Wall clock time and date at job start Mon Mar 30 2020 06:30:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.33719 * 125.93968 * 2 1 4 4 C 1.34257 * 110.95851 * 180.02562 * 3 2 1 5 5 Br 1.89101 * 125.28723 * 180.02562 * 4 3 2 6 6 C 1.34525 * 109.43111 * 359.97438 * 4 3 2 7 7 C 1.38286 * 125.94109 * 180.02562 * 2 1 3 8 8 C 1.47365 * 127.28143 * 0.02562 * 7 2 1 9 9 O 1.21905 * 119.99739 * 0.02562 * 8 7 2 10 10 C 1.41495 * 119.99826 * 180.02562 * 8 7 2 11 11 H 1.07993 * 119.99965 * 359.97438 * 10 8 7 12 12 C 1.40325 * 119.99414 * 180.02562 * 10 8 7 13 13 N 1.30536 * 120.00494 * 359.97438 * 12 10 8 14 14 Si 1.86801 * 119.99401 * 180.02562 * 12 10 8 15 15 H 1.48500 * 109.47402 * 59.99603 * 14 12 10 16 16 H 1.48507 * 109.46999 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47459 * 299.99522 * 14 12 10 18 18 H 1.08992 * 109.47293 * 359.97271 * 1 2 3 19 19 H 1.09002 * 109.46909 * 119.97772 * 1 2 3 20 20 H 1.08995 * 109.46657 * 239.96985 * 1 2 3 21 21 H 1.07992 * 126.97447 * 179.74024 * 6 4 3 22 22 H 0.96999 * 119.99733 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.2919 1.0826 0.0000 4 6 3.5888 0.7356 -0.0006 5 35 5.0431 1.9443 -0.0001 6 6 3.6932 -0.6056 -0.0004 7 6 2.3187 -1.1196 -0.0005 8 6 1.8934 -2.5305 -0.0017 9 8 0.7066 -2.8093 -0.0028 10 6 2.8624 -3.5615 -0.0015 11 1 3.9137 -3.3145 -0.0009 12 6 2.4572 -4.9050 -0.0031 13 7 1.1865 -5.2036 -0.0043 14 14 3.7366 -6.2662 -0.0022 15 1 4.5839 -6.1484 1.2116 16 1 3.0553 -7.5858 -0.0036 17 1 4.5875 -6.1467 -1.2133 18 1 -0.3633 1.0276 0.0005 19 1 -0.3633 -0.5135 -0.8902 20 1 -0.3632 -0.5143 0.8897 21 1 4.6037 -1.1862 -0.0046 22 1 0.9065 -6.1323 -0.0051 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306870917.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:57 Heat of formation + Delta-G solvation = -31.142488 kcal Electronic energy + Delta-G solvation = -11730.165744 eV Core-core repulsion = 9298.256725 eV Total energy + Delta-G solvation = -2431.909019 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 257.968 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.72366 -36.55154 -32.80360 -32.37156 -31.77493 -30.24393 -27.19256 -25.41299 -22.38738 -20.63011 -18.43518 -16.89630 -15.88396 -15.80864 -14.94144 -13.88205 -13.37211 -12.76718 -12.51727 -12.46169 -12.39320 -11.87579 -11.51011 -11.09238 -11.02050 -10.98140 -10.47473 -10.37938 -10.22151 -9.07028 -8.79764 -7.68151 -7.56132 -6.34423 -4.92774 1.22528 2.03942 2.72663 3.09690 3.11477 3.13671 3.82318 3.99674 4.44739 5.41696 5.55535 5.74588 5.88670 6.11549 6.17187 6.31693 6.44218 6.65819 7.13056 7.23146 7.56373 8.03568 8.76704 8.82181 10.28378 10.49981 Molecular weight = 257.97amu Principal moments of inertia in cm(-1) A = 0.030729 B = 0.006842 C = 0.005613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.970191 B = 4091.268255 C = 4987.095178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 C 0.020 3.980 3 O -0.175 6.175 4 C -0.062 4.062 5 Br 0.024 6.976 6 C -0.115 4.115 7 C -0.194 4.194 8 C 0.415 3.585 9 O -0.541 6.541 10 C -0.512 4.512 11 H 0.071 0.929 12 C 0.080 3.920 13 N -0.735 5.735 14 Si 0.907 3.093 15 H -0.264 1.264 16 H -0.278 1.278 17 H -0.264 1.264 18 H 0.061 0.939 19 H 0.091 0.909 20 H 0.091 0.909 21 H 0.159 0.841 22 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.403 10.610 0.004 12.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.032 4.032 3 O -0.073 6.073 4 C -0.188 4.188 5 Br 0.107 6.893 6 C -0.137 4.137 7 C -0.197 4.197 8 C 0.311 3.689 9 O -0.432 6.432 10 C -0.543 4.543 11 H 0.089 0.911 12 C -0.143 4.143 13 N -0.364 5.364 14 Si 0.731 3.269 15 H -0.189 1.189 16 H -0.202 1.202 17 H -0.189 1.189 18 H 0.080 0.920 19 H 0.110 0.890 20 H 0.110 0.890 21 H 0.177 0.823 22 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.114 11.135 0.003 12.703 hybrid contribution 0.749 -0.883 0.000 1.158 sum 6.863 10.253 0.003 12.338 Atomic orbital electron populations 1.20243 0.83874 1.01667 1.05151 1.23573 0.93727 0.82977 1.02902 1.83614 1.14869 1.36001 1.72864 1.23341 0.83117 0.93125 1.19182 1.96683 1.32574 1.61733 1.98295 1.22896 0.99130 0.90769 1.00954 1.23744 0.90306 0.98888 1.06761 1.17269 0.89531 0.82979 0.79108 1.90528 1.19011 1.83832 1.49823 1.20745 0.95044 0.91263 1.47280 0.91097 1.25986 0.95584 1.00050 0.92702 1.69946 1.15978 1.19731 1.30746 0.86421 0.81181 0.79403 0.79898 1.18893 1.20242 1.18890 0.92028 0.89040 0.89044 0.82334 0.91432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.96 9.21 36.01 0.33 -0.63 14 2 C 0.02 0.43 7.45 -34.29 -0.26 0.18 14 3 O -0.17 -3.49 10.52 7.37 0.08 -3.41 14 4 C -0.06 -1.16 7.75 29.42 0.23 -0.93 14 5 Br 0.02 0.34 34.08 -68.01 -2.32 -1.98 14 6 C -0.12 -2.38 10.48 -37.46 -0.39 -2.77 14 7 C -0.19 -4.65 6.32 -102.73 -0.65 -5.30 14 8 C 0.41 11.67 6.92 -34.63 -0.24 11.43 14 9 O -0.54 -16.57 14.33 5.00 0.07 -16.50 14 10 C -0.51 -14.07 9.04 -37.56 -0.34 -14.41 14 11 H 0.07 1.79 7.07 -52.49 -0.37 1.41 14 12 C 0.08 2.13 5.50 -17.32 -0.10 2.04 14 13 N -0.74 -20.81 11.72 55.57 0.65 -20.16 14 14 Si 0.91 19.14 29.56 -169.99 -5.03 14.11 14 15 H -0.26 -5.45 7.11 56.52 0.40 -5.05 14 16 H -0.28 -5.68 7.11 56.52 0.40 -5.27 14 17 H -0.26 -5.45 7.11 56.52 0.40 -5.04 14 18 H 0.06 0.89 8.14 -51.93 -0.42 0.47 14 19 H 0.09 1.71 8.12 -51.93 -0.42 1.29 14 20 H 0.09 1.71 8.12 -51.93 -0.42 1.29 14 21 H 0.16 2.98 7.61 -52.49 -0.40 2.58 14 22 H 0.27 6.98 8.29 -40.82 -0.34 6.64 14 LS Contribution 231.54 15.07 3.49 3.49 Total: -1.00 -30.89 231.54 -5.63 -36.52 By element: Atomic # 1 Polarization: -0.51 SS G_CDS: -1.17 Total: -1.68 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: -1.41 Total: -10.40 kcal Atomic # 7 Polarization: -20.81 SS G_CDS: 0.65 Total: -20.16 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: 0.15 Total: -19.91 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.03 Total: 14.11 kcal Atomic # 35 Polarization: 0.34 SS G_CDS: -2.32 Total: -1.98 kcal Total LS contribution 3.49 Total: 3.49 kcal Total: -30.89 -5.63 -36.52 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306870917.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.379 kcal (2) G-P(sol) polarization free energy of solvation -30.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds