Wall clock time and date at job start Mon Mar 30 2020 06:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48501 * 109.47088 * 270.27618 * 3 2 1 5 5 H 1.48495 * 109.47293 * 30.27820 * 3 2 1 6 6 H 1.48507 * 109.47015 * 150.27778 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.07999 * 119.99964 * 179.72485 * 7 2 1 9 9 C 1.50700 * 120.00047 * 359.72305 * 7 2 1 10 10 H 1.09002 * 110.32858 * 302.25409 * 9 7 2 11 11 C 1.54474 * 110.37167 * 180.02562 * 9 7 2 12 12 C 1.54515 * 104.06125 * 217.18826 * 11 9 7 13 13 C 1.54478 * 104.06252 * 359.97438 * 12 11 9 14 14 H 1.09003 * 110.37649 * 265.14742 * 13 12 11 15 15 C 1.50702 * 110.36995 * 142.91909 * 13 12 11 16 16 S 1.75872 * 125.20341 * 285.02382 * 15 13 12 17 17 C 1.75872 * 90.98445 * 179.97438 * 16 15 13 18 18 C 1.33402 * 109.60588 * 0.02562 * 17 16 15 19 19 C 1.33444 * 125.19870 * 104.72294 * 15 13 12 20 20 Cl 1.73600 * 122.54794 * 0.02562 * 19 15 13 21 21 O 1.44425 * 104.80417 * 23.97932 * 13 12 11 22 22 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 23 23 H 1.08993 * 110.51097 * 335.83282 * 11 9 7 24 24 H 1.09005 * 110.50847 * 98.41210 * 11 9 7 25 25 H 1.09001 * 110.50869 * 118.64473 * 12 11 9 26 26 H 1.09003 * 110.50856 * 241.35861 * 12 11 9 27 27 H 1.07998 * 125.19937 * 179.97438 * 17 16 15 28 28 H 1.08011 * 122.54439 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4909 2.0497 -1.4001 5 1 1.4497 2.6509 0.7059 6 1 3.5497 1.4383 0.6942 7 6 2.0046 -1.1941 -0.0058 8 1 3.0845 -1.1941 -0.0103 9 6 1.2510 -2.4992 -0.0058 10 1 0.5929 -2.5565 0.8612 11 6 2.2362 -3.6890 -0.0122 12 6 1.5526 -4.7377 -0.9179 13 6 0.2349 -4.0576 -1.3510 14 1 -0.5804 -4.3552 -0.6915 15 6 -0.0922 -4.4095 -2.7794 16 16 0.7114 -3.7465 -4.1964 17 6 -0.3082 -4.7058 -5.2609 18 6 -1.1549 -5.4351 -4.5324 19 6 -1.0320 -5.2760 -3.1623 20 17 -2.0286 -6.1342 -2.0291 21 8 0.4917 -2.6419 -1.2258 22 1 -0.4849 0.8401 0.0041 23 1 3.1956 -3.3882 -0.4331 24 1 2.3686 -4.0806 0.9964 25 1 2.1740 -4.9553 -1.7866 26 1 1.3451 -5.6492 -0.3574 27 1 -0.2573 -4.7040 -6.3397 28 1 -1.8778 -6.1030 -4.9772 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307449083.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:30 Heat of formation + Delta-G solvation = -40.806895 kcal Electronic energy + Delta-G solvation = -14911.740557 eV Core-core repulsion = 12272.426109 eV Total energy + Delta-G solvation = -2639.314447 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 258.022 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.22374 -38.84148 -36.97686 -34.80709 -32.73734 -32.08355 -29.16409 -26.52388 -24.65556 -22.87629 -21.79831 -20.46328 -18.92794 -18.21342 -17.13861 -16.82606 -16.26751 -15.79606 -15.27660 -14.81368 -14.35458 -14.32127 -14.05472 -13.73213 -13.30854 -12.84617 -12.57785 -12.42080 -12.28765 -12.24507 -12.05019 -11.94090 -11.69503 -11.41110 -11.09556 -10.74345 -10.18957 -9.62634 -9.36899 -8.18044 -6.38808 -0.11974 0.33323 0.94039 1.40844 1.42384 1.51476 1.53073 1.62154 2.39857 3.00984 3.45898 3.81311 3.93303 4.12582 4.21046 4.36859 4.54921 4.57473 4.73578 4.87745 4.95087 5.03769 5.09129 5.16538 5.25992 5.48001 5.71584 6.11589 6.47786 6.85256 7.36995 8.90686 Molecular weight = 258.02amu Principal moments of inertia in cm(-1) A = 0.027342 B = 0.006606 C = 0.006140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.830944 B = 4237.672542 C = 4559.086817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.023 3.977 3 Si 0.963 3.037 4 H -0.275 1.275 5 H -0.281 1.281 6 H -0.259 1.259 7 C -0.549 4.549 8 H 0.069 0.931 9 C 0.196 3.804 10 H -0.004 1.004 11 C -0.137 4.137 12 C -0.131 4.131 13 C 0.122 3.878 14 H 0.064 0.936 15 C -0.181 4.181 16 S 0.154 5.846 17 C -0.200 4.200 18 C -0.137 4.137 19 C -0.057 4.057 20 Cl -0.054 7.054 21 O -0.375 6.375 22 H 0.263 0.737 23 H 0.066 0.934 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.091 0.909 27 H 0.209 0.791 28 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.251 -11.879 -9.018 14.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.179 4.179 3 Si 0.787 3.213 4 H -0.201 1.201 5 H -0.206 1.206 6 H -0.183 1.183 7 C -0.586 4.586 8 H 0.087 0.913 9 C 0.141 3.859 10 H 0.013 0.987 11 C -0.175 4.175 12 C -0.169 4.169 13 C 0.062 3.938 14 H 0.082 0.918 15 C -0.300 4.300 16 S 0.417 5.583 17 C -0.336 4.336 18 C -0.167 4.167 19 C -0.097 4.097 20 Cl -0.026 7.026 21 O -0.295 6.295 22 H 0.071 0.929 23 H 0.085 0.915 24 H 0.095 0.905 25 H 0.094 0.906 26 H 0.109 0.891 27 H 0.226 0.774 28 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 0.612 -10.647 -9.301 14.150 hybrid contribution -1.135 -0.184 0.769 1.383 sum -0.523 -10.831 -8.532 13.797 Atomic orbital electron populations 1.70179 1.07830 1.27609 1.48552 1.25989 0.95595 1.03244 0.93118 0.85501 0.78933 0.78477 0.78410 1.20050 1.20623 1.18317 1.21452 0.93137 0.91010 1.53015 0.91319 1.20468 0.88044 0.94112 0.83324 0.98671 1.22932 0.99591 0.95236 0.99774 1.22915 0.95144 0.98741 1.00149 1.21278 0.97634 0.85577 0.89272 0.91792 1.24380 1.02683 1.03000 0.99934 1.84787 1.36392 1.42877 0.94206 1.26072 1.00918 1.01446 1.05120 1.20060 1.03095 1.03808 0.89734 1.19957 0.96960 1.00604 0.92179 1.98330 1.68140 1.75381 1.60729 1.89465 1.75374 1.19593 1.45089 0.92857 0.91530 0.90529 0.90560 0.89055 0.77439 0.80708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -55.42 13.06 21.45 0.28 -55.14 15 2 C 0.02 1.30 5.43 84.66 0.46 1.76 15 3 Si 0.96 44.17 29.54 68.60 2.03 46.19 15 4 H -0.27 -12.38 7.11 99.48 0.71 -11.67 15 5 H -0.28 -12.57 7.11 99.48 0.71 -11.86 15 6 H -0.26 -11.23 7.11 99.48 0.71 -10.52 15 7 C -0.55 -31.23 8.78 25.60 0.22 -31.00 15 8 H 0.07 3.73 7.57 -2.91 -0.02 3.71 15 9 C 0.20 10.40 3.06 30.35 0.09 10.49 15 10 H 0.00 -0.26 8.14 -2.39 -0.02 -0.27 15 11 C -0.14 -5.67 6.62 31.61 0.21 -5.46 15 12 C -0.13 -4.72 6.62 31.61 0.21 -4.51 15 13 C 0.12 5.11 3.55 30.35 0.11 5.22 15 14 H 0.06 2.74 7.20 -2.39 -0.02 2.72 15 15 C -0.18 -6.57 5.41 24.60 0.13 -6.43 15 16 S 0.15 4.90 23.18 -56.49 -1.31 3.59 15 17 C -0.20 -4.54 11.23 66.72 0.75 -3.79 15 18 C -0.14 -3.32 10.07 21.23 0.21 -3.11 15 19 C -0.06 -1.76 6.27 21.24 0.13 -1.63 15 20 Cl -0.05 -1.57 27.99 -2.72 -0.08 -1.65 15 21 O -0.38 -20.03 10.59 -148.98 -1.58 -21.61 15 22 H 0.26 15.16 8.31 -92.71 -0.77 14.39 15 23 H 0.07 2.71 7.71 -2.39 -0.02 2.69 15 24 H 0.08 2.81 8.14 -2.38 -0.02 2.79 15 25 H 0.08 2.55 7.87 -2.39 -0.02 2.53 15 26 H 0.09 2.77 8.14 -2.39 -0.02 2.75 15 27 H 0.21 2.97 8.06 -2.91 -0.02 2.94 15 28 H 0.18 3.12 8.06 -2.90 -0.02 3.10 15 Total: -1.00 -66.83 271.90 3.04 -63.78 By element: Atomic # 1 Polarization: 2.12 SS G_CDS: 1.17 Total: 3.29 kcal Atomic # 6 Polarization: -40.99 SS G_CDS: 2.53 Total: -38.46 kcal Atomic # 7 Polarization: -55.42 SS G_CDS: 0.28 Total: -55.14 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: -1.58 Total: -21.61 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.19 kcal Atomic # 16 Polarization: 4.90 SS G_CDS: -1.31 Total: 3.59 kcal Atomic # 17 Polarization: -1.57 SS G_CDS: -0.08 Total: -1.65 kcal Total: -66.83 3.04 -63.78 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307449083.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.975 kcal (2) G-P(sol) polarization free energy of solvation -66.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds