Wall clock time and date at job start Mon Mar 30 2020 06:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81390 * 1 3 3 C 1.81405 * 103.00171 * 2 1 4 4 H 1.08997 * 109.57237 * 305.25132 * 3 2 1 5 5 C 1.50463 * 109.57338 * 65.63032 * 3 2 1 6 6 C 1.54287 * 113.03661 * 211.96503 * 5 3 2 7 7 C 1.54069 * 112.28760 * 318.30467 * 6 5 3 8 8 N 1.44266 * 111.98262 * 318.91292 * 7 6 5 9 9 C 1.46906 * 111.00341 * 219.30927 * 8 7 6 10 10 C 1.53002 * 109.46766 * 303.30392 * 9 8 7 11 11 C 1.53002 * 109.47071 * 182.21620 * 10 9 8 12 12 C 1.50693 * 109.47349 * 179.97438 * 11 10 9 13 13 H 1.08005 * 119.99940 * 0.02562 * 12 11 10 14 14 C 1.37870 * 120.00131 * 179.72051 * 12 11 10 15 15 N 1.31520 * 120.00129 * 180.27550 * 14 12 11 16 16 Si 1.86794 * 120.00050 * 0.27669 * 14 12 11 17 17 H 1.48502 * 109.47156 * 89.99779 * 16 14 12 18 18 H 1.48505 * 109.47369 * 209.99702 * 16 14 12 19 19 H 1.48499 * 109.47347 * 329.99948 * 16 14 12 20 20 C 1.47807 * 109.46257 * 96.43506 * 8 7 6 21 21 C 1.45864 * 112.91898 * 276.73704 * 20 8 7 22 22 H 1.08998 * 109.47474 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47112 * 300.00089 * 1 2 3 24 24 H 1.09002 * 109.47336 * 59.99961 * 1 2 3 25 25 H 1.08996 * 108.77075 * 332.88734 * 5 3 2 26 26 H 1.09000 * 108.77031 * 91.04800 * 5 3 2 27 27 H 1.09000 * 108.91921 * 79.02203 * 6 5 3 28 28 H 1.08998 * 108.92206 * 197.57801 * 6 5 3 29 29 H 1.08999 * 108.97965 * 198.26682 * 7 6 5 30 30 H 1.08997 * 108.97892 * 79.55646 * 7 6 5 31 31 H 1.08992 * 109.47178 * 183.30112 * 9 8 7 32 32 H 1.08999 * 109.46756 * 63.29589 * 9 8 7 33 33 H 1.09000 * 109.47431 * 62.21195 * 10 9 8 34 34 H 1.09007 * 109.47153 * 302.20875 * 10 9 8 35 35 H 1.09000 * 109.47340 * 59.99519 * 11 10 9 36 36 H 1.09007 * 109.46524 * 299.99640 * 11 10 9 37 37 H 0.96996 * 120.00233 * 180.02562 * 15 14 12 38 38 H 1.09000 * 108.79105 * 37.63115 * 20 8 7 39 39 H 1.09004 * 108.79097 * 155.97022 * 20 8 7 40 40 H 1.08999 * 109.05284 * 181.86883 * 21 20 8 41 41 H 1.08995 * 109.05580 * 300.85793 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.7266 2.2567 -0.8387 5 6 1.7655 2.3903 1.2914 6 6 1.3327 3.8626 1.1318 7 6 2.2809 4.6538 0.2106 8 7 3.6649 4.3233 0.4481 9 6 4.5125 5.5209 0.3737 10 6 4.3265 6.1934 -0.9880 11 6 5.2502 7.4092 -1.0867 12 6 5.0675 8.0713 -2.4280 13 1 4.3628 7.6657 -3.1389 14 6 5.7954 9.1983 -2.7453 15 7 5.6321 9.7793 -3.9139 16 14 7.0137 9.9002 -1.5155 17 1 8.3464 9.2816 -1.7309 18 1 7.1143 11.3701 -1.7022 19 1 6.5490 9.6071 -0.1359 20 6 4.1023 3.3034 -0.5282 21 6 3.7516 1.9456 -0.1268 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 0.9232 1.8171 1.6786 26 1 2.5814 2.3407 2.0124 27 1 0.3269 3.8919 0.7127 28 1 1.3183 4.3352 2.1139 29 1 2.1361 5.7200 0.3844 30 1 2.0359 4.4290 -0.8275 31 1 5.5569 5.2351 0.4982 32 1 4.2292 6.2161 1.1640 33 1 3.2905 6.5144 -1.0963 34 1 4.5722 5.4854 -1.7795 35 1 6.2862 7.0882 -0.9784 36 1 5.0045 8.1172 -0.2951 37 1 6.1444 10.5720 -4.1373 38 1 3.6371 3.5164 -1.4907 39 1 5.1847 3.3661 -0.6404 40 1 4.1309 1.2454 -0.8711 41 1 4.2152 1.7279 0.8353 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308783282.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:49 Heat of formation + Delta-G solvation = -16.697833 kcal Electronic energy + Delta-G solvation = -17609.052954 eV Core-core repulsion = 15035.292735 eV Total energy + Delta-G solvation = -2573.760219 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.44990 -35.48903 -33.23063 -32.56199 -31.27141 -29.19661 -27.69643 -25.46268 -25.00859 -22.74912 -20.90999 -20.33150 -19.06348 -16.95758 -16.62987 -15.85471 -15.42914 -14.71878 -14.63652 -14.35026 -14.11180 -13.92163 -13.78596 -13.05164 -12.96225 -12.77340 -12.67015 -12.37830 -11.83160 -11.63648 -11.28616 -11.20093 -11.03771 -10.85033 -10.71400 -10.57409 -10.36130 -9.99764 -9.88334 -9.86146 -9.71206 -9.24250 -8.55689 -8.01085 -7.85183 -6.06218 -4.04485 1.53077 2.41733 3.29282 3.36762 3.40348 4.04763 4.43526 4.45582 4.74880 4.87860 4.90850 4.97143 5.12909 5.19765 5.27710 5.29798 5.37899 5.44045 5.46661 5.60254 5.71680 5.77622 5.88645 5.94850 6.01708 6.03284 6.10618 6.11243 6.21010 6.24661 6.42515 6.57905 6.82858 7.23057 7.27310 7.35111 7.42771 7.77669 8.52044 8.98198 9.56356 11.07356 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.043650 B = 0.003767 C = 0.003736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.307065 B = 7430.252040 C = 7493.404992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 S -0.275 6.275 3 C -0.041 4.041 4 H 0.085 0.915 5 C -0.104 4.104 6 C -0.106 4.106 7 C 0.051 3.949 8 N -0.529 5.529 9 C 0.051 3.949 10 C -0.137 4.137 11 C -0.011 4.011 12 C -0.521 4.521 13 H 0.069 0.931 14 C 0.065 3.935 15 N -0.905 5.905 16 Si 0.881 3.119 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.265 1.265 20 C 0.054 3.946 21 C -0.090 4.090 22 H 0.097 0.903 23 H 0.076 0.924 24 H 0.075 0.925 25 H 0.054 0.946 26 H 0.077 0.923 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.040 0.960 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.011 0.989 36 H 0.015 0.985 37 H 0.263 0.737 38 H 0.042 0.958 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.845 -17.234 10.699 22.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.289 4.289 2 S -0.046 6.046 3 C -0.170 4.170 4 H 0.103 0.897 5 C -0.143 4.143 6 C -0.146 4.146 7 C -0.079 4.079 8 N -0.251 5.251 9 C -0.076 4.076 10 C -0.176 4.176 11 C -0.049 4.049 12 C -0.559 4.559 13 H 0.087 0.913 14 C -0.136 4.136 15 N -0.544 5.544 16 Si 0.709 3.291 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.190 1.190 20 C -0.075 4.075 21 C -0.129 4.129 22 H 0.116 0.884 23 H 0.095 0.905 24 H 0.094 0.906 25 H 0.073 0.927 26 H 0.096 0.904 27 H 0.074 0.926 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.058 0.942 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.029 0.971 36 H 0.033 0.967 37 H 0.073 0.927 38 H 0.060 0.940 39 H 0.094 0.906 40 H 0.091 0.909 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.081 -18.210 11.071 22.792 hybrid contribution -0.319 1.898 -0.420 1.970 sum -8.400 -16.312 10.651 21.215 Atomic orbital electron populations 1.23380 0.94493 1.06096 1.04917 1.86787 1.07129 1.12759 1.97936 1.23008 1.00499 0.91867 1.01599 0.89711 1.21535 1.01384 0.95185 0.96210 1.21969 0.97625 0.94624 1.00416 1.21915 0.88737 0.99544 0.97669 1.61843 1.02496 1.11039 1.49737 1.22492 0.96936 0.90123 0.98063 1.22120 1.00819 0.98909 0.95735 1.19502 0.94466 0.93260 0.97651 1.21152 1.24040 1.10888 0.99817 0.91298 1.25054 0.96831 0.96552 0.95161 1.69921 1.41943 1.21095 1.21419 0.86754 0.81826 0.78107 0.82449 1.20293 1.21412 1.18967 1.20971 1.01116 0.91589 0.93794 1.20431 0.91939 0.97188 1.03332 0.88381 0.90492 0.90631 0.92742 0.90409 0.92600 0.91660 0.91182 0.94170 0.91043 0.91003 0.92771 0.92849 0.97091 0.96661 0.92748 0.94026 0.90624 0.90881 0.90510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.94 10.48 101.05 1.06 0.12 16 2 S -0.27 -2.91 21.58 -107.50 -2.32 -5.23 16 3 C -0.04 -0.44 2.32 -27.21 -0.06 -0.50 16 4 H 0.08 0.95 7.17 -51.93 -0.37 0.58 16 5 C -0.10 -1.06 4.94 -27.32 -0.13 -1.20 16 6 C -0.11 -1.12 6.15 -25.50 -0.16 -1.28 16 7 C 0.05 0.65 4.04 -4.67 -0.02 0.63 16 8 N -0.53 -7.14 4.45 -239.55 -1.07 -8.21 16 9 C 0.05 0.80 5.06 -3.82 -0.02 0.78 16 10 C -0.14 -2.62 4.60 -26.73 -0.12 -2.75 16 11 C -0.01 -0.25 4.04 -27.89 -0.11 -0.37 16 12 C -0.52 -14.93 9.66 -34.45 -0.33 -15.27 16 13 H 0.07 2.13 7.99 -52.48 -0.42 1.71 16 14 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 15 N -0.90 -28.11 13.96 55.43 0.77 -27.33 16 16 Si 0.88 21.79 27.47 -169.99 -4.67 17.12 16 17 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 18 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 19 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 20 C 0.05 0.69 3.98 -6.70 -0.03 0.66 16 21 C -0.09 -1.00 4.92 -29.32 -0.14 -1.15 16 22 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.08 0.55 6.88 -51.92 -0.36 0.19 16 24 H 0.07 0.56 8.14 -51.92 -0.42 0.14 16 25 H 0.05 0.51 6.17 -51.93 -0.32 0.19 16 26 H 0.08 0.87 7.38 -51.93 -0.38 0.49 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.96 6.84 -51.93 -0.36 0.60 16 30 H 0.04 0.54 6.51 -51.93 -0.34 0.20 16 31 H 0.07 1.09 7.91 -51.93 -0.41 0.68 16 32 H 0.07 1.11 8.12 -51.93 -0.42 0.69 16 33 H 0.05 1.06 6.77 -51.93 -0.35 0.70 16 34 H 0.05 1.04 7.04 -51.93 -0.37 0.68 16 35 H 0.01 0.25 7.58 -51.93 -0.39 -0.14 16 36 H 0.02 0.36 7.19 -51.93 -0.37 -0.01 16 37 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 38 H 0.04 0.57 6.84 -51.93 -0.36 0.21 16 39 H 0.08 0.98 7.66 -51.93 -0.40 0.58 16 40 H 0.07 0.79 8.02 -51.93 -0.42 0.37 16 41 H 0.08 0.87 7.58 -51.93 -0.39 0.48 16 LS Contribution 318.38 15.07 4.80 4.80 Total: -1.00 -30.08 318.38 -9.94 -40.01 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -7.28 Total: -2.66 kcal Atomic # 6 Polarization: -18.33 SS G_CDS: -0.17 Total: -18.50 kcal Atomic # 7 Polarization: -35.25 SS G_CDS: -0.29 Total: -35.54 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.67 Total: 17.12 kcal Atomic # 16 Polarization: -2.91 SS G_CDS: -2.32 Total: -5.23 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.08 -9.94 -40.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308783282.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.317 kcal (2) G-P(sol) polarization free energy of solvation -30.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds