 11 16 16 C 1.33403 * 125.19057 * 261.82946 * 15 13 12 17 17 C 1.38479 * 114.91170 * 180.02562 * 16 15 13 18 18 Cl 1.73602 * 122.55266 * 179.97438 * 17 16 15 19 19 C 1.33437 * 114.89895 * 359.97438 * 17 16 15 20 20 S 1.75872 * 125.20006 * 81.52959 * 15 13 12 21 21 O 1.44425 * 104.79816 * 336.02145 * 13 12 11 22 22 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 23 23 H 1.09000 * 110.50898 * 261.45380 * 11 9 7 24 24 H 1.09000 * 110.51283 * 24.16207 * 11 9 7 25 25 H 1.08999 * 110.51160 * 241.35293 * 12 11 9 26 26 H 1.08999 * 110.51138 * 118.64264 * 12 11 9 27 27 H 1.08001 * 122.54876 * 359.97438 * 16 15 13 28 28 H 1.08008 * 125.20480 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5467 1.4400 -0.7001 6 1 1.4466 2.6526 -0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 1 0.6293 -2.5776 -0.8924 11 6 2.2342 -3.6879 0.0789 12 6 1.5111 -4.7138 0.9800 13 6 0.1766 -4.0232 1.3390 14 1 -0.6111 -4.3366 0.6539 15 6 -0.2105 -4.3373 2.7611 16 6 -1.0774 -5.2813 3.1313 17 6 -1.2762 -5.3872 4.4977 18 17 -2.3617 -6.5479 5.1965 19 6 -0.5700 -4.5292 5.2363 20 16 0.4169 -3.5204 4.1866 21 8 0.4402 -2.6111 1.1898 22 1 -0.4850 0.8401 0.0004 23 1 2.4084 -4.1063 -0.9124 24 1 3.1744 -3.3761 0.5336 25 1 2.0939 -4.9091 1.8802 26 1 1.3278 -5.6393 0.4342 27 1 -1.5863 -5.9143 2.4194 28 1 -0.5972 -4.4664 6.3142 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306387541.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:29 Heat of formation + Delta-G solvation = -24.142605 kcal Electronic energy + Delta-G solvation = -14709.461955 eV Core-core repulsion = 12070.870125 eV Total energy + Delta-G solvation = -2638.591830 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 258.022 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.63497 -37.56966 -35.87506 -32.74922 -31.04993 -30.46525 -27.59276 -24.93246 -23.16513 -21.23154 -20.17505 -19.08893 -17.31232 -16.57146 -15.66148 -15.21019 -14.51930 -14.11228 -13.84143 -13.54461 -12.91333 -12.82681 -12.36248 -12.18819 -11.71179 -11.53598 -11.05286 -10.96149 -10.75155 -10.56773 -10.55099 -10.37995 -10.11070 -9.82378 -9.21342 -8.68741 -8.48180 -8.23139 -8.09338 -6.07011 -4.20274 1.09721 1.55365 2.07258 2.67009 2.78809 3.28425 3.35080 3.37170 4.37799 4.75400 5.10779 5.26322 5.42308 5.50314 5.53750 5.66953 5.94647 6.05950 6.13484 6.25165 6.33743 6.51050 6.56060 6.68785 6.73383 7.40822 7.82965 8.11134 8.38900 8.89390 9.50657 11.00581 Molecular weight = 258.02amu Principal moments of inertia in cm(-1) A = 0.034873 B = 0.005441 C = 0.005108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.725639 B = 5144.431241 C = 5480.352867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.077 3.923 3 Si 0.892 3.108 4 H -0.278 1.278 5 H -0.272 1.272 6 H -0.285 1.285 7 C -0.532 4.532 8 H 0.065 0.935 9 C 0.205 3.795 10 H 0.029 0.971 11 C -0.146 4.146 12 C -0.143 4.143 13 C 0.126 3.874 14 H 0.073 0.927 15 C -0.133 4.133 16 C -0.154 4.154 17 C -0.039 4.039 18 Cl -0.068 7.068 19 C -0.244 4.244 20 S 0.201 5.799 21 O -0.341 6.341 22 H 0.262 0.738 23 H 0.057 0.943 24 H 0.066 0.934 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.145 0.855 28 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.019 -10.519 7.394 12.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.129 4.129 3 Si 0.719 3.281 4 H -0.204 1.204 5 H -0.197 1.197 6 H -0.211 1.211 7 C -0.569 4.569 8 H 0.083 0.917 9 C 0.150 3.850 10 H 0.047 0.953 11 C -0.184 4.184 12 C -0.182 4.182 13 C 0.065 3.935 14 H 0.090 0.910 15 C -0.252 4.252 16 C -0.183 4.183 17 C -0.079 4.079 18 Cl -0.040 7.040 19 C -0.381 4.381 20 S 0.465 5.535 21 O -0.260 6.260 22 H 0.072 0.928 23 H 0.076 0.924 24 H 0.085 0.915 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.163 0.837 28 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -0.315 -9.153 7.839 12.055 hybrid contribution -0.759 -0.563 -0.178 0.962 sum -1.074 -9.715 7.661 12.419 Atomic orbital electron populations 1.70032 1.06033 1.26753 1.46864 1.25090 0.94807 0.99389 0.93608 0.86603 0.79929 0.83209 0.78321 1.20397 1.19696 1.21071 1.21013 0.92679 0.89610 1.53595 0.91664 1.20580 0.86849 0.92785 0.84775 0.95350 1.23063 1.00708 0.96579 0.98074 1.22971 0.96327 0.98716 1.00159 1.21229 0.96343 0.88228 0.87724 0.90958 1.24622 1.01292 0.99602 0.99675 1.19645 1.02307 1.02342 0.94054 1.19648 0.98850 0.96553 0.92848 1.98330 1.63219 1.58293 1.84158 1.25721 1.05362 1.02655 1.04381 1.84820 1.40451 1.34137 0.94052 1.89586 1.72396 1.16051 1.48015 0.92804 0.92374 0.91489 0.91695 0.91656 0.83713 0.81425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.17 12.94 55.43 0.72 -24.46 15 2 C 0.08 2.15 5.42 -17.82 -0.10 2.06 15 3 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 15 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 15 5 H -0.27 -6.25 7.11 56.52 0.40 -5.85 15 6 H -0.29 -6.65 7.11 56.52 0.40 -6.25 15 7 C -0.53 -14.56 8.78 -34.44 -0.30 -14.87 15 8 H 0.07 1.73 7.59 -52.49 -0.40 1.33 15 9 C 0.21 5.13 3.11 -27.11 -0.08 5.05 15 10 H 0.03 0.76 8.14 -51.93 -0.42 0.34 15 11 C -0.15 -2.92 6.61 -25.17 -0.17 -3.09 15 12 C -0.14 -2.49 6.62 -25.16 -0.17 -2.66 15 13 C 0.13 2.46 3.73 -27.11 -0.10 2.36 15 14 H 0.07 1.36 8.14 -51.93 -0.42 0.94 15 15 C -0.13 -2.35 5.45 -36.00 -0.20 -2.54 15 16 C -0.15 -2.38 9.94 -41.18 -0.41 -2.79 15 17 C -0.04 -0.56 6.27 -41.17 -0.26 -0.82 15 18 Cl -0.07 -0.87 29.11 -51.86 -1.51 -2.38 15 19 C -0.24 -3.43 11.08 29.05 0.32 -3.11 15 20 S 0.20 3.33 23.06 -107.50 -2.48 0.85 15 21 O -0.34 -8.54 10.31 -35.23 -0.36 -8.90 15 22 H 0.26 7.26 8.31 -40.82 -0.34 6.92 15 23 H 0.06 1.05 8.14 -51.93 -0.42 0.62 15 24 H 0.07 1.35 7.72 -51.93 -0.40 0.95 15 25 H 0.06 1.08 7.86 -51.93 -0.41 0.67 15 26 H 0.06 0.97 8.14 -51.93 -0.42 0.54 15 27 H 0.15 1.99 8.06 -52.49 -0.42 1.57 15 28 H 0.17 1.92 8.06 -52.48 -0.42 1.49 15 LS Contribution 273.46 15.07 4.12 4.12 Total: -1.00 -29.15 273.46 -8.87 -38.02 By element: Atomic # 1 Polarization: 0.02 SS G_CDS: -2.88 Total: -2.86 kcal Atomic # 6 Polarization: -18.96 SS G_CDS: -1.46 Total: -20.42 kcal Atomic # 7 Polarization: -25.17 SS G_CDS: 0.72 Total: -24.46 kcal Atomic # 8 Polarization: -8.54 SS G_CDS: -0.36 Total: -8.90 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: 3.33 SS G_CDS: -2.48 Total: 0.85 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -1.51 Total: -2.38 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -29.15 -8.87 -38.02 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306387541.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.876 kcal (2) G-P(sol) polarization free energy of solvation -29.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds