Wall clock time and date at job start Mon Mar 30 2020 06:49:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31518 * 1
3 3 Si 1.86795 * 120.00139 * 2 1
4 4 H 1.48501 * 109.47088 * 270.27618 * 3 2 1
5 5 H 1.48495 * 109.47293 * 30.27820 * 3 2 1
6 6 H 1.48507 * 109.47015 * 150.27778 * 3 2 1
7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3
8 8 H 1.07999 * 119.99964 * 179.72485 * 7 2 1
9 9 C 1.50700 * 120.00047 * 359.72305 * 7 2 1
10 10 H 1.09002 * 110.32858 * 302.25409 * 9 7 2
11 11 C 1.54474 * 110.37167 * 180.02562 * 9 7 2
12 12 C 1.54515 * 104.06125 * 217.18826 * 11 9 7
13 13 C 1.54478 * 104.06252 * 359.97438 * 12 11 9
14 14 H 1.09003 * 110.37649 * 265.14742 * 13 12 11
15 15 C 1.50702 * 110.36995 * 142.91909 * 13 12 11
16 16 S 1.75872 * 125.20341 * 285.02382 * 15 13 12
17 17 C 1.75872 * 90.98445 * 179.97438 * 16 15 13
18 18 C 1.33402 * 109.60588 * 0.02562 * 17 16 15
19 19 C 1.33444 * 125.19870 * 104.72294 * 15 13 12
20 20 Cl 1.73600 * 122.54794 * 0.02562 * 19 15 13
21 21 O 1.44425 * 104.80417 * 23.97932 * 13 12 11
22 22 H 0.97000 * 119.99468 * 359.71811 * 1 2 3
23 23 H 1.08993 * 110.51097 * 335.83282 * 11 9 7
24 24 H 1.09005 * 110.50847 * 98.41210 * 11 9 7
25 25 H 1.09001 * 110.50869 * 118.64473 * 12 11 9
26 26 H 1.09003 * 110.50856 * 241.35861 * 12 11 9
27 27 H 1.07998 * 125.19937 * 179.97438 * 17 16 15
28 28 H 1.08011 * 122.54439 * 180.02562 * 18 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 2.4909 2.0497 -1.4001
5 1 1.4497 2.6509 0.7059
6 1 3.5497 1.4383 0.6942
7 6 2.0046 -1.1941 -0.0058
8 1 3.0845 -1.1941 -0.0103
9 6 1.2510 -2.4992 -0.0058
10 1 0.5929 -2.5565 0.8612
11 6 2.2362 -3.6890 -0.0122
12 6 1.5526 -4.7377 -0.9179
13 6 0.2349 -4.0576 -1.3510
14 1 -0.5804 -4.3552 -0.6915
15 6 -0.0922 -4.4095 -2.7794
16 16 0.7114 -3.7465 -4.1964
17 6 -0.3082 -4.7058 -5.2609
18 6 -1.1549 -5.4351 -4.5324
19 6 -1.0320 -5.2760 -3.1623
20 17 -2.0286 -6.1342 -2.0291
21 8 0.4917 -2.6419 -1.2258
22 1 -0.4849 0.8401 0.0041
23 1 3.1956 -3.3882 -0.4331
24 1 2.3686 -4.0806 0.9964
25 1 2.1740 -4.9553 -1.7866
26 1 1.3451 -5.6492 -0.3574
27 1 -0.2573 -4.7040 -6.3397
28 1 -1.8778 -6.1030 -4.9772
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000307449083.mol2 28
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:49:30
Heat of formation + Delta-G solvation = -40.806895 kcal
Electronic energy + Delta-G solvation = -14911.740557 eV
Core-core repulsion = 12272.426109 eV
Total energy + Delta-G solvation = -2639.314447 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 258.022 amu
Computer time = 0.23 seconds
Orbital eigenvalues (eV)
-40.22374 -38.84148 -36.97686 -34.80709 -32.73734 -32.08355 -29.16409 -26.52388
-24.65556 -22.87629 -21.79831 -20.46328 -18.92794 -18.21342 -17.13861 -16.82606
-16.26751 -15.79606 -15.27660 -14.81368 -14.35458 -14.32127 -14.05472 -13.73213
-13.30854 -12.84617 -12.57785 -12.42080 -12.28765 -12.24507 -12.05019 -11.94090
-11.69503 -11.41110 -11.09556 -10.74345 -10.18957 -9.62634 -9.36899 -8.18044
-6.38808 -0.11974 0.33323 0.94039 1.40844 1.42384 1.51476 1.53073
1.62154 2.39857 3.00984 3.45898 3.81311 3.93303 4.12582 4.21046
4.36859 4.54921 4.57473 4.73578 4.87745 4.95087 5.03769 5.09129
5.16538 5.25992 5.48001 5.71584 6.11589 6.47786 6.85256 7.36995
8.90686
Molecular weight = 258.02amu
Principal moments of inertia in cm(-1)
A = 0.027342 B = 0.006606 C = 0.006140
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1023.830944 B = 4237.672542 C = 4559.086817
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.904 5.904
2 C 0.023 3.977
3 Si 0.963 3.037
4 H -0.275 1.275
5 H -0.281 1.281
6 H -0.259 1.259
7 C -0.549 4.549
8 H 0.069 0.931
9 C 0.196 3.804
10 H -0.004 1.004
11 C -0.137 4.137
12 C -0.131 4.131
13 C 0.122 3.878
14 H 0.064 0.936
15 C -0.181 4.181
16 S 0.154 5.846
17 C -0.200 4.200
18 C -0.137 4.137
19 C -0.057 4.057
20 Cl -0.054 7.054
21 O -0.375 6.375
22 H 0.263 0.737
23 H 0.066 0.934
24 H 0.076 0.924
25 H 0.076 0.924
26 H 0.091 0.909
27 H 0.209 0.791
28 H 0.176 0.824
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.251 -11.879 -9.018 14.917
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.542 5.542
2 C -0.179 4.179
3 Si 0.787 3.213
4 H -0.201 1.201
5 H -0.206 1.206
6 H -0.183 1.183
7 C -0.586 4.586
8 H 0.087 0.913
9 C 0.141 3.859
10 H 0.013 0.987
11 C -0.175 4.175
12 C -0.169 4.169
13 C 0.062 3.938
14 H 0.082 0.918
15 C -0.300 4.300
16 S 0.417 5.583
17 C -0.336 4.336
18 C -0.167 4.167
19 C -0.097 4.097
20 Cl -0.026 7.026
21 O -0.295 6.295
22 H 0.071 0.929
23 H 0.085 0.915
24 H 0.095 0.905
25 H 0.094 0.906
26 H 0.109 0.891
27 H 0.226 0.774
28 H 0.193 0.807
Dipole moment (debyes) X Y Z Total
from point charges 0.612 -10.647 -9.301 14.150
hybrid contribution -1.135 -0.184 0.769 1.383
sum -0.523 -10.831 -8.532 13.797
Atomic orbital electron populations
1.70179 1.07830 1.27609 1.48552 1.25989 0.95595 1.03244 0.93118
0.85501 0.78933 0.78477 0.78410 1.20050 1.20623 1.18317 1.21452
0.93137 0.91010 1.53015 0.91319 1.20468 0.88044 0.94112 0.83324
0.98671 1.22932 0.99591 0.95236 0.99774 1.22915 0.95144 0.98741
1.00149 1.21278 0.97634 0.85577 0.89272 0.91792 1.24380 1.02683
1.03000 0.99934 1.84787 1.36392 1.42877 0.94206 1.26072 1.00918
1.01446 1.05120 1.20060 1.03095 1.03808 0.89734 1.19957 0.96960
1.00604 0.92179 1.98330 1.68140 1.75381 1.60729 1.89465 1.75374
1.19593 1.45089 0.92857 0.91530 0.90529 0.90560 0.89055 0.77439
0.80708
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -55.42 13.06 21.45 0.28 -55.14 15
2 C 0.02 1.30 5.43 84.66 0.46 1.76 15
3 Si 0.96 44.17 29.54 68.60 2.03 46.19 15
4 H -0.27 -12.38 7.11 99.48 0.71 -11.67 15
5 H -0.28 -12.57 7.11 99.48 0.71 -11.86 15
6 H -0.26 -11.23 7.11 99.48 0.71 -10.52 15
7 C -0.55 -31.23 8.78 25.60 0.22 -31.00 15
8 H 0.07 3.73 7.57 -2.91 -0.02 3.71 15
9 C 0.20 10.40 3.06 30.35 0.09 10.49 15
10 H 0.00 -0.26 8.14 -2.39 -0.02 -0.27 15
11 C -0.14 -5.67 6.62 31.61 0.21 -5.46 15
12 C -0.13 -4.72 6.62 31.61 0.21 -4.51 15
13 C 0.12 5.11 3.55 30.35 0.11 5.22 15
14 H 0.06 2.74 7.20 -2.39 -0.02 2.72 15
15 C -0.18 -6.57 5.41 24.60 0.13 -6.43 15
16 S 0.15 4.90 23.18 -56.49 -1.31 3.59 15
17 C -0.20 -4.54 11.23 66.72 0.75 -3.79 15
18 C -0.14 -3.32 10.07 21.23 0.21 -3.11 15
19 C -0.06 -1.76 6.27 21.24 0.13 -1.63 15
20 Cl -0.05 -1.57 27.99 -2.72 -0.08 -1.65 15
21 O -0.38 -20.03 10.59 -148.98 -1.58 -21.61 15
22 H 0.26 15.16 8.31 -92.71 -0.77 14.39 15
23 H 0.07 2.71 7.71 -2.39 -0.02 2.69 15
24 H 0.08 2.81 8.14 -2.38 -0.02 2.79 15
25 H 0.08 2.55 7.87 -2.39 -0.02 2.53 15
26 H 0.09 2.77 8.14 -2.39 -0.02 2.75 15
27 H 0.21 2.97 8.06 -2.91 -0.02 2.94 15
28 H 0.18 3.12 8.06 -2.90 -0.02 3.10 15
Total: -1.00 -66.83 271.90 3.04 -63.78
By element:
Atomic # 1 Polarization: 2.12 SS G_CDS: 1.17 Total: 3.29 kcal
Atomic # 6 Polarization: -40.99 SS G_CDS: 2.53 Total: -38.46 kcal
Atomic # 7 Polarization: -55.42 SS G_CDS: 0.28 Total: -55.14 kcal
Atomic # 8 Polarization: -20.03 SS G_CDS: -1.58 Total: -21.61 kcal
Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.19 kcal
Atomic # 16 Polarization: 4.90 SS G_CDS: -1.31 Total: 3.59 kcal
Atomic # 17 Polarization: -1.57 SS G_CDS: -0.08 Total: -1.65 kcal
Total: -66.83 3.04 -63.78 kcal
The number of atoms in the molecule is 28
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000307449083.mol2 28
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 22.975 kcal
(2) G-P(sol) polarization free energy of solvation -66.827 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.852 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.045 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.782 kcal
(6) G-S(sol) free energy of system = (1) + (5) -40.807 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.23 seconds