Wall clock time and date at job start Mon Mar 30 2020 06:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81402 * 103.00039 * 2 1 4 4 H 1.09006 * 108.82434 * 56.49762 * 3 2 1 5 5 C 1.54164 * 108.77453 * 298.04022 * 3 2 1 6 6 C 1.53827 * 111.96986 * 197.73658 * 5 3 2 7 7 C 1.50815 * 111.62069 * 319.04062 * 6 5 3 8 8 N 1.47632 * 108.05079 * 95.05832 * 7 6 5 9 9 C 1.46901 * 111.00152 * 150.34613 * 8 7 6 10 10 C 1.52995 * 109.47376 * 204.67667 * 9 8 7 11 11 C 1.52998 * 109.47414 * 174.83842 * 10 9 8 12 12 C 1.50700 * 109.47387 * 180.02562 * 11 10 9 13 13 H 1.07999 * 120.00227 * 0.02562 * 12 11 10 14 14 C 1.37877 * 119.99864 * 179.97438 * 12 11 10 15 15 N 1.31511 * 119.99754 * 179.97438 * 14 12 11 16 16 Si 1.86801 * 120.00288 * 0.02562 * 14 12 11 17 17 H 1.48501 * 109.47227 * 89.99511 * 16 14 12 18 18 H 1.48495 * 109.47137 * 209.99507 * 16 14 12 19 19 H 1.48501 * 109.46814 * 329.99551 * 16 14 12 20 20 C 1.39788 * 114.75444 * 277.19492 * 8 7 6 21 21 C 1.50748 * 108.85590 * 175.00215 * 3 2 1 22 22 H 1.09001 * 109.47369 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47367 * 299.99572 * 1 2 3 24 24 H 1.09003 * 109.47680 * 59.99745 * 1 2 3 25 25 H 1.08997 * 108.98472 * 318.37624 * 5 3 2 26 26 H 1.09003 * 108.98821 * 77.17881 * 5 3 2 27 27 H 1.08998 * 109.04527 * 79.59381 * 6 5 3 28 28 H 1.08993 * 109.04837 * 198.48815 * 6 5 3 29 29 H 1.08994 * 109.74792 * 335.41984 * 7 6 5 30 30 H 1.09000 * 109.74569 * 214.69156 * 7 6 5 31 31 H 1.09002 * 109.47148 * 84.68075 * 9 8 7 32 32 H 1.08989 * 109.47191 * 324.68450 * 9 8 7 33 33 H 1.09007 * 109.46895 * 54.84240 * 10 9 8 34 34 H 1.08994 * 109.47470 * 294.84164 * 10 9 8 35 35 H 1.09007 * 109.46765 * 60.00318 * 11 10 9 36 36 H 1.09002 * 109.47381 * 300.00459 * 11 10 9 37 37 H 0.97001 * 120.00554 * 180.02562 * 15 14 12 38 38 H 1.09008 * 109.01556 * 182.86353 * 20 8 7 39 39 H 1.08991 * 109.02402 * 301.76059 * 20 8 7 40 40 H 1.08990 * 109.54902 * 93.85632 * 21 3 2 41 41 H 1.09009 * 109.54139 * 333.58665 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7463 2.2384 0.8603 5 6 1.6651 2.4053 -1.2883 6 6 2.3206 3.7644 -1.5875 7 6 2.5000 4.5829 -0.3336 8 7 3.8689 4.3545 0.1699 9 6 4.3699 5.5347 0.8869 10 6 5.8995 5.5399 0.8545 11 6 6.4187 6.8323 1.4878 12 6 7.9253 6.8377 1.4553 13 1 8.4592 6.0030 1.0256 14 6 8.6222 7.9087 1.9733 15 7 9.9370 7.9132 1.9454 16 14 7.6988 9.3527 2.7161 17 1 7.4838 9.1102 4.1653 18 1 8.4930 10.5943 2.5345 19 1 6.3856 9.5016 2.0389 20 6 4.0242 3.1977 0.9392 21 6 3.7164 1.9225 0.1243 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 1.8481 1.7316 -2.1253 26 1 0.5902 2.5484 -1.1772 27 1 3.2955 3.5960 -2.0450 28 1 1.6919 4.3165 -2.2859 29 1 1.7745 4.2702 0.4173 30 1 2.3630 5.6401 -0.5612 31 1 4.0286 5.5032 1.9216 32 1 3.9932 6.4381 0.4075 33 1 6.2412 5.4789 -0.1788 34 1 6.2777 4.6840 1.4134 35 1 6.0770 6.8933 2.5211 36 1 6.0405 7.6883 0.9289 37 1 10.4274 8.6664 2.3102 38 1 5.0507 3.1480 1.3025 39 1 3.3475 3.2449 1.7923 40 1 4.1579 2.0087 -0.8685 41 1 4.1318 1.0540 0.6355 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308783281.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:46 Heat of formation + Delta-G solvation = -33.738786 kcal Electronic energy + Delta-G solvation = -17421.963557 eV Core-core repulsion = 14847.464386 eV Total energy + Delta-G solvation = -2574.499170 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.51642 -36.73389 -35.15630 -33.28492 -33.17285 -29.97628 -29.12703 -26.68797 -26.28146 -24.00963 -22.03934 -21.51377 -20.54474 -18.90228 -17.78202 -16.75855 -16.55408 -16.17596 -16.04735 -15.78174 -15.28407 -15.03003 -14.72927 -14.36768 -14.14264 -14.00600 -13.73927 -13.47636 -13.26086 -13.01277 -12.75587 -12.56239 -12.21793 -12.01484 -11.94194 -11.77771 -11.65412 -11.42012 -11.37725 -11.31250 -11.12594 -10.75062 -10.70600 -9.10936 -8.69079 -8.28157 -6.32487 0.74246 1.36612 1.38985 1.51276 1.64068 2.37635 2.95749 3.07140 3.63892 3.70615 3.98804 4.04231 4.19682 4.23512 4.32207 4.33247 4.38120 4.41106 4.56185 4.62312 4.70084 4.71965 4.74740 4.82318 4.86247 4.93720 4.99394 5.02219 5.12634 5.17314 5.18722 5.32599 5.46919 5.57110 5.63704 5.68772 6.21695 6.32933 6.54790 6.76266 7.32047 8.89125 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.045583 B = 0.003584 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.122955 B = 7809.759074 C = 8051.360980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 S -0.320 6.320 3 C -0.032 4.032 4 H 0.080 0.920 5 C -0.106 4.106 6 C -0.110 4.110 7 C 0.063 3.937 8 N -0.563 5.563 9 C 0.070 3.930 10 C -0.087 4.087 11 C -0.009 4.009 12 C -0.533 4.533 13 H 0.027 0.973 14 C 0.000 4.000 15 N -0.955 5.955 16 Si 0.956 3.044 17 H -0.267 1.267 18 H -0.284 1.284 19 H -0.243 1.243 20 C 0.083 3.917 21 C -0.092 4.092 22 H 0.108 0.892 23 H 0.081 0.919 24 H 0.087 0.913 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.064 0.936 28 H 0.083 0.917 29 H 0.044 0.956 30 H 0.080 0.920 31 H 0.035 0.965 32 H 0.079 0.921 33 H 0.047 0.953 34 H 0.040 0.960 35 H 0.017 0.983 36 H 0.022 0.978 37 H 0.266 0.734 38 H 0.063 0.937 39 H 0.020 0.980 40 H 0.077 0.923 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.416 -11.535 -4.913 27.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 S -0.092 6.092 3 C -0.160 4.160 4 H 0.099 0.901 5 C -0.146 4.146 6 C -0.150 4.150 7 C -0.063 4.063 8 N -0.287 5.287 9 C -0.057 4.057 10 C -0.126 4.126 11 C -0.047 4.047 12 C -0.571 4.571 13 H 0.045 0.955 14 C -0.197 4.197 15 N -0.596 5.596 16 Si 0.778 3.222 17 H -0.192 1.192 18 H -0.210 1.210 19 H -0.166 1.166 20 C -0.049 4.049 21 C -0.131 4.131 22 H 0.127 0.873 23 H 0.100 0.900 24 H 0.106 0.894 25 H 0.091 0.909 26 H 0.092 0.908 27 H 0.083 0.917 28 H 0.101 0.899 29 H 0.062 0.938 30 H 0.099 0.901 31 H 0.053 0.947 32 H 0.097 0.903 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.036 0.964 36 H 0.041 0.959 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.038 0.962 40 H 0.096 0.904 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -23.377 -12.460 -5.238 27.003 hybrid contribution -0.642 1.532 1.130 2.009 sum -24.019 -10.928 -4.108 26.706 Atomic orbital electron populations 1.23409 0.91477 1.07237 1.05702 1.87177 1.10650 1.13305 1.98027 1.23044 0.99328 0.91797 1.01862 0.90144 1.22257 1.00045 0.96762 0.95507 1.21392 1.01595 0.94719 0.97288 1.21946 0.86955 1.00660 0.96766 1.58782 1.23768 1.02843 1.43335 1.22090 0.94761 0.92527 0.96282 1.21293 0.94271 0.97131 0.99865 1.19494 0.93635 0.95532 0.96076 1.21534 0.92424 1.04370 1.38782 0.95474 1.26101 0.95622 1.01825 0.96111 1.70084 1.08251 1.33003 1.48253 0.85581 0.79611 0.77658 0.79313 1.19185 1.21033 1.16590 1.20885 1.00799 0.89609 0.93560 1.21242 0.93184 0.96848 1.01876 0.87314 0.89996 0.89357 0.90880 0.90754 0.91705 0.89873 0.93767 0.90142 0.94672 0.90256 0.93396 0.94109 0.96431 0.95936 0.92526 0.91838 0.96182 0.90434 0.90891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.30 10.45 113.37 1.18 -0.12 16 2 S -0.32 -6.15 21.35 -56.49 -1.21 -7.36 16 3 C -0.03 -0.59 2.16 30.26 0.07 -0.53 16 4 H 0.08 1.50 6.58 -2.41 -0.02 1.49 16 5 C -0.11 -1.64 4.79 31.27 0.15 -1.49 16 6 C -0.11 -1.90 5.41 30.16 0.16 -1.74 16 7 C 0.06 1.25 5.37 85.45 0.46 1.71 16 8 N -0.56 -14.73 3.88 -913.25 -3.54 -18.27 16 9 C 0.07 2.14 5.03 86.30 0.43 2.57 16 10 C -0.09 -3.48 5.15 30.59 0.16 -3.32 16 11 C -0.01 -0.45 4.04 29.85 0.12 -0.33 16 12 C -0.53 -31.64 9.66 25.60 0.25 -31.39 16 13 H 0.03 1.78 7.99 -2.91 -0.02 1.76 16 14 C 0.00 -0.03 5.47 84.66 0.46 0.44 16 15 N -0.95 -61.30 13.96 21.45 0.30 -61.00 16 16 Si 0.96 44.65 27.47 68.60 1.88 46.54 16 17 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 18 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 19 H -0.24 -10.36 6.54 99.48 0.65 -9.71 16 20 C 0.08 2.10 4.76 88.07 0.42 2.52 16 21 C -0.09 -2.06 5.17 30.35 0.16 -1.91 16 22 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 23 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 24 H 0.09 0.85 7.49 -2.39 -0.02 0.84 16 25 H 0.07 1.18 7.97 -2.39 -0.02 1.16 16 26 H 0.07 0.91 7.66 -2.39 -0.02 0.90 16 27 H 0.06 1.37 7.26 -2.39 -0.02 1.36 16 28 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.04 0.81 6.66 -2.39 -0.02 0.80 16 30 H 0.08 1.52 7.38 -2.39 -0.02 1.50 16 31 H 0.04 1.04 7.98 -2.39 -0.02 1.02 16 32 H 0.08 2.25 7.41 -2.39 -0.02 2.23 16 33 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 34 H 0.04 1.68 6.90 -2.39 -0.02 1.66 16 35 H 0.02 0.79 7.57 -2.38 -0.02 0.78 16 36 H 0.02 1.03 7.20 -2.39 -0.02 1.01 16 37 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 38 H 0.06 1.86 6.52 -2.38 -0.02 1.84 16 39 H 0.02 0.50 7.54 -2.39 -0.02 0.48 16 40 H 0.08 1.86 7.11 -2.39 -0.02 1.84 16 41 H 0.07 1.69 7.67 -2.38 -0.02 1.67 16 Total: -1.00 -66.90 320.62 2.37 -64.54 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: 0.91 Total: 9.14 kcal Atomic # 6 Polarization: -37.60 SS G_CDS: 4.02 Total: -33.58 kcal Atomic # 7 Polarization: -76.03 SS G_CDS: -3.24 Total: -79.27 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 1.88 Total: 46.54 kcal Atomic # 16 Polarization: -6.15 SS G_CDS: -1.21 Total: -7.36 kcal Total: -66.90 2.37 -64.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308783281.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.797 kcal (2) G-P(sol) polarization free energy of solvation -66.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds