Wall clock time and date at job start Mon Mar 30 2020 06:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00215 * 2 1 4 4 H 1.48506 * 109.46969 * 270.00009 * 3 2 1 5 5 H 1.48496 * 109.46980 * 29.99759 * 3 2 1 6 6 H 1.48494 * 109.47134 * 150.00079 * 3 2 1 7 7 C 1.37883 * 119.99831 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99912 * 359.97438 * 7 2 1 9 9 C 1.50693 * 119.99999 * 179.97438 * 7 2 1 10 10 H 1.09007 * 110.27535 * 57.91014 * 9 7 2 11 11 C 1.54946 * 110.31293 * 179.97438 * 9 7 2 12 12 C 1.55307 * 100.94490 * 155.35741 * 11 9 7 13 13 C 1.54384 * 102.25282 * 325.87492 * 12 11 9 14 14 H 1.09002 * 109.82533 * 261.74893 * 13 12 11 15 15 C 1.50696 * 109.82886 * 140.86751 * 13 12 11 16 16 C 1.33407 * 125.19570 * 100.18938 * 15 13 12 17 17 C 1.38476 * 114.91048 * 180.30555 * 16 15 13 18 18 Cl 1.73602 * 122.54970 * 179.72535 * 17 16 15 19 19 C 1.33443 * 114.89903 * 359.48235 * 17 16 15 20 20 S 1.75878 * 125.19540 * 280.21892 * 15 13 12 21 21 O 1.43236 * 107.66733 * 21.30379 * 13 12 11 22 22 H 0.97000 * 119.99859 * 0.02562 * 1 2 3 23 23 H 1.09003 * 111.11599 * 37.44279 * 11 9 7 24 24 H 1.08994 * 111.16290 * 273.29785 * 11 9 7 25 25 H 1.09001 * 110.84946 * 207.67875 * 12 11 9 26 26 H 1.08997 * 110.84107 * 84.05894 * 12 11 9 27 27 H 1.08002 * 122.54152 * 0.02568 * 16 15 13 28 28 H 1.07996 * 125.19822 * 180.21333 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5114 -1.1942 -0.0011 10 1 3.8895 -0.6512 0.8652 11 6 4.0493 -2.6473 -0.0010 12 6 5.4511 -2.4429 -0.6374 13 6 5.1921 -1.2977 -1.6398 14 1 5.0445 -1.7074 -2.6391 15 6 6.3621 -0.3480 -1.6445 16 6 7.3349 -0.3308 -2.5574 17 6 8.3111 0.6295 -2.3514 18 17 9.6705 0.8222 -3.4138 19 6 8.1246 1.3988 -1.2772 20 16 6.6543 0.9066 -0.4470 21 8 4.0092 -0.6094 -1.2173 22 1 -0.4850 0.8401 -0.0004 23 1 3.4282 -3.2959 -0.6188 24 1 4.1314 -3.0364 1.0138 25 1 5.7776 -3.3450 -1.1548 26 1 6.1789 -2.1416 0.1161 27 1 7.3614 -1.0169 -3.3910 28 1 8.7790 2.1984 -0.9630 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306387544.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:35 Heat of formation + Delta-G solvation = -38.903239 kcal Electronic energy + Delta-G solvation = -14883.252268 eV Core-core repulsion = 12244.020369 eV Total energy + Delta-G solvation = -2639.231899 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 258.022 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.42675 -38.95434 -37.04826 -34.83904 -32.93196 -32.22983 -29.57765 -26.61857 -24.60122 -22.51114 -22.12066 -20.50718 -19.04516 -18.54507 -17.34133 -16.91366 -16.67720 -15.72415 -15.16244 -14.76865 -14.71076 -14.25597 -14.13318 -13.94819 -13.36493 -12.94631 -12.78947 -12.50476 -12.36762 -12.25307 -12.01979 -11.84056 -11.61740 -11.55586 -11.37932 -10.87729 -10.31274 -9.73115 -9.41568 -8.37776 -6.50107 -0.17106 0.29605 0.76221 1.33277 1.40179 1.43962 1.49964 1.59248 2.34365 2.83793 3.47419 3.63319 3.78774 4.01861 4.15221 4.32773 4.42157 4.49142 4.62516 4.83411 4.92011 5.02983 5.06114 5.10768 5.16481 5.46373 5.51682 6.18240 6.39806 6.68035 7.26019 8.76294 Molecular weight = 258.02amu Principal moments of inertia in cm(-1) A = 0.032299 B = 0.006571 C = 0.005883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.687917 B = 4260.245082 C = 4758.027623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.031 3.969 3 Si 0.946 3.054 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.241 1.241 7 C -0.526 4.526 8 H 0.048 0.952 9 C 0.166 3.834 10 H 0.030 0.970 11 C -0.132 4.132 12 C -0.131 4.131 13 C 0.132 3.868 14 H 0.102 0.898 15 C -0.176 4.176 16 C -0.133 4.133 17 C -0.050 4.050 18 Cl -0.046 7.046 19 C -0.213 4.213 20 S 0.131 5.869 21 O -0.402 6.402 22 H 0.268 0.732 23 H 0.067 0.933 24 H 0.086 0.914 25 H 0.109 0.891 26 H 0.080 0.920 27 H 0.167 0.833 28 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.092 0.119 -3.173 20.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.169 4.169 3 Si 0.772 3.228 4 H -0.206 1.206 5 H -0.217 1.217 6 H -0.165 1.165 7 C -0.564 4.564 8 H 0.066 0.934 9 C 0.111 3.889 10 H 0.048 0.952 11 C -0.170 4.170 12 C -0.169 4.169 13 C 0.073 3.927 14 H 0.120 0.880 15 C -0.294 4.294 16 C -0.163 4.163 17 C -0.090 4.090 18 Cl -0.018 7.018 19 C -0.350 4.350 20 S 0.394 5.606 21 O -0.323 6.323 22 H 0.077 0.923 23 H 0.086 0.914 24 H 0.105 0.895 25 H 0.127 0.873 26 H 0.099 0.901 27 H 0.184 0.816 28 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 19.233 0.898 -2.057 19.363 hybrid contribution 0.541 0.266 -1.316 1.447 sum 19.774 1.163 -3.373 20.093 Atomic orbital electron populations 1.70036 1.08134 1.28367 1.51109 1.25857 0.95328 1.03149 0.92576 0.85672 0.79655 0.78681 0.78773 1.20586 1.21746 1.16475 1.21359 0.90562 0.93472 1.50958 0.93417 1.21015 0.92423 0.91638 0.83807 0.95205 1.23097 0.95243 0.96779 1.01878 1.23142 0.97244 0.98384 0.98114 1.21288 0.81795 0.89412 1.00253 0.88011 1.25127 1.01622 1.02846 0.99822 1.19931 0.93720 1.01176 1.01511 1.19788 0.93612 1.00110 0.95494 1.98351 1.42062 1.96999 1.64394 1.25879 1.02537 1.06557 1.00004 1.84977 1.18082 1.29827 1.27725 1.88647 1.40569 1.58686 1.44356 0.92266 0.91429 0.89529 0.87281 0.90107 0.81595 0.78743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.75 13.96 21.45 0.30 -58.45 15 2 C 0.03 1.83 5.47 84.66 0.46 2.30 15 3 Si 0.95 47.21 26.47 68.60 1.82 49.03 15 4 H -0.28 -14.21 7.11 99.48 0.71 -13.50 15 5 H -0.29 -14.07 7.11 99.48 0.71 -13.36 15 6 H -0.24 -11.13 6.49 99.48 0.65 -10.48 15 7 C -0.53 -30.04 9.37 25.60 0.24 -29.80 15 8 H 0.05 2.95 8.00 -2.91 -0.02 2.92 15 9 C 0.17 7.64 2.67 30.51 0.08 7.72 15 10 H 0.03 1.40 7.09 -2.38 -0.02 1.39 15 11 C -0.13 -4.72 6.53 32.05 0.21 -4.51 15 12 C -0.13 -3.68 6.53 31.86 0.21 -3.47 15 13 C 0.13 4.38 3.96 30.32 0.12 4.50 15 14 H 0.10 3.07 8.13 -2.39 -0.02 3.06 15 15 C -0.18 -5.28 5.36 24.59 0.13 -5.15 15 16 C -0.13 -3.38 9.93 21.23 0.21 -3.17 15 17 C -0.05 -1.20 6.27 21.24 0.13 -1.07 15 18 Cl -0.05 -0.95 29.11 -2.72 -0.08 -1.03 15 19 C -0.21 -5.01 11.08 66.73 0.74 -4.27 15 20 S 0.13 3.88 23.11 -56.49 -1.31 2.58 15 21 O -0.40 -17.93 8.66 -148.98 -1.29 -19.22 15 22 H 0.27 15.77 8.31 -92.71 -0.77 15.00 15 23 H 0.07 2.50 8.04 -2.39 -0.02 2.48 15 24 H 0.09 2.79 8.14 -2.39 -0.02 2.77 15 25 H 0.11 2.36 8.14 -2.39 -0.02 2.34 15 26 H 0.08 2.12 7.84 -2.39 -0.02 2.10 15 27 H 0.17 3.49 8.06 -2.91 -0.02 3.47 15 28 H 0.20 3.46 8.06 -2.91 -0.02 3.44 15 Total: -1.00 -65.51 268.98 3.08 -62.42 By element: Atomic # 1 Polarization: 0.50 SS G_CDS: 1.11 Total: 1.60 kcal Atomic # 6 Polarization: -39.46 SS G_CDS: 2.54 Total: -36.92 kcal Atomic # 7 Polarization: -58.75 SS G_CDS: 0.30 Total: -58.45 kcal Atomic # 8 Polarization: -17.93 SS G_CDS: -1.29 Total: -19.22 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 1.82 Total: 49.03 kcal Atomic # 16 Polarization: 3.88 SS G_CDS: -1.31 Total: 2.58 kcal Atomic # 17 Polarization: -0.95 SS G_CDS: -0.08 Total: -1.03 kcal Total: -65.51 3.08 -62.42 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306387544.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.519 kcal (2) G-P(sol) polarization free energy of solvation -65.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds