Wall clock time and date at job start Mon Mar 30 2020 06:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86801 * 119.99747 * 2 1 4 4 H 1.48495 * 109.46970 * 239.99495 * 3 2 1 5 5 H 1.48492 * 109.47239 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46781 * 120.00165 * 3 2 1 7 7 C 1.37873 * 119.99732 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99482 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00566 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.89748 * 59.47404 * 9 7 2 11 11 C 1.54377 * 109.83610 * 180.41294 * 9 7 2 12 12 C 1.55300 * 102.25502 * 140.86829 * 11 9 7 13 13 C 1.54940 * 100.94415 * 325.86750 * 12 11 9 14 14 H 1.08997 * 110.31031 * 277.52940 * 13 12 11 15 15 C 1.50699 * 110.31016 * 155.35699 * 13 12 11 16 16 S 1.75880 * 125.20368 * 287.52976 * 15 13 12 17 17 C 1.75880 * 90.98434 * 179.97438 * 16 15 13 18 18 C 1.33414 * 109.60336 * 0.34311 * 17 16 15 19 19 C 1.33441 * 125.20033 * 107.83621 * 15 13 12 20 20 Cl 1.73607 * 122.54881 * 0.02562 * 19 15 13 21 21 O 1.43245 * 109.83060 * 298.54585 * 9 7 2 22 22 H 0.96997 * 119.99892 * 359.97438 * 1 2 3 23 23 H 1.09006 * 110.84785 * 259.06560 * 11 9 7 24 24 H 1.09004 * 110.84470 * 22.47281 * 11 9 7 25 25 H 1.09007 * 111.12449 * 83.79023 * 12 11 9 26 26 H 1.09003 * 111.12579 * 207.90506 * 12 11 9 27 27 H 1.07994 * 125.20087 * 180.10170 * 17 16 15 28 28 H 1.07994 * 122.53946 * 179.71321 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6152 -2.5603 -0.8826 11 6 2.2469 -3.6788 0.0116 12 6 1.5536 -4.6864 0.9687 13 6 0.8763 -3.7200 1.9728 14 1 1.5912 -3.3999 2.7307 15 6 -0.3109 -4.3856 2.6197 16 16 -1.8436 -4.7203 1.8246 17 6 -2.4839 -5.4412 3.2956 18 6 -1.5620 -5.3876 4.2584 19 6 -0.3620 -4.8059 3.8852 20 17 0.9732 -4.6338 4.9812 21 8 0.4501 -2.5978 1.1839 22 1 -0.4850 0.8400 0.0004 23 1 2.3560 -4.1037 -0.9862 24 1 3.2138 -3.3665 0.4063 25 1 0.8126 -5.2852 0.4390 26 1 2.2854 -5.3222 1.4670 27 1 -3.4737 -5.8594 3.4041 28 1 -1.7381 -5.7693 5.2532 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307449084.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:32 Heat of formation + Delta-G solvation = -39.834310 kcal Electronic energy + Delta-G solvation = -14942.519673 eV Core-core repulsion = 12303.247400 eV Total energy + Delta-G solvation = -2639.272273 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 258.022 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.22458 -38.83579 -36.95956 -34.75328 -32.74282 -32.07876 -29.12659 -26.53203 -24.65578 -22.54813 -22.07487 -20.49811 -18.68452 -18.33282 -17.43496 -16.70405 -16.28037 -15.82997 -15.03442 -14.75506 -14.35996 -14.29848 -13.88865 -13.67195 -13.38109 -12.79063 -12.55553 -12.42556 -12.35465 -12.28405 -12.08107 -11.97181 -11.69822 -11.54446 -11.12828 -10.67800 -9.99999 -9.56169 -9.35283 -8.12283 -6.33953 -0.10712 0.35114 0.94383 1.39957 1.42403 1.49930 1.52717 1.63840 2.41083 3.05111 3.47143 3.75737 3.83799 4.16916 4.22953 4.37577 4.57251 4.63237 4.70312 4.89747 4.90824 5.06938 5.09586 5.16775 5.26788 5.59939 5.74719 6.18235 6.56156 6.99231 7.42823 8.94335 Molecular weight = 258.02amu Principal moments of inertia in cm(-1) A = 0.025524 B = 0.006698 C = 0.006394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.727790 B = 4179.064072 C = 4378.099357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.026 3.974 3 Si 0.956 3.044 4 H -0.264 1.264 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.565 4.565 8 H 0.062 0.938 9 C 0.198 3.802 10 H 0.007 0.993 11 C -0.136 4.136 12 C -0.133 4.133 13 C 0.132 3.868 14 H 0.067 0.933 15 C -0.184 4.184 16 S 0.150 5.850 17 C -0.200 4.200 18 C -0.137 4.137 19 C -0.059 4.059 20 Cl -0.055 7.055 21 O -0.380 6.380 22 H 0.261 0.739 23 H 0.082 0.918 24 H 0.069 0.931 25 H 0.077 0.923 26 H 0.098 0.902 27 H 0.208 0.792 28 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.581 -12.910 7.000 14.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.177 4.177 3 Si 0.781 3.219 4 H -0.188 1.188 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.603 4.603 8 H 0.081 0.919 9 C 0.142 3.858 10 H 0.025 0.975 11 C -0.174 4.174 12 C -0.170 4.170 13 C 0.072 3.928 14 H 0.085 0.915 15 C -0.303 4.303 16 S 0.414 5.586 17 C -0.335 4.335 18 C -0.167 4.167 19 C -0.098 4.098 20 Cl -0.027 7.027 21 O -0.300 6.300 22 H 0.070 0.930 23 H 0.100 0.900 24 H 0.088 0.912 25 H 0.096 0.904 26 H 0.116 0.884 27 H 0.225 0.775 28 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -3.380 -12.412 5.683 14.064 hybrid contribution 1.165 0.888 1.358 1.997 sum -2.215 -11.524 7.042 13.686 Atomic orbital electron populations 1.70170 1.07624 1.27360 1.48637 1.25909 0.95547 1.02894 0.93320 0.85662 0.78474 0.78698 0.79065 1.18831 1.20914 1.19708 1.21786 0.93111 0.92182 1.53199 0.91941 1.20232 0.88162 0.93482 0.83894 0.97490 1.23106 0.99236 0.94978 1.00052 1.23228 1.00112 0.97298 0.96406 1.21240 0.90230 0.87166 0.94137 0.91545 1.24644 1.01285 1.06812 0.97560 1.84705 1.04668 1.55123 1.14110 1.26044 1.05261 1.06652 0.95569 1.20062 0.90625 1.03306 1.02731 1.19962 0.92508 1.07219 0.90157 1.98330 1.45474 1.96643 1.62230 1.88764 1.59100 1.46333 1.35790 0.93047 0.89965 0.91210 0.90426 0.88374 0.77482 0.80807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -55.29 12.91 21.45 0.28 -55.02 15 2 C 0.03 1.47 5.41 84.65 0.46 1.93 15 3 Si 0.96 44.68 29.54 68.60 2.03 46.71 15 4 H -0.26 -11.68 7.11 99.48 0.71 -10.97 15 5 H -0.28 -13.01 7.11 99.48 0.71 -12.30 15 6 H -0.27 -12.43 7.11 99.48 0.71 -11.72 15 7 C -0.57 -32.22 8.75 25.60 0.22 -32.00 15 8 H 0.06 3.41 7.52 -2.91 -0.02 3.39 15 9 C 0.20 10.39 3.36 30.31 0.10 10.49 15 10 H 0.01 0.42 8.14 -2.39 -0.02 0.40 15 11 C -0.14 -5.49 6.53 31.85 0.21 -5.28 15 12 C -0.13 -4.66 6.56 32.05 0.21 -4.45 15 13 C 0.13 5.50 3.74 30.51 0.11 5.61 15 14 H 0.07 2.86 7.13 -2.39 -0.02 2.85 15 15 C -0.18 -6.65 5.49 24.60 0.14 -6.52 15 16 S 0.15 4.75 23.22 -56.49 -1.31 3.43 15 17 C -0.20 -4.55 11.23 66.73 0.75 -3.80 15 18 C -0.14 -3.36 10.07 21.23 0.21 -3.14 15 19 C -0.06 -1.82 6.27 21.24 0.13 -1.69 15 20 Cl -0.06 -1.62 27.96 -2.72 -0.08 -1.70 15 21 O -0.38 -20.18 10.08 -148.98 -1.50 -21.69 15 22 H 0.26 15.17 8.31 -92.71 -0.77 14.40 15 23 H 0.08 2.94 8.14 -2.38 -0.02 2.92 15 24 H 0.07 2.77 7.65 -2.39 -0.02 2.76 15 25 H 0.08 2.57 8.05 -2.38 -0.02 2.55 15 26 H 0.10 2.88 8.14 -2.39 -0.02 2.86 15 27 H 0.21 2.98 8.06 -2.91 -0.02 2.96 15 28 H 0.17 3.15 8.06 -2.91 -0.02 3.13 15 Total: -1.00 -67.02 271.63 3.13 -63.89 By element: Atomic # 1 Polarization: 2.04 SS G_CDS: 1.17 Total: 3.21 kcal Atomic # 6 Polarization: -41.39 SS G_CDS: 2.55 Total: -38.84 kcal Atomic # 7 Polarization: -55.29 SS G_CDS: 0.28 Total: -55.02 kcal Atomic # 8 Polarization: -20.18 SS G_CDS: -1.50 Total: -21.69 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Atomic # 16 Polarization: 4.75 SS G_CDS: -1.31 Total: 3.43 kcal Atomic # 17 Polarization: -1.62 SS G_CDS: -0.08 Total: -1.70 kcal Total: -67.02 3.13 -63.89 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307449084.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.060 kcal (2) G-P(sol) polarization free energy of solvation -67.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds