Wall clock time and date at job start Mon Mar 30 2020 06:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48493 * 109.47326 * 90.00391 * 3 2 1 5 5 H 1.48506 * 109.46545 * 210.00141 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99852 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 180.02562 * 7 2 1 10 10 H 1.09004 * 109.81735 * 300.56186 * 9 7 2 11 11 C 1.54388 * 109.82757 * 179.58706 * 9 7 2 12 12 C 1.55297 * 102.25043 * 219.12675 * 11 9 7 13 13 C 1.54947 * 100.94388 * 34.13310 * 12 11 9 14 14 H 1.08996 * 110.31098 * 82.47234 * 13 12 11 15 15 C 1.50710 * 110.39307 * 204.59944 * 13 12 11 16 16 S 1.75880 * 125.20021 * 72.24076 * 15 13 12 17 17 C 1.75886 * 90.97833 * 179.97438 * 16 15 13 18 18 C 1.33403 * 109.60688 * 359.97438 * 17 16 15 19 19 C 1.33441 * 125.19663 * 251.93618 * 15 13 12 20 20 Cl 1.73597 * 122.55221 * 0.02562 * 19 15 13 21 21 O 1.43229 * 109.83350 * 61.44903 * 9 7 2 22 22 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 23 23 H 1.09000 * 110.84574 * 337.31867 * 11 9 7 24 24 H 1.08997 * 110.84575 * 100.93591 * 11 9 7 25 25 H 1.09005 * 111.12856 * 276.21467 * 12 11 9 26 26 H 1.08996 * 111.16707 * 152.06866 * 12 11 9 27 27 H 1.07997 * 125.19470 * 179.97438 * 17 16 15 28 28 H 1.08001 * 122.54029 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5467 1.4400 -0.7001 6 1 1.4466 2.6526 -0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 1 3.8814 -0.6721 -0.8825 11 6 4.0351 -2.6465 0.0097 12 6 5.2540 -2.5509 0.9673 13 6 4.7554 -1.4822 1.9723 14 1 4.1206 -1.9420 2.7296 15 6 5.9240 -0.7870 2.6224 16 16 6.9844 0.3703 1.8290 17 6 7.9227 0.5671 3.3036 18 6 7.4148 -0.2070 4.2640 19 6 6.3087 -0.9511 3.8896 20 17 5.4875 -2.0195 4.9841 21 8 3.9970 -0.5510 1.1842 22 1 -0.4850 0.8401 0.0004 23 1 3.2824 -3.3276 0.4067 24 1 4.3489 -2.9524 -0.9883 25 1 6.1433 -2.2081 0.4383 26 1 5.4388 -3.5026 1.4654 27 1 8.7792 1.2155 3.4145 28 1 7.8330 -0.2481 5.2590 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307449082.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:28 Heat of formation + Delta-G solvation = -38.013610 kcal Electronic energy + Delta-G solvation = -15041.320325 eV Core-core repulsion = 12402.127003 eV Total energy + Delta-G solvation = -2639.193322 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 258.022 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.43747 -38.93820 -37.00278 -34.82763 -32.97600 -32.35054 -29.48153 -26.52856 -24.61716 -22.67322 -22.02467 -20.56473 -19.06435 -18.45155 -17.56770 -16.88287 -16.39151 -15.83454 -15.07788 -14.73489 -14.53623 -14.38516 -14.20811 -14.01340 -13.42231 -12.90256 -12.60328 -12.53603 -12.43228 -12.30306 -12.07715 -11.77317 -11.72684 -11.56556 -11.43008 -10.87013 -10.21906 -9.64679 -9.40249 -8.36757 -6.48682 -0.17327 0.28756 0.87811 1.32363 1.40882 1.46264 1.51593 1.58649 2.35567 2.83985 3.33841 3.65686 3.74596 4.13041 4.16991 4.31024 4.44402 4.51930 4.63354 4.85292 4.88019 4.99334 5.05028 5.11539 5.20587 5.46218 5.53816 6.12536 6.40623 6.67240 7.28304 8.77802 Molecular weight = 258.02amu Principal moments of inertia in cm(-1) A = 0.023737 B = 0.007898 C = 0.007278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.322105 B = 3544.136452 C = 3846.098237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.031 3.969 3 Si 0.954 3.046 4 H -0.282 1.282 5 H -0.247 1.247 6 H -0.290 1.290 7 C -0.536 4.536 8 H 0.044 0.956 9 C 0.163 3.837 10 H 0.045 0.955 11 C -0.129 4.129 12 C -0.131 4.131 13 C 0.138 3.862 14 H 0.071 0.929 15 C -0.190 4.190 16 S 0.150 5.850 17 C -0.194 4.194 18 C -0.138 4.138 19 C -0.055 4.055 20 Cl -0.055 7.055 21 O -0.403 6.403 22 H 0.268 0.732 23 H 0.063 0.937 24 H 0.092 0.908 25 H 0.087 0.913 26 H 0.100 0.900 27 H 0.209 0.791 28 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.638 -0.907 6.884 20.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.169 4.169 3 Si 0.780 3.220 4 H -0.208 1.208 5 H -0.171 1.171 6 H -0.217 1.217 7 C -0.574 4.574 8 H 0.062 0.938 9 C 0.108 3.892 10 H 0.062 0.938 11 C -0.167 4.167 12 C -0.168 4.168 13 C 0.079 3.921 14 H 0.089 0.911 15 C -0.309 4.309 16 S 0.413 5.587 17 C -0.329 4.329 18 C -0.168 4.168 19 C -0.095 4.095 20 Cl -0.026 7.026 21 O -0.325 6.325 22 H 0.076 0.924 23 H 0.082 0.918 24 H 0.110 0.890 25 H 0.105 0.895 26 H 0.118 0.882 27 H 0.226 0.774 28 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 19.481 -0.075 5.569 20.261 hybrid contribution -0.747 -0.204 1.530 1.715 sum 18.734 -0.279 7.099 20.036 Atomic orbital electron populations 1.70056 1.08152 1.28289 1.51408 1.25831 0.95282 1.03196 0.92566 0.85556 0.79276 0.78620 0.78537 1.20793 1.17084 1.21728 1.21664 0.91329 0.93343 1.51040 0.93811 1.20773 0.92191 0.91706 0.84542 0.93767 1.22972 0.96520 0.96476 1.00719 1.23243 0.98244 0.99242 0.96117 1.21247 0.87937 0.88893 0.93974 0.91093 1.24579 1.03218 1.05570 0.97494 1.84580 1.21282 1.38810 1.13979 1.26039 1.05833 1.05746 0.95293 1.20076 0.95791 0.98029 1.02858 1.19999 0.98955 1.00329 0.90190 1.98347 1.78250 1.63644 1.62395 1.88434 1.70134 1.37631 1.36261 0.92354 0.91820 0.88982 0.89471 0.88180 0.77386 0.80842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.87 13.96 21.45 0.30 -59.57 15 2 C 0.03 1.86 5.47 84.66 0.46 2.33 15 3 Si 0.95 48.56 26.28 68.60 1.80 50.36 15 4 H -0.28 -14.62 7.11 99.48 0.71 -13.91 15 5 H -0.25 -11.77 6.53 99.48 0.65 -11.12 15 6 H -0.29 -14.23 7.11 99.48 0.71 -13.53 15 7 C -0.54 -31.28 9.33 25.60 0.24 -31.04 15 8 H 0.04 2.76 7.77 -2.91 -0.02 2.74 15 9 C 0.16 7.77 2.82 30.32 0.09 7.85 15 10 H 0.04 2.11 7.17 -2.38 -0.02 2.09 15 11 C -0.13 -4.84 6.53 31.85 0.21 -4.63 15 12 C -0.13 -4.10 6.56 32.05 0.21 -3.88 15 13 C 0.14 5.22 3.74 30.52 0.11 5.33 15 14 H 0.07 2.84 7.12 -2.39 -0.02 2.82 15 15 C -0.19 -6.12 5.50 24.60 0.14 -5.98 15 16 S 0.15 4.06 23.22 -56.49 -1.31 2.75 15 17 C -0.19 -3.75 11.23 66.72 0.75 -3.00 15 18 C -0.14 -2.97 10.07 21.23 0.21 -2.76 15 19 C -0.05 -1.54 6.27 21.24 0.13 -1.41 15 20 Cl -0.05 -1.51 27.95 -2.72 -0.08 -1.59 15 21 O -0.40 -18.92 8.45 -148.98 -1.26 -20.18 15 22 H 0.27 15.97 8.31 -92.70 -0.77 15.20 15 23 H 0.06 2.51 7.66 -2.39 -0.02 2.50 15 24 H 0.09 2.97 8.14 -2.39 -0.02 2.95 15 25 H 0.09 2.45 8.05 -2.38 -0.02 2.43 15 26 H 0.10 2.64 8.14 -2.39 -0.02 2.62 15 27 H 0.21 2.34 8.06 -2.91 -0.02 2.31 15 28 H 0.17 2.74 8.06 -2.91 -0.02 2.72 15 Total: -1.00 -68.73 266.58 3.12 -65.61 By element: Atomic # 1 Polarization: -1.30 SS G_CDS: 1.11 Total: -0.18 kcal Atomic # 6 Polarization: -39.75 SS G_CDS: 2.55 Total: -37.20 kcal Atomic # 7 Polarization: -59.87 SS G_CDS: 0.30 Total: -59.57 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: -1.26 Total: -20.18 kcal Atomic # 14 Polarization: 48.56 SS G_CDS: 1.80 Total: 50.36 kcal Atomic # 16 Polarization: 4.06 SS G_CDS: -1.31 Total: 2.75 kcal Atomic # 17 Polarization: -1.51 SS G_CDS: -0.08 Total: -1.59 kcal Total: -68.73 3.12 -65.61 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307449082.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.595 kcal (2) G-P(sol) polarization free energy of solvation -68.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds