Wall clock time and date at job start Mon Mar 30 2020 06:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.09005 * 110.33371 * 60.51568 * 9 7 2 11 11 C 1.54472 * 110.37138 * 182.88593 * 9 7 2 12 12 C 1.54509 * 104.06600 * 142.80799 * 11 9 7 13 13 C 1.54487 * 104.05742 * 0.02562 * 12 11 9 14 14 H 1.08999 * 110.37251 * 94.85655 * 13 12 11 15 15 C 1.50705 * 110.37008 * 217.18979 * 13 12 11 16 16 S 1.75878 * 125.20050 * 71.52478 * 15 13 12 17 17 C 1.75881 * 90.98149 * 179.97438 * 16 15 13 18 18 C 1.33401 * 109.60477 * 0.29491 * 17 16 15 19 19 C 1.33438 * 125.19989 * 251.83870 * 15 13 12 20 20 Cl 1.73606 * 122.55049 * 359.93489 * 19 15 13 21 21 O 1.44425 * 110.36797 * 298.26605 * 9 7 2 22 22 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 23 23 H 1.09008 * 110.51518 * 261.45519 * 11 9 7 24 24 H 1.09004 * 110.51511 * 24.16192 * 11 9 7 25 25 H 1.08996 * 110.51429 * 241.35886 * 12 11 9 26 26 H 1.09001 * 110.51157 * 118.64096 * 12 11 9 27 27 H 1.08005 * 125.19852 * 180.02562 * 17 16 15 28 28 H 1.08005 * 122.54432 * 179.79019 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.6297 -2.5739 -0.8979 11 6 2.2342 -3.6882 0.0694 12 6 1.5108 -4.7180 0.9658 13 6 0.1756 -4.0294 1.3261 14 1 -0.6099 -4.3410 0.6377 15 6 -0.2129 -4.3491 2.7467 16 16 0.5848 -3.7195 4.1821 17 6 -0.5195 -4.6088 5.2228 18 6 -1.3801 -5.3010 4.4746 19 6 -1.2110 -5.1578 3.1076 20 17 -2.2212 -5.9683 1.9516 21 8 0.4392 -2.6163 1.1834 22 1 -0.4850 0.8401 -0.0004 23 1 2.4089 -4.1024 -0.9237 24 1 3.1743 -3.3784 0.5257 25 1 2.0931 -4.9171 1.8654 26 1 1.3277 -5.6412 0.4159 27 1 -0.5008 -4.5996 6.3026 28 1 -2.1505 -5.9254 4.9024 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307449081.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:26 Heat of formation + Delta-G solvation = -40.295551 kcal Electronic energy + Delta-G solvation = -14923.151066 eV Core-core repulsion = 12283.858793 eV Total energy + Delta-G solvation = -2639.292274 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 258.022 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.21610 -38.83863 -36.97668 -34.79562 -32.72718 -32.07912 -29.16425 -26.52124 -24.65089 -22.87538 -21.78179 -20.48033 -18.91185 -18.20873 -17.14258 -16.80044 -16.27037 -15.80232 -15.27101 -14.80125 -14.36285 -14.31933 -14.05112 -13.73367 -13.29606 -12.83334 -12.57096 -12.42938 -12.28226 -12.23159 -12.06016 -11.93894 -11.70238 -11.41343 -11.09363 -10.73515 -10.17309 -9.63061 -9.36481 -8.16803 -6.37597 -0.12109 0.33469 0.93724 1.40861 1.42393 1.51533 1.53319 1.62140 2.40296 3.03115 3.46319 3.80620 3.93443 4.12726 4.21219 4.36892 4.55217 4.57710 4.73593 4.87841 4.94921 5.03780 5.09213 5.16322 5.26172 5.48700 5.72160 6.11992 6.46864 6.86535 7.37977 8.91689 Molecular weight = 258.02amu Principal moments of inertia in cm(-1) A = 0.026943 B = 0.006647 C = 0.006219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.999401 B = 4211.356985 C = 4501.448025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.023 3.977 3 Si 0.963 3.037 4 H -0.269 1.269 5 H -0.284 1.284 6 H -0.263 1.263 7 C -0.551 4.551 8 H 0.069 0.931 9 C 0.196 3.804 10 H -0.006 1.006 11 C -0.137 4.137 12 C -0.132 4.132 13 C 0.121 3.879 14 H 0.065 0.935 15 C -0.181 4.181 16 S 0.154 5.846 17 C -0.199 4.199 18 C -0.138 4.138 19 C -0.057 4.057 20 Cl -0.055 7.055 21 O -0.372 6.372 22 H 0.262 0.738 23 H 0.076 0.924 24 H 0.066 0.934 25 H 0.076 0.924 26 H 0.091 0.909 27 H 0.209 0.791 28 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.641 -11.709 9.074 14.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.179 4.179 3 Si 0.787 3.213 4 H -0.194 1.194 5 H -0.210 1.210 6 H -0.187 1.187 7 C -0.588 4.588 8 H 0.087 0.913 9 C 0.140 3.860 10 H 0.012 0.988 11 C -0.175 4.175 12 C -0.170 4.170 13 C 0.061 3.939 14 H 0.083 0.917 15 C -0.300 4.300 16 S 0.418 5.582 17 C -0.335 4.335 18 C -0.167 4.167 19 C -0.097 4.097 20 Cl -0.026 7.026 21 O -0.292 6.292 22 H 0.071 0.929 23 H 0.095 0.905 24 H 0.085 0.915 25 H 0.094 0.906 26 H 0.110 0.890 27 H 0.226 0.774 28 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 0.263 -10.534 9.381 14.108 hybrid contribution -1.164 -0.123 -0.828 1.434 sum -0.901 -10.657 8.553 13.694 Atomic orbital electron populations 1.70188 1.07803 1.27522 1.48483 1.25978 0.95586 1.03195 0.93172 0.85507 0.78750 0.78495 0.78589 1.19414 1.20962 1.18695 1.21443 0.93133 0.91017 1.53193 0.91285 1.20471 0.87390 0.94189 0.83915 0.98831 1.22934 0.99447 0.95328 0.99803 1.22933 0.94809 0.98831 1.00463 1.21305 0.97389 0.85767 0.89413 0.91747 1.24378 1.01889 1.03759 0.99937 1.84743 1.32926 1.46492 0.94074 1.26070 1.00169 1.02121 1.05139 1.20059 1.03166 1.03905 0.89601 1.19974 0.95900 1.01787 0.92051 1.98330 1.67384 1.77730 1.59188 1.89493 1.72616 1.19591 1.47489 0.92920 0.90507 0.91523 0.90553 0.89024 0.77412 0.80725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -55.40 12.94 21.45 0.28 -55.12 15 2 C 0.02 1.31 5.42 84.66 0.46 1.77 15 3 Si 0.96 44.22 29.54 68.60 2.03 46.24 15 4 H -0.27 -11.81 7.11 99.48 0.71 -11.11 15 5 H -0.28 -12.90 7.11 99.48 0.71 -12.19 15 6 H -0.26 -11.55 7.11 99.48 0.71 -10.85 15 7 C -0.55 -31.33 8.78 25.60 0.22 -31.11 15 8 H 0.07 3.75 7.59 -2.91 -0.02 3.72 15 9 C 0.20 10.40 3.11 30.35 0.09 10.49 15 10 H -0.01 -0.35 8.14 -2.38 -0.02 -0.36 15 11 C -0.14 -5.65 6.61 31.61 0.21 -5.45 15 12 C -0.13 -4.75 6.62 31.61 0.21 -4.54 15 13 C 0.12 5.08 3.59 30.35 0.11 5.18 15 14 H 0.06 2.76 7.13 -2.39 -0.02 2.74 15 15 C -0.18 -6.58 5.38 24.60 0.13 -6.44 15 16 S 0.15 4.89 23.23 -56.49 -1.31 3.58 15 17 C -0.20 -4.54 11.23 66.72 0.75 -3.79 15 18 C -0.14 -3.36 10.07 21.23 0.21 -3.14 15 19 C -0.06 -1.78 6.27 21.24 0.13 -1.65 15 20 Cl -0.05 -1.61 27.96 -2.72 -0.08 -1.68 15 21 O -0.37 -19.91 10.47 -148.98 -1.56 -21.47 15 22 H 0.26 15.16 8.31 -92.70 -0.77 14.39 15 23 H 0.08 2.81 8.14 -2.38 -0.02 2.79 15 24 H 0.07 2.72 7.73 -2.39 -0.02 2.70 15 25 H 0.08 2.55 7.87 -2.39 -0.02 2.53 15 26 H 0.09 2.77 8.14 -2.39 -0.02 2.75 15 27 H 0.21 2.97 8.06 -2.91 -0.02 2.95 15 28 H 0.18 3.15 8.06 -2.91 -0.02 3.13 15 Total: -1.00 -66.99 271.70 3.06 -63.93 By element: Atomic # 1 Polarization: 2.03 SS G_CDS: 1.17 Total: 3.19 kcal Atomic # 6 Polarization: -41.21 SS G_CDS: 2.53 Total: -38.67 kcal Atomic # 7 Polarization: -55.40 SS G_CDS: 0.28 Total: -55.12 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: -1.56 Total: -21.47 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.24 kcal Atomic # 16 Polarization: 4.89 SS G_CDS: -1.31 Total: 3.58 kcal Atomic # 17 Polarization: -1.61 SS G_CDS: -0.08 Total: -1.68 kcal Total: -66.99 3.06 -63.93 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307449081.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.636 kcal (2) G-P(sol) polarization free energy of solvation -66.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds