Wall clock time and date at job start Mon Mar 30 2020 06:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38549 * 119.72150 * 2 1 4 4 C 1.37904 * 120.24539 * 180.02562 * 3 2 1 5 5 F 1.35100 * 120.15557 * 179.97438 * 4 3 2 6 6 C 1.41012 * 119.68860 * 359.97438 * 4 3 2 7 7 C 1.41246 * 120.27010 * 180.02562 * 6 4 3 8 8 H 1.08006 * 119.99737 * 136.36124 * 7 6 4 9 9 C 1.39932 * 120.00529 * 316.36573 * 7 6 4 10 10 N 1.30849 * 120.00337 * 160.71415 * 9 7 6 11 11 Si 1.86801 * 119.99672 * 340.71623 * 9 7 6 12 12 H 1.48497 * 109.47349 * 95.26969 * 11 9 7 13 13 H 1.48505 * 109.47300 * 215.27296 * 11 9 7 14 14 H 1.48499 * 109.47152 * 335.26693 * 11 9 7 15 15 C 1.40806 * 119.45340 * 359.97438 * 6 4 3 16 16 Br 1.89107 * 120.12495 * 179.97438 * 15 6 4 17 17 C 1.37713 * 119.74776 * 0.02562 * 15 6 4 18 18 H 1.08995 * 109.47258 * 90.00466 * 1 2 3 19 19 H 1.09007 * 109.47214 * 210.00216 * 1 2 3 20 20 H 1.09001 * 109.47418 * 329.99976 * 1 2 3 21 21 H 1.07995 * 119.87847 * 0.27240 * 3 2 1 22 22 H 0.97001 * 119.99865 * 180.02562 * 10 9 7 23 23 H 1.08005 * 119.84610 * 179.97438 * 17 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1939 1.2032 0.0000 4 6 3.5728 1.2158 -0.0005 5 9 4.2408 2.3901 -0.0011 6 6 4.2824 -0.0027 -0.0005 7 6 5.6949 -0.0042 -0.0005 8 1 6.2342 -0.6816 0.6450 9 6 6.3955 0.8722 -0.8367 10 7 7.6492 1.1522 -0.5878 11 14 5.5410 1.6424 -2.3084 12 1 5.0252 2.9839 -1.9352 13 1 6.5078 1.7775 -3.4275 14 1 4.4106 0.7779 -2.7328 15 6 3.5713 -1.2180 0.0006 16 35 4.5037 -2.8633 -0.0001 17 6 2.1942 -1.2039 0.0011 18 1 -0.3633 -0.0001 -1.0276 19 1 -0.3634 -0.8900 0.5139 20 1 -0.3634 0.8900 0.5138 21 1 1.6474 2.1347 0.0045 22 1 8.1348 1.7599 -1.1672 23 1 1.6472 -2.1352 0.0015 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306746155.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:40 Heat of formation + Delta-G solvation = -48.273929 kcal Electronic energy + Delta-G solvation = -12039.990733 eV Core-core repulsion = 9619.711628 eV Total energy + Delta-G solvation = -2420.279104 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 257.975 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -49.64842 -39.63819 -35.79415 -33.74665 -32.21885 -29.93969 -29.49395 -25.46575 -23.16610 -21.97892 -19.82254 -17.66996 -17.41222 -17.02623 -16.31650 -15.74899 -15.00077 -14.63112 -14.31892 -14.17100 -13.72357 -13.27257 -13.10534 -12.68032 -12.54537 -12.16994 -12.02900 -11.56795 -11.27160 -11.09788 -10.77165 -9.40422 -9.33051 -8.90854 -6.57530 0.37081 0.49587 1.11727 1.25235 1.29455 1.36679 2.07980 2.45682 3.06855 3.71308 4.09765 4.34918 4.44967 4.63892 4.80730 5.01060 5.07027 5.22275 5.27874 5.44641 5.56484 5.73709 6.01773 6.24001 6.49081 6.69351 8.15392 Molecular weight = 257.98amu Principal moments of inertia in cm(-1) A = 0.019550 B = 0.015054 C = 0.009395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.857894 B = 1859.544149 C = 2979.724428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.156 4.156 3 C -0.107 4.107 4 C -0.034 4.034 5 F -0.154 7.154 6 C 0.056 3.944 7 C -0.480 4.480 8 H 0.076 0.924 9 C 0.063 3.937 10 N -0.839 5.839 11 Si 0.942 3.058 12 H -0.257 1.257 13 H -0.275 1.275 14 H -0.257 1.257 15 C -0.160 4.160 16 Br -0.065 7.065 17 C -0.064 4.064 18 H 0.073 0.927 19 H 0.076 0.924 20 H 0.072 0.928 21 H 0.143 0.857 22 H 0.292 0.708 23 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.091 -4.012 -1.134 11.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.158 4.158 3 C -0.126 4.126 4 C -0.055 4.055 5 F -0.133 7.133 6 C 0.052 3.948 7 C -0.510 4.510 8 H 0.094 0.906 9 C -0.153 4.153 10 N -0.466 5.466 11 Si 0.765 3.235 12 H -0.182 1.182 13 H -0.201 1.201 14 H -0.181 1.181 15 C -0.240 4.240 16 Br 0.020 6.980 17 C -0.084 4.084 18 H 0.091 0.909 19 H 0.095 0.905 20 H 0.091 0.909 21 H 0.161 0.839 22 H 0.103 0.897 23 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -10.433 -4.486 -1.158 11.416 hybrid contribution 0.540 0.967 -0.380 1.171 sum -9.893 -3.519 -1.538 10.613 Atomic orbital electron populations 1.20595 0.87858 1.03419 1.02666 1.19711 0.97563 0.90598 1.07924 1.21044 0.90867 1.00126 1.00588 1.18225 0.90862 0.80700 1.15671 1.91206 1.81380 1.45988 1.94732 1.17688 0.94073 0.90088 0.92992 1.19186 0.89978 1.19114 1.22677 0.90615 1.26536 0.95216 0.93248 1.00253 1.69711 1.11671 1.28756 1.36418 0.85956 0.79466 0.80500 0.77568 1.18195 1.20073 1.18118 1.21905 0.94425 0.90041 1.17658 1.96370 1.79085 1.24555 1.98000 1.20989 0.90995 0.99020 0.97405 0.90877 0.90499 0.90891 0.83945 0.89722 0.83798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.00 10.00 71.23 0.71 -1.29 14 2 C -0.16 -5.21 5.90 -19.70 -0.12 -5.32 14 3 C -0.11 -4.09 9.65 22.26 0.21 -3.87 14 4 C -0.03 -1.59 5.66 22.87 0.13 -1.46 14 5 F -0.15 -7.71 12.91 44.97 0.58 -7.13 14 6 C 0.06 2.83 4.68 -21.23 -0.10 2.73 14 7 C -0.48 -26.79 8.45 23.42 0.20 -26.59 14 8 H 0.08 4.53 7.70 -2.91 -0.02 4.51 14 9 C 0.06 3.49 4.98 85.25 0.42 3.91 14 10 N -0.84 -47.14 13.93 21.83 0.30 -46.84 14 11 Si 0.94 44.63 24.72 68.60 1.70 46.33 14 12 H -0.26 -12.01 6.29 99.48 0.63 -11.38 14 13 H -0.27 -12.15 7.11 99.48 0.71 -11.45 14 14 H -0.26 -12.25 7.11 99.48 0.71 -11.54 14 15 C -0.16 -7.01 6.28 22.77 0.14 -6.87 14 16 Br -0.07 -2.61 32.44 -20.37 -0.66 -3.27 14 17 C -0.06 -2.32 9.40 22.24 0.21 -2.11 14 18 H 0.07 1.47 8.14 -2.39 -0.02 1.45 14 19 H 0.08 1.47 8.08 -2.38 -0.02 1.45 14 20 H 0.07 1.44 8.08 -2.39 -0.02 1.42 14 21 H 0.14 4.53 8.06 -2.91 -0.02 4.50 14 22 H 0.29 14.89 8.30 -92.71 -0.77 14.13 14 23 H 0.14 4.25 8.06 -2.91 -0.02 4.23 14 Total: -1.00 -59.34 225.92 4.88 -54.46 By element: Atomic # 1 Polarization: -3.82 SS G_CDS: 1.14 Total: -2.67 kcal Atomic # 6 Polarization: -42.69 SS G_CDS: 1.82 Total: -40.88 kcal Atomic # 7 Polarization: -47.14 SS G_CDS: 0.30 Total: -46.84 kcal Atomic # 9 Polarization: -7.71 SS G_CDS: 0.58 Total: -7.13 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 1.70 Total: 46.33 kcal Atomic # 35 Polarization: -2.61 SS G_CDS: -0.66 Total: -3.27 kcal Total: -59.34 4.88 -54.46 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306746155.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.184 kcal (2) G-P(sol) polarization free energy of solvation -59.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds