Wall clock time and date at job start Mon Mar 30 2020 06:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48493 * 109.47326 * 90.00391 * 3 2 1 5 5 H 1.48506 * 109.46545 * 210.00141 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99852 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99349 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00472 * 359.97438 * 7 2 1 10 10 H 1.08996 * 110.33378 * 60.79587 * 9 7 2 11 11 C 1.54473 * 110.37390 * 183.16994 * 9 7 2 12 12 C 1.54509 * 104.06630 * 142.80882 * 11 9 7 13 13 C 1.54480 * 104.06323 * 359.97438 * 12 11 9 14 14 H 1.09003 * 110.46639 * 94.89541 * 13 12 11 15 15 C 1.50696 * 110.37123 * 217.19379 * 13 12 11 16 16 C 1.33403 * 125.19057 * 261.82946 * 15 13 12 17 17 C 1.38479 * 114.91170 * 180.02562 * 16 15 13 18 18 Cl 1.73602 * 122.55266 * 179.97438 * 17 16 15 19 19 C 1.33437 * 114.89895 * 359.97438 * 17 16 15 20 20 S 1.75872 * 125.20006 * 81.52959 * 15 13 12 21 21 O 1.44425 * 104.79816 * 336.02145 * 13 12 11 22 22 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 23 23 H 1.09000 * 110.50898 * 261.45380 * 11 9 7 24 24 H 1.09000 * 110.51283 * 24.16207 * 11 9 7 25 25 H 1.08999 * 110.51160 * 241.35293 * 12 11 9 26 26 H 1.08999 * 110.51138 * 118.64264 * 12 11 9 27 27 H 1.08001 * 122.54876 * 359.97438 * 16 15 13 28 28 H 1.08008 * 125.20480 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5467 1.4400 -0.7001 6 1 1.4466 2.6526 -0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 1 0.6293 -2.5776 -0.8924 11 6 2.2342 -3.6879 0.0789 12 6 1.5111 -4.7138 0.9800 13 6 0.1766 -4.0232 1.3390 14 1 -0.6111 -4.3366 0.6539 15 6 -0.2105 -4.3373 2.7611 16 6 -1.0774 -5.2813 3.1313 17 6 -1.2762 -5.3872 4.4977 18 17 -2.3617 -6.5479 5.1965 19 6 -0.5700 -4.5292 5.2363 20 16 0.4169 -3.5204 4.1866 21 8 0.4402 -2.6111 1.1898 22 1 -0.4850 0.8401 0.0004 23 1 2.4084 -4.1063 -0.9124 24 1 3.1744 -3.3761 0.5336 25 1 2.0939 -4.9091 1.8802 26 1 1.3278 -5.6393 0.4342 27 1 -1.5863 -5.9143 2.4194 28 1 -0.5972 -4.4664 6.3142 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306387541.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:29 Heat of formation + Delta-G solvation = -40.577845 kcal Electronic energy + Delta-G solvation = -14710.174640 eV Core-core repulsion = 12070.870125 eV Total energy + Delta-G solvation = -2639.304515 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 258.022 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.18233 -38.88137 -37.01336 -34.76522 -32.68808 -31.99802 -29.21576 -26.60819 -24.62353 -22.84239 -21.78711 -20.36006 -18.89835 -18.29996 -17.00017 -16.82586 -16.35732 -15.79993 -15.41948 -14.77098 -14.33790 -14.13164 -14.04064 -13.70642 -13.35245 -12.87833 -12.76356 -12.42602 -12.27002 -12.18059 -11.95779 -11.89577 -11.68002 -11.41114 -11.06953 -10.73342 -10.17613 -9.68149 -9.35187 -8.16574 -6.36600 -0.12090 0.36455 0.82794 1.41123 1.42309 1.47272 1.52760 1.63753 2.40421 3.03820 3.49893 3.83588 4.00245 4.04381 4.18073 4.39351 4.49863 4.58526 4.76007 4.85162 4.98136 5.04451 5.11733 5.18295 5.23387 5.51125 5.73407 6.13407 6.48371 6.87787 7.38751 8.91575 Molecular weight = 258.02amu Principal moments of inertia in cm(-1) A = 0.034873 B = 0.005441 C = 0.005108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.725639 B = 5144.431241 C = 5480.352867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.024 3.976 3 Si 0.959 3.041 4 H -0.276 1.276 5 H -0.260 1.260 6 H -0.281 1.281 7 C -0.551 4.551 8 H 0.067 0.933 9 C 0.196 3.804 10 H -0.002 1.002 11 C -0.138 4.138 12 C -0.131 4.131 13 C 0.119 3.881 14 H 0.073 0.927 15 C -0.163 4.163 16 C -0.137 4.137 17 C -0.051 4.051 18 Cl -0.047 7.047 19 C -0.218 4.218 20 S 0.162 5.838 21 O -0.374 6.374 22 H 0.262 0.738 23 H 0.077 0.923 24 H 0.062 0.938 25 H 0.073 0.927 26 H 0.097 0.903 27 H 0.162 0.838 28 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.695 -11.702 8.416 14.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.179 4.179 3 Si 0.783 3.217 4 H -0.202 1.202 5 H -0.184 1.184 6 H -0.207 1.207 7 C -0.588 4.588 8 H 0.085 0.915 9 C 0.141 3.859 10 H 0.016 0.984 11 C -0.176 4.176 12 C -0.169 4.169 13 C 0.059 3.941 14 H 0.091 0.909 15 C -0.281 4.281 16 C -0.167 4.167 17 C -0.091 4.091 18 Cl -0.019 7.019 19 C -0.355 4.355 20 S 0.426 5.574 21 O -0.294 6.294 22 H 0.071 0.929 23 H 0.096 0.904 24 H 0.081 0.919 25 H 0.092 0.908 26 H 0.116 0.884 27 H 0.179 0.821 28 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 0.020 -10.355 8.859 13.628 hybrid contribution -0.950 -0.307 -0.438 1.090 sum -0.930 -10.663 8.421 13.619 Atomic orbital electron populations 1.70170 1.07649 1.27469 1.48477 1.25943 0.95608 1.03055 0.93271 0.85557 0.78975 0.78781 0.78349 1.20173 1.18428 1.20667 1.21451 0.93103 0.91149 1.53104 0.91468 1.20473 0.87440 0.94067 0.83930 0.98446 1.22934 0.99375 0.95447 0.99860 1.22920 0.94755 0.98910 1.00280 1.21373 0.97538 0.85765 0.89380 0.90922 1.24406 1.03476 1.01404 0.98801 1.19865 1.00657 1.01222 0.94993 1.19695 0.99509 0.97293 0.92599 1.98341 1.62425 1.57390 1.83741 1.25966 1.03425 1.00806 1.05317 1.84920 1.41884 1.35581 0.94991 1.89487 1.72695 1.19791 1.47474 0.92940 0.90443 0.91875 0.90829 0.88419 0.82085 0.78592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.19 12.94 21.45 0.28 -53.91 15 2 C 0.02 1.33 5.42 84.66 0.46 1.79 15 3 Si 0.96 43.74 29.54 68.60 2.03 45.77 15 4 H -0.28 -12.40 7.11 99.48 0.71 -11.70 15 5 H -0.26 -11.24 7.11 99.48 0.71 -10.53 15 6 H -0.28 -12.53 7.11 99.48 0.71 -11.83 15 7 C -0.55 -30.76 8.78 25.60 0.22 -30.54 15 8 H 0.07 3.60 7.59 -2.91 -0.02 3.58 15 9 C 0.20 10.06 3.11 30.35 0.09 10.15 15 10 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 15 11 C -0.14 -5.45 6.61 31.61 0.21 -5.24 15 12 C -0.13 -4.34 6.62 31.61 0.21 -4.14 15 13 C 0.12 4.65 3.73 30.35 0.11 4.77 15 14 H 0.07 2.75 8.14 -2.39 -0.02 2.73 15 15 C -0.16 -5.59 5.45 24.59 0.13 -5.46 15 16 C -0.14 -3.99 9.94 21.23 0.21 -3.78 15 17 C -0.05 -1.36 6.27 21.24 0.13 -1.23 15 18 Cl -0.05 -1.07 29.11 -2.72 -0.08 -1.15 15 19 C -0.22 -5.62 11.08 66.73 0.74 -4.88 15 20 S 0.16 5.27 23.06 -56.49 -1.30 3.97 15 21 O -0.37 -19.22 10.31 -148.98 -1.54 -20.76 15 22 H 0.26 14.90 8.31 -92.70 -0.77 14.13 15 23 H 0.08 2.69 8.14 -2.39 -0.02 2.67 15 24 H 0.06 2.50 7.72 -2.39 -0.02 2.49 15 25 H 0.07 2.32 7.86 -2.39 -0.02 2.30 15 26 H 0.10 2.61 8.14 -2.39 -0.02 2.59 15 27 H 0.16 4.05 8.06 -2.91 -0.02 4.03 15 28 H 0.20 3.82 8.06 -2.91 -0.02 3.80 15 Total: -1.00 -63.58 273.46 3.08 -60.50 By element: Atomic # 1 Polarization: 2.95 SS G_CDS: 1.17 Total: 4.12 kcal Atomic # 6 Polarization: -41.07 SS G_CDS: 2.53 Total: -38.54 kcal Atomic # 7 Polarization: -54.19 SS G_CDS: 0.28 Total: -53.91 kcal Atomic # 8 Polarization: -19.22 SS G_CDS: -1.54 Total: -20.76 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Atomic # 16 Polarization: 5.27 SS G_CDS: -1.30 Total: 3.97 kcal Atomic # 17 Polarization: -1.07 SS G_CDS: -0.08 Total: -1.15 kcal Total: -63.58 3.08 -60.50 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306387541.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.924 kcal (2) G-P(sol) polarization free energy of solvation -63.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds