Wall clock time and date at job start Mon Mar 30 2020 06:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00215 * 2 1 4 4 H 1.48506 * 109.46969 * 270.00009 * 3 2 1 5 5 H 1.48496 * 109.46980 * 29.99759 * 3 2 1 6 6 H 1.48494 * 109.47134 * 150.00079 * 3 2 1 7 7 C 1.37883 * 119.99831 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99912 * 359.97438 * 7 2 1 9 9 C 1.50693 * 119.99999 * 179.97438 * 7 2 1 10 10 H 1.09007 * 110.27535 * 57.91014 * 9 7 2 11 11 C 1.54946 * 110.31293 * 179.97438 * 9 7 2 12 12 C 1.55307 * 100.94490 * 155.35741 * 11 9 7 13 13 C 1.54384 * 102.25282 * 325.87492 * 12 11 9 14 14 H 1.09002 * 109.82533 * 261.74893 * 13 12 11 15 15 C 1.50696 * 109.82886 * 140.86751 * 13 12 11 16 16 C 1.33407 * 125.19570 * 100.18938 * 15 13 12 17 17 C 1.38476 * 114.91048 * 180.30555 * 16 15 13 18 18 Cl 1.73602 * 122.54970 * 179.72535 * 17 16 15 19 19 C 1.33443 * 114.89903 * 359.48235 * 17 16 15 20 20 S 1.75878 * 125.19540 * 280.21892 * 15 13 12 21 21 O 1.43236 * 107.66733 * 21.30379 * 13 12 11 22 22 H 0.97000 * 119.99859 * 0.02562 * 1 2 3 23 23 H 1.09003 * 111.11599 * 37.44279 * 11 9 7 24 24 H 1.08994 * 111.16290 * 273.29785 * 11 9 7 25 25 H 1.09001 * 110.84946 * 207.67875 * 12 11 9 26 26 H 1.08997 * 110.84107 * 84.05894 * 12 11 9 27 27 H 1.08002 * 122.54152 * 0.02568 * 16 15 13 28 28 H 1.07996 * 125.19822 * 180.21333 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5114 -1.1942 -0.0011 10 1 3.8895 -0.6512 0.8652 11 6 4.0493 -2.6473 -0.0010 12 6 5.4511 -2.4429 -0.6374 13 6 5.1921 -1.2977 -1.6398 14 1 5.0445 -1.7074 -2.6391 15 6 6.3621 -0.3480 -1.6445 16 6 7.3349 -0.3308 -2.5574 17 6 8.3111 0.6295 -2.3514 18 17 9.6705 0.8222 -3.4138 19 6 8.1246 1.3988 -1.2772 20 16 6.6543 0.9066 -0.4470 21 8 4.0092 -0.6094 -1.2173 22 1 -0.4850 0.8401 -0.0004 23 1 3.4282 -3.2959 -0.6188 24 1 4.1314 -3.0364 1.0138 25 1 5.7776 -3.3450 -1.1548 26 1 6.1789 -2.1416 0.1161 27 1 7.3614 -1.0169 -3.3910 28 1 8.7790 2.1984 -0.9630 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306387544.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:35 Heat of formation + Delta-G solvation = -21.134088 kcal Electronic energy + Delta-G solvation = -14882.481739 eV Core-core repulsion = 12244.020369 eV Total energy + Delta-G solvation = -2638.461371 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 258.022 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.96787 -37.77685 -36.00491 -32.75445 -31.44572 -30.72444 -28.04730 -25.04490 -23.24244 -21.16083 -20.40218 -19.37457 -17.40588 -16.90750 -16.01318 -15.37216 -15.12474 -13.99556 -13.88238 -13.52391 -13.07355 -12.84870 -12.61480 -12.43320 -12.01696 -11.67139 -11.20323 -11.05926 -10.82770 -10.81155 -10.64614 -10.56278 -10.05521 -9.73118 -9.58792 -8.73005 -8.67578 -8.45891 -8.23369 -6.16821 -4.26415 0.94089 1.39355 1.89846 2.52846 2.64206 3.38011 3.43137 3.52429 4.43086 4.60990 4.86202 5.06431 5.14639 5.32855 5.37780 5.51104 5.78531 5.82440 5.98415 6.02747 6.16684 6.26772 6.31364 6.47619 6.56132 7.09604 7.53072 8.10026 8.36366 8.83983 9.45798 10.93374 Molecular weight = 258.02amu Principal moments of inertia in cm(-1) A = 0.032299 B = 0.006571 C = 0.005883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.687917 B = 4260.245082 C = 4758.027623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.085 3.915 3 Si 0.891 3.109 4 H -0.272 1.272 5 H -0.296 1.296 6 H -0.261 1.261 7 C -0.520 4.520 8 H 0.081 0.919 9 C 0.166 3.834 10 H 0.034 0.966 11 C -0.135 4.135 12 C -0.147 4.147 13 C 0.141 3.859 14 H 0.091 0.909 15 C -0.154 4.154 16 C -0.149 4.149 17 C -0.039 4.039 18 Cl -0.065 7.065 19 C -0.236 4.236 20 S 0.176 5.824 21 O -0.375 6.375 22 H 0.267 0.733 23 H 0.075 0.925 24 H 0.070 0.930 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.147 0.853 28 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.982 -0.060 -2.574 17.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.120 4.120 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.223 1.223 6 H -0.185 1.185 7 C -0.557 4.557 8 H 0.099 0.901 9 C 0.111 3.889 10 H 0.052 0.948 11 C -0.172 4.172 12 C -0.186 4.186 13 C 0.080 3.920 14 H 0.108 0.892 15 C -0.273 4.273 16 C -0.179 4.179 17 C -0.079 4.079 18 Cl -0.036 7.036 19 C -0.373 4.373 20 S 0.439 5.561 21 O -0.296 6.296 22 H 0.076 0.924 23 H 0.094 0.906 24 H 0.089 0.911 25 H 0.094 0.906 26 H 0.088 0.912 27 H 0.165 0.835 28 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 16.098 0.734 -1.458 16.180 hybrid contribution 1.409 0.378 -1.409 2.028 sum 17.507 1.112 -2.867 17.775 Atomic orbital electron populations 1.69918 1.06582 1.27534 1.48632 1.25068 0.94705 0.99785 0.92471 0.86549 0.79964 0.82410 0.79159 1.19740 1.22279 1.18517 1.21018 0.87607 0.94909 1.52128 0.90129 1.21230 0.95370 0.88621 0.83650 0.94802 1.23170 0.93552 0.99918 1.00594 1.23183 0.99206 0.97779 0.98386 1.21054 0.83003 0.88661 0.99275 0.89189 1.25385 1.01135 1.02088 0.98647 1.19697 0.94608 1.01509 1.02086 1.19710 0.93013 1.00163 0.94990 1.98339 1.43163 1.97075 1.65058 1.25660 1.03964 1.06654 1.00998 1.84858 1.15926 1.28768 1.26506 1.88784 1.37999 1.57816 1.44967 0.92369 0.90625 0.91086 0.90619 0.91222 0.83489 0.81277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.99 13.96 55.43 0.77 -26.22 15 2 C 0.08 2.45 5.47 -17.82 -0.10 2.35 15 3 Si 0.89 22.59 26.47 -169.99 -4.50 18.09 15 4 H -0.27 -7.03 7.11 56.52 0.40 -6.63 15 5 H -0.30 -7.37 7.11 56.52 0.40 -6.97 15 6 H -0.26 -6.24 6.49 56.52 0.37 -5.88 15 7 C -0.52 -14.46 9.37 -34.44 -0.32 -14.79 15 8 H 0.08 2.38 8.00 -52.49 -0.42 1.96 15 9 C 0.17 3.84 2.67 -26.86 -0.07 3.77 15 10 H 0.03 0.81 7.09 -51.93 -0.37 0.44 15 11 C -0.13 -2.50 6.53 -24.48 -0.16 -2.66 15 12 C -0.15 -2.29 6.53 -24.78 -0.16 -2.45 15 13 C 0.14 2.49 3.96 -27.16 -0.11 2.38 15 14 H 0.09 1.47 8.13 -51.93 -0.42 1.05 15 15 C -0.15 -2.51 5.36 -36.00 -0.19 -2.70 15 16 C -0.15 -2.14 9.93 -41.18 -0.41 -2.55 15 17 C -0.04 -0.53 6.27 -41.17 -0.26 -0.79 15 18 Cl -0.06 -0.77 29.11 -51.86 -1.51 -2.28 15 19 C -0.24 -3.16 11.08 29.06 0.32 -2.83 15 20 S 0.18 2.80 23.11 -107.50 -2.48 0.31 15 21 O -0.38 -8.55 8.66 -35.23 -0.31 -8.85 15 22 H 0.27 7.58 8.31 -40.82 -0.34 7.25 15 23 H 0.08 1.42 8.04 -51.93 -0.42 1.01 15 24 H 0.07 1.20 8.14 -51.93 -0.42 0.78 15 25 H 0.08 0.98 8.14 -51.93 -0.42 0.56 15 26 H 0.07 1.03 7.84 -51.93 -0.41 0.62 15 27 H 0.15 1.83 8.06 -52.49 -0.42 1.41 15 28 H 0.17 1.83 8.06 -52.49 -0.42 1.41 15 LS Contribution 268.98 15.07 4.05 4.05 Total: -1.00 -29.84 268.98 -8.33 -38.17 By element: Atomic # 1 Polarization: -0.11 SS G_CDS: -2.90 Total: -3.00 kcal Atomic # 6 Polarization: -18.81 SS G_CDS: -1.46 Total: -20.27 kcal Atomic # 7 Polarization: -26.99 SS G_CDS: 0.77 Total: -26.22 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: -0.31 Total: -8.85 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -4.50 Total: 18.09 kcal Atomic # 16 Polarization: 2.80 SS G_CDS: -2.48 Total: 0.31 kcal Atomic # 17 Polarization: -0.77 SS G_CDS: -1.51 Total: -2.28 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -29.84 -8.33 -38.17 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306387544.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.035 kcal (2) G-P(sol) polarization free energy of solvation -29.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds