Wall clock time and date at job start Mon Mar 30 2020 06:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.09005 * 110.33371 * 60.51568 * 9 7 2 11 11 C 1.54472 * 110.37138 * 182.88593 * 9 7 2 12 12 C 1.54509 * 104.06600 * 142.80799 * 11 9 7 13 13 C 1.54487 * 104.05742 * 0.02562 * 12 11 9 14 14 H 1.08999 * 110.37251 * 94.85655 * 13 12 11 15 15 C 1.50705 * 110.37008 * 217.18979 * 13 12 11 16 16 S 1.75878 * 125.20050 * 71.52478 * 15 13 12 17 17 C 1.75881 * 90.98149 * 179.97438 * 16 15 13 18 18 C 1.33401 * 109.60477 * 0.29491 * 17 16 15 19 19 C 1.33438 * 125.19989 * 251.83870 * 15 13 12 20 20 Cl 1.73606 * 122.55049 * 359.93489 * 19 15 13 21 21 O 1.44425 * 110.36797 * 298.26605 * 9 7 2 22 22 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 23 23 H 1.09008 * 110.51518 * 261.45519 * 11 9 7 24 24 H 1.09004 * 110.51511 * 24.16192 * 11 9 7 25 25 H 1.08996 * 110.51429 * 241.35886 * 12 11 9 26 26 H 1.09001 * 110.51157 * 118.64096 * 12 11 9 27 27 H 1.08005 * 125.19852 * 180.02562 * 17 16 15 28 28 H 1.08005 * 122.54432 * 179.79019 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.6297 -2.5739 -0.8979 11 6 2.2342 -3.6882 0.0694 12 6 1.5108 -4.7180 0.9658 13 6 0.1756 -4.0294 1.3261 14 1 -0.6099 -4.3410 0.6377 15 6 -0.2129 -4.3491 2.7467 16 16 0.5848 -3.7195 4.1821 17 6 -0.5195 -4.6088 5.2228 18 6 -1.3801 -5.3010 4.4746 19 6 -1.2110 -5.1578 3.1076 20 17 -2.2212 -5.9683 1.9516 21 8 0.4392 -2.6163 1.1834 22 1 -0.4850 0.8401 -0.0004 23 1 2.4089 -4.1024 -0.9237 24 1 3.1743 -3.3784 0.5257 25 1 2.0931 -4.9171 1.8654 26 1 1.3277 -5.6412 0.4159 27 1 -0.5008 -4.5996 6.3026 28 1 -2.1505 -5.9254 4.9024 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307449081.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:27 Heat of formation + Delta-G solvation = -22.560267 kcal Electronic energy + Delta-G solvation = -14922.382007 eV Core-core repulsion = 12283.858793 eV Total energy + Delta-G solvation = -2638.523214 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 258.022 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.63084 -37.44622 -35.75186 -32.74440 -31.02715 -30.50138 -27.49292 -24.83211 -23.20695 -21.20689 -20.09389 -19.22482 -17.23172 -16.54392 -15.70520 -15.07623 -14.43381 -14.11010 -13.70134 -13.47771 -13.20317 -12.78324 -12.33547 -12.09939 -11.65190 -11.25240 -10.98671 -10.90790 -10.80343 -10.58672 -10.50209 -10.39053 -10.07897 -9.75530 -9.18738 -8.65126 -8.44409 -8.14477 -8.11595 -6.03844 -4.17158 1.10482 1.59574 2.08142 2.67449 2.88348 3.29588 3.36602 3.39604 4.40106 4.74652 5.15078 5.24709 5.42252 5.52887 5.59859 5.74399 5.89433 6.10889 6.16853 6.29366 6.30633 6.51222 6.60038 6.72478 6.76441 7.44727 7.85826 8.15092 8.43037 8.92659 9.53524 11.03783 Molecular weight = 258.02amu Principal moments of inertia in cm(-1) A = 0.026943 B = 0.006647 C = 0.006219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.999401 B = 4211.356985 C = 4501.448025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.077 3.923 3 Si 0.893 3.107 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.531 4.531 8 H 0.065 0.935 9 C 0.205 3.795 10 H 0.028 0.972 11 C -0.146 4.146 12 C -0.144 4.144 13 C 0.125 3.875 14 H 0.076 0.924 15 C -0.139 4.139 16 S 0.189 5.811 17 C -0.235 4.235 18 C -0.128 4.128 19 C -0.066 4.066 20 Cl -0.059 7.059 21 O -0.339 6.339 22 H 0.262 0.738 23 H 0.057 0.943 24 H 0.066 0.934 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.168 0.832 28 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.071 -10.765 7.462 13.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.129 4.129 3 Si 0.720 3.280 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.568 4.568 8 H 0.083 0.917 9 C 0.150 3.850 10 H 0.046 0.954 11 C -0.184 4.184 12 C -0.182 4.182 13 C 0.064 3.936 14 H 0.094 0.906 15 C -0.258 4.258 16 S 0.453 5.547 17 C -0.371 4.371 18 C -0.159 4.159 19 C -0.105 4.105 20 Cl -0.031 7.031 21 O -0.258 6.258 22 H 0.072 0.928 23 H 0.076 0.924 24 H 0.085 0.915 25 H 0.082 0.918 26 H 0.084 0.916 27 H 0.185 0.815 28 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -0.178 -9.571 7.775 12.332 hybrid contribution -0.944 -0.320 -0.371 1.063 sum -1.122 -9.891 7.404 12.406 Atomic orbital electron populations 1.70041 1.06046 1.26716 1.46876 1.25092 0.94787 0.99368 0.93639 0.86603 0.80010 0.83276 0.78146 1.20500 1.21043 1.19678 1.21009 0.92659 0.89604 1.53575 0.91663 1.20574 0.86842 0.92731 0.84891 0.95410 1.23063 1.00679 0.96552 0.98090 1.22986 0.96238 0.98812 1.00196 1.21262 0.96565 0.88192 0.87573 0.90640 1.24597 0.99547 1.01056 1.00612 1.84689 1.31329 1.45128 0.93539 1.25631 1.02733 1.04961 1.03757 1.19750 1.02076 1.03132 0.90911 1.19616 0.97097 1.03058 0.90701 1.98327 1.67733 1.78041 1.59015 1.89593 1.72298 1.15928 1.48016 0.92821 0.92374 0.91474 0.91753 0.91649 0.81497 0.83932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.59 12.94 55.43 0.72 -24.88 15 2 C 0.08 2.18 5.42 -17.82 -0.10 2.09 15 3 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 15 4 H -0.28 -6.51 7.11 56.52 0.40 -6.10 15 5 H -0.28 -6.77 7.11 56.52 0.40 -6.36 15 6 H -0.27 -6.36 7.11 56.52 0.40 -5.96 15 7 C -0.53 -14.79 8.78 -34.44 -0.30 -15.09 15 8 H 0.07 1.75 7.59 -52.49 -0.40 1.36 15 9 C 0.20 5.26 3.11 -27.11 -0.08 5.18 15 10 H 0.03 0.77 8.14 -51.93 -0.42 0.35 15 11 C -0.15 -3.01 6.61 -25.17 -0.17 -3.18 15 12 C -0.14 -2.64 6.62 -25.16 -0.17 -2.81 15 13 C 0.12 2.58 3.59 -27.10 -0.10 2.48 15 14 H 0.08 1.57 7.13 -51.93 -0.37 1.20 15 15 C -0.14 -2.56 5.38 -35.98 -0.19 -2.76 15 16 S 0.19 3.10 23.23 -107.50 -2.50 0.61 15 17 C -0.23 -3.08 11.23 29.04 0.33 -2.76 15 18 C -0.13 -1.77 10.07 -41.18 -0.41 -2.18 15 19 C -0.07 -1.08 6.27 -41.17 -0.26 -1.34 15 20 Cl -0.06 -0.91 27.96 -51.86 -1.45 -2.36 15 21 O -0.34 -8.78 10.47 -35.23 -0.37 -9.15 15 22 H 0.26 7.36 8.31 -40.82 -0.34 7.02 15 23 H 0.06 1.08 8.14 -51.92 -0.42 0.66 15 24 H 0.07 1.38 7.73 -51.93 -0.40 0.98 15 25 H 0.06 1.11 7.87 -51.93 -0.41 0.70 15 26 H 0.06 1.05 8.14 -51.93 -0.42 0.62 15 27 H 0.17 1.63 8.06 -52.48 -0.42 1.21 15 28 H 0.14 1.60 8.06 -52.48 -0.42 1.18 15 LS Contribution 271.70 15.07 4.09 4.09 Total: -1.00 -30.14 271.70 -8.81 -38.95 By element: Atomic # 1 Polarization: -0.33 SS G_CDS: -2.83 Total: -3.16 kcal Atomic # 6 Polarization: -18.91 SS G_CDS: -1.45 Total: -20.36 kcal Atomic # 7 Polarization: -25.59 SS G_CDS: 0.72 Total: -24.88 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: -0.37 Total: -9.15 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: 3.10 SS G_CDS: -2.50 Total: 0.61 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -1.45 Total: -2.36 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -30.14 -8.81 -38.95 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307449081.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.389 kcal (2) G-P(sol) polarization free energy of solvation -30.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds