Wall clock time and date at job start Mon Mar 30 2020 06:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48501 * 109.47088 * 270.27618 * 3 2 1 5 5 H 1.48495 * 109.47293 * 30.27820 * 3 2 1 6 6 H 1.48507 * 109.47015 * 150.27778 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.07999 * 119.99964 * 179.72485 * 7 2 1 9 9 C 1.50700 * 120.00047 * 359.72305 * 7 2 1 10 10 H 1.09002 * 110.32858 * 302.25409 * 9 7 2 11 11 C 1.54474 * 110.37167 * 180.02562 * 9 7 2 12 12 C 1.54515 * 104.06125 * 217.18826 * 11 9 7 13 13 C 1.54478 * 104.06252 * 359.97438 * 12 11 9 14 14 H 1.09003 * 110.37649 * 265.14742 * 13 12 11 15 15 C 1.50702 * 110.36995 * 142.91909 * 13 12 11 16 16 S 1.75872 * 125.20341 * 285.02382 * 15 13 12 17 17 C 1.75872 * 90.98445 * 179.97438 * 16 15 13 18 18 C 1.33402 * 109.60588 * 0.02562 * 17 16 15 19 19 C 1.33444 * 125.19870 * 104.72294 * 15 13 12 20 20 Cl 1.73600 * 122.54794 * 0.02562 * 19 15 13 21 21 O 1.44425 * 104.80417 * 23.97932 * 13 12 11 22 22 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 23 23 H 1.08993 * 110.51097 * 335.83282 * 11 9 7 24 24 H 1.09005 * 110.50847 * 98.41210 * 11 9 7 25 25 H 1.09001 * 110.50869 * 118.64473 * 12 11 9 26 26 H 1.09003 * 110.50856 * 241.35861 * 12 11 9 27 27 H 1.07998 * 125.19937 * 179.97438 * 17 16 15 28 28 H 1.08011 * 122.54439 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4909 2.0497 -1.4001 5 1 1.4497 2.6509 0.7059 6 1 3.5497 1.4383 0.6942 7 6 2.0046 -1.1941 -0.0058 8 1 3.0845 -1.1941 -0.0103 9 6 1.2510 -2.4992 -0.0058 10 1 0.5929 -2.5565 0.8612 11 6 2.2362 -3.6890 -0.0122 12 6 1.5526 -4.7377 -0.9179 13 6 0.2349 -4.0576 -1.3510 14 1 -0.5804 -4.3552 -0.6915 15 6 -0.0922 -4.4095 -2.7794 16 16 0.7114 -3.7465 -4.1964 17 6 -0.3082 -4.7058 -5.2609 18 6 -1.1549 -5.4351 -4.5324 19 6 -1.0320 -5.2760 -3.1623 20 17 -2.0286 -6.1342 -2.0291 21 8 0.4917 -2.6419 -1.2258 22 1 -0.4849 0.8401 0.0041 23 1 3.1956 -3.3882 -0.4331 24 1 2.3686 -4.0806 0.9964 25 1 2.1740 -4.9553 -1.7866 26 1 1.3451 -5.6492 -0.3574 27 1 -0.2573 -4.7040 -6.3397 28 1 -1.8778 -6.1030 -4.9772 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307449083.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:30 Heat of formation + Delta-G solvation = -23.130336 kcal Electronic energy + Delta-G solvation = -14910.974043 eV Core-core repulsion = 12272.426109 eV Total energy + Delta-G solvation = -2638.547934 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 258.022 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.63845 -37.45182 -35.75824 -32.75661 -31.03962 -30.50551 -27.49344 -24.83698 -23.21288 -21.20854 -20.11546 -19.20583 -17.24681 -16.55054 -15.70060 -15.10057 -14.44077 -14.09569 -13.71047 -13.49286 -13.20886 -12.77261 -12.34026 -12.11159 -11.65804 -11.25892 -10.98327 -10.91910 -10.81721 -10.58132 -10.50606 -10.40005 -10.08831 -9.74986 -9.19036 -8.65316 -8.44999 -8.15382 -8.12181 -6.05333 -4.18591 1.10291 1.59269 2.08257 2.66974 2.87940 3.29773 3.36246 3.38505 4.39304 4.72913 5.14093 5.24678 5.42530 5.52678 5.59649 5.74498 5.89078 6.10713 6.16643 6.29428 6.30263 6.51003 6.60191 6.72493 6.76886 7.44318 7.84959 8.14800 8.43447 8.91636 9.52365 11.02466 Molecular weight = 258.02amu Principal moments of inertia in cm(-1) A = 0.027342 B = 0.006606 C = 0.006140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.830944 B = 4237.672542 C = 4559.086817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.077 3.923 3 Si 0.893 3.107 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.529 4.529 8 H 0.065 0.935 9 C 0.205 3.795 10 H 0.030 0.970 11 C -0.146 4.146 12 C -0.143 4.143 13 C 0.126 3.874 14 H 0.076 0.924 15 C -0.140 4.140 16 S 0.191 5.809 17 C -0.236 4.236 18 C -0.128 4.128 19 C -0.067 4.067 20 Cl -0.060 7.060 21 O -0.343 6.343 22 H 0.262 0.738 23 H 0.066 0.934 24 H 0.058 0.942 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.167 0.833 28 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.736 -10.870 -7.429 13.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.129 4.129 3 Si 0.720 3.280 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.567 4.567 8 H 0.083 0.917 9 C 0.149 3.851 10 H 0.048 0.952 11 C -0.184 4.184 12 C -0.182 4.182 13 C 0.065 3.935 14 H 0.093 0.907 15 C -0.259 4.259 16 S 0.455 5.545 17 C -0.372 4.372 18 C -0.159 4.159 19 C -0.105 4.105 20 Cl -0.031 7.031 21 O -0.262 6.262 22 H 0.072 0.928 23 H 0.085 0.915 24 H 0.077 0.923 25 H 0.082 0.918 26 H 0.084 0.916 27 H 0.185 0.815 28 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 0.116 -9.617 -7.717 12.331 hybrid contribution -0.898 -0.396 0.324 1.034 sum -0.783 -10.013 -7.392 12.471 Atomic orbital electron populations 1.70034 1.06075 1.26782 1.46950 1.25101 0.94796 0.99418 0.93589 0.86593 0.79920 0.83176 0.78310 1.20389 1.21075 1.19687 1.21022 0.92669 0.89603 1.53366 0.91691 1.20579 0.87617 0.92632 0.84230 0.95193 1.23059 1.00861 0.96439 0.98032 1.22969 0.96422 0.98793 0.99973 1.21239 0.96926 0.88008 0.87334 0.90661 1.24611 1.00151 1.00448 1.00683 1.84721 1.34893 1.41338 0.93498 1.25641 1.03467 1.04267 1.03807 1.19748 1.02129 1.02966 0.91023 1.19607 0.98256 1.01840 0.90839 1.98327 1.68501 1.75731 1.60581 1.89566 1.75053 1.15952 1.45653 0.92785 0.91522 0.92340 0.91758 0.91641 0.81505 0.83941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.59 13.06 55.43 0.72 -24.87 15 2 C 0.08 2.17 5.43 -17.82 -0.10 2.08 15 3 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 15 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 15 6 H -0.27 -6.29 7.11 56.52 0.40 -5.89 15 7 C -0.53 -14.73 8.78 -34.44 -0.30 -15.03 15 8 H 0.06 1.75 7.57 -52.49 -0.40 1.35 15 9 C 0.20 5.25 3.06 -27.11 -0.08 5.17 15 10 H 0.03 0.83 8.14 -51.93 -0.42 0.41 15 11 C -0.15 -3.02 6.62 -25.16 -0.17 -3.18 15 12 C -0.14 -2.63 6.62 -25.16 -0.17 -2.79 15 13 C 0.13 2.59 3.55 -27.11 -0.10 2.50 15 14 H 0.08 1.56 7.20 -51.93 -0.37 1.19 15 15 C -0.14 -2.57 5.41 -35.98 -0.19 -2.76 15 16 S 0.19 3.15 23.18 -107.50 -2.49 0.65 15 17 C -0.24 -3.09 11.23 29.04 0.33 -2.76 15 18 C -0.13 -1.76 10.07 -41.19 -0.41 -2.17 15 19 C -0.07 -1.09 6.27 -41.17 -0.26 -1.34 15 20 Cl -0.06 -0.91 27.99 -51.86 -1.45 -2.36 15 21 O -0.34 -8.85 10.59 -35.23 -0.37 -9.22 15 22 H 0.26 7.35 8.31 -40.82 -0.34 7.01 15 23 H 0.07 1.37 7.71 -51.93 -0.40 0.97 15 24 H 0.06 1.09 8.14 -51.93 -0.42 0.67 15 25 H 0.06 1.11 7.87 -51.93 -0.41 0.70 15 26 H 0.06 1.05 8.14 -51.93 -0.42 0.63 15 27 H 0.17 1.63 8.06 -52.49 -0.42 1.20 15 28 H 0.14 1.60 8.06 -52.48 -0.42 1.17 15 LS Contribution 271.90 15.07 4.10 4.10 Total: -1.00 -30.06 271.90 -8.80 -38.85 By element: Atomic # 1 Polarization: -0.25 SS G_CDS: -2.83 Total: -3.08 kcal Atomic # 6 Polarization: -18.85 SS G_CDS: -1.45 Total: -20.30 kcal Atomic # 7 Polarization: -25.59 SS G_CDS: 0.72 Total: -24.87 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: -0.37 Total: -9.22 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: 3.15 SS G_CDS: -2.49 Total: 0.65 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -1.45 Total: -2.36 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -30.06 -8.80 -38.85 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307449083.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.722 kcal (2) G-P(sol) polarization free energy of solvation -30.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds