Wall clock time and date at job start Mon Mar 30 2020 06:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 S 1.81392 * 109.46919 * 2 1 4 4 C 1.81398 * 103.00019 * 179.97438 * 3 2 1 5 5 H 1.09002 * 110.67567 * 56.78056 * 4 3 2 6 6 C 1.54889 * 110.75491 * 293.54810 * 4 3 2 7 7 C 1.54275 * 104.19422 * 203.74155 * 6 4 3 8 8 C 1.53867 * 106.59883 * 23.60827 * 7 6 4 9 9 H 1.09001 * 110.03152 * 240.66549 * 8 7 6 10 10 N 1.46902 * 110.03273 * 119.28435 * 8 7 6 11 11 C 1.46893 * 110.99914 * 86.45337 * 10 8 7 12 12 H 1.08997 * 109.47577 * 35.00254 * 11 10 8 13 13 C 1.53002 * 109.47262 * 274.99877 * 11 10 8 14 14 C 1.53000 * 109.47440 * 155.00203 * 11 10 8 15 15 C 1.50708 * 109.46973 * 294.99977 * 14 11 10 16 16 H 1.07991 * 119.99789 * 0.02562 * 15 14 11 17 17 C 1.37877 * 120.00008 * 179.97438 * 15 14 11 18 18 N 1.31514 * 120.00089 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 119.99938 * 0.02562 * 17 15 14 20 20 H 1.48506 * 109.47297 * 269.99556 * 19 17 15 21 21 H 1.48503 * 109.47261 * 149.99737 * 19 17 15 22 22 H 1.48500 * 109.47454 * 29.99730 * 19 17 15 23 23 C 1.54268 * 106.59789 * 0.02562 * 8 7 6 24 24 H 1.08998 * 109.47490 * 60.00404 * 1 2 3 25 25 H 1.09009 * 109.47021 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47864 * 299.99889 * 1 2 3 27 27 H 1.08995 * 109.46984 * 239.99915 * 2 1 3 28 28 H 1.09003 * 109.46806 * 119.99716 * 2 1 3 29 29 H 1.09002 * 110.48709 * 85.06301 * 6 4 3 30 30 H 1.09004 * 110.48800 * 322.41489 * 6 4 3 31 31 H 1.08997 * 110.02984 * 264.31958 * 7 6 4 32 32 H 1.09003 * 110.03289 * 142.89419 * 7 6 4 33 33 H 1.00898 * 111.00171 * 322.50206 * 10 8 7 34 34 H 1.08998 * 109.47155 * 180.02562 * 13 11 10 35 35 H 1.09001 * 109.47546 * 300.00365 * 13 11 10 36 36 H 1.09001 * 109.47094 * 60.00192 * 13 11 10 37 37 H 1.08994 * 109.48028 * 175.00035 * 14 11 10 38 38 H 1.09000 * 109.47206 * 54.99889 * 14 11 10 39 39 H 0.96997 * 119.99848 * 180.02562 * 18 17 15 40 40 H 1.08996 * 110.48774 * 95.07285 * 23 8 7 41 41 H 1.09008 * 110.48089 * 217.71091 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7102 0.0000 4 6 3.9370 1.5058 0.0008 5 1 4.2568 0.9072 -0.8521 6 6 4.4167 0.8692 1.3289 7 6 5.8900 1.3106 1.4495 8 6 6.0356 2.5909 0.6087 9 1 6.7630 2.4339 -0.1878 10 7 6.4588 3.7086 1.4630 11 6 7.9215 3.7479 1.5920 12 1 8.3777 3.4300 0.6546 13 6 8.3597 2.8081 2.7170 14 6 8.3666 5.1751 1.9175 15 6 8.0444 6.0791 0.7555 16 1 7.5694 5.6761 -0.1266 17 6 8.3553 7.4209 0.8190 18 7 8.0737 8.2098 -0.1948 19 14 9.1764 8.1181 2.3451 20 1 8.1364 8.5680 3.3051 21 1 10.0307 9.2716 1.9644 22 1 10.0147 7.0692 2.9793 23 6 4.6455 2.8834 0.0069 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0278 -0.0005 26 1 -0.3635 0.5138 0.8899 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 4.3468 -0.2174 1.2781 30 1 3.8342 1.2512 2.1673 31 1 6.5460 0.5318 1.0607 32 1 6.1334 1.5184 2.4915 33 1 6.0171 3.6587 2.3688 34 1 9.4451 2.8377 2.8131 35 1 7.9036 3.1260 3.6546 36 1 8.0427 1.7913 2.4852 37 1 9.4410 5.1879 2.1007 38 1 7.8423 5.5254 2.8066 39 1 8.2927 9.1537 -0.1502 40 1 4.1004 3.5907 0.6319 41 1 4.7426 3.2665 -1.0090 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309030057.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:00 Heat of formation + Delta-G solvation = -41.390472 kcal Electronic energy + Delta-G solvation = -17364.013832 eV Core-core repulsion = 14789.182860 eV Total energy + Delta-G solvation = -2574.830972 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.90334 -36.97728 -34.53934 -33.65174 -31.86139 -29.97063 -29.23206 -27.44952 -24.62338 -24.25714 -21.89880 -21.46470 -20.86342 -18.76221 -17.55725 -17.00055 -16.58156 -16.14528 -15.89635 -15.53137 -14.97433 -14.78278 -14.52624 -14.11875 -14.03200 -13.70234 -13.50873 -13.35764 -13.22106 -12.71184 -12.55630 -12.44268 -12.38127 -12.26087 -11.91849 -11.82021 -11.70288 -11.66796 -11.50709 -11.25879 -11.04100 -10.71137 -10.66139 -8.94383 -8.66228 -8.15836 -6.14527 0.74034 1.38513 1.39978 1.51072 1.68917 2.43800 3.16631 3.32118 3.58093 3.79220 3.97092 4.05371 4.11432 4.20593 4.33992 4.42653 4.44739 4.54127 4.54563 4.59371 4.61594 4.70201 4.86501 4.88498 4.92634 4.98109 5.02272 5.15691 5.18121 5.23336 5.23803 5.27753 5.29783 5.39769 5.57833 5.78818 6.40500 6.55722 6.79497 6.94166 7.46052 9.01956 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.031034 B = 0.004231 C = 0.003878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.021114 B = 6616.657966 C = 7218.894375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.078 4.078 3 S -0.311 6.311 4 C -0.046 4.046 5 H 0.098 0.902 6 C -0.103 4.103 7 C -0.143 4.143 8 C 0.093 3.907 9 H 0.066 0.934 10 N -0.681 5.681 11 C 0.105 3.895 12 H 0.053 0.947 13 C -0.174 4.174 14 C -0.004 4.004 15 C -0.488 4.488 16 H 0.031 0.969 17 C -0.008 4.008 18 N -0.962 5.962 19 Si 0.949 3.051 20 H -0.273 1.273 21 H -0.290 1.290 22 H -0.246 1.246 23 C -0.087 4.087 24 H 0.057 0.943 25 H 0.092 0.908 26 H 0.058 0.942 27 H 0.087 0.913 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.340 0.660 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.071 0.929 37 H 0.019 0.981 38 H 0.014 0.986 39 H 0.260 0.740 40 H 0.063 0.937 41 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.645 -21.479 5.132 24.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.226 4.226 3 S -0.083 6.083 4 C -0.175 4.175 5 H 0.116 0.884 6 C -0.143 4.143 7 C -0.183 4.183 8 C -0.018 4.018 9 H 0.084 0.916 10 N -0.312 5.312 11 C -0.005 4.005 12 H 0.071 0.929 13 C -0.233 4.233 14 C -0.042 4.042 15 C -0.527 4.527 16 H 0.049 0.951 17 C -0.203 4.203 18 N -0.604 5.604 19 Si 0.773 3.227 20 H -0.199 1.199 21 H -0.216 1.216 22 H -0.169 1.169 23 C -0.126 4.126 24 H 0.076 0.924 25 H 0.110 0.890 26 H 0.077 0.923 27 H 0.105 0.895 28 H 0.109 0.891 29 H 0.103 0.897 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.159 0.841 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.090 0.910 37 H 0.038 0.962 38 H 0.032 0.968 39 H 0.069 0.931 40 H 0.082 0.918 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.276 -19.912 4.547 22.864 hybrid contribution 1.163 -0.634 0.551 1.434 sum -9.113 -20.546 5.099 23.047 Atomic orbital electron populations 1.21530 0.91615 1.03549 1.02635 1.23341 1.00520 0.93137 1.05628 1.87261 1.06968 1.16031 1.98049 1.24070 0.91312 1.00101 1.01998 0.88418 1.22617 0.95725 1.00713 0.95241 1.23001 0.96854 0.97763 1.00703 1.22161 0.95453 0.88864 0.95363 0.91608 1.60312 1.07211 1.45109 1.18524 1.21357 0.87176 0.94701 0.97275 0.92857 1.22574 1.02126 0.99792 0.98815 1.19599 0.95415 0.93823 0.95354 1.21329 1.36328 0.93049 1.01961 0.95076 1.26008 0.97030 0.97799 0.99419 1.70097 1.51314 1.05375 1.33664 0.85685 0.79027 0.78164 0.79798 1.19861 1.21634 1.16911 1.22094 0.95031 0.94719 1.00752 0.92416 0.88987 0.92252 0.89471 0.89055 0.89671 0.90801 0.90378 0.90468 0.84076 0.92200 0.92233 0.90973 0.96237 0.96784 0.93140 0.91796 0.92686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.92 71.98 0.71 -1.07 16 2 C -0.08 -1.21 6.54 71.98 0.47 -0.74 16 3 S -0.31 -7.43 21.18 -56.49 -1.20 -8.63 16 4 C -0.05 -1.04 3.42 31.89 0.11 -0.93 16 5 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 6 C -0.10 -1.94 6.16 31.67 0.20 -1.75 16 7 C -0.14 -2.97 5.14 31.32 0.16 -2.81 16 8 C 0.09 2.74 3.23 45.64 0.15 2.89 16 9 H 0.07 2.08 7.46 -2.39 -0.02 2.07 16 10 N -0.68 -24.43 5.72 -465.79 -2.67 -27.09 16 11 C 0.10 3.91 2.53 44.92 0.11 4.03 16 12 H 0.05 2.14 7.45 -2.39 -0.02 2.12 16 13 C -0.17 -4.80 8.54 71.98 0.61 -4.18 16 14 C 0.00 -0.19 3.72 29.85 0.11 -0.08 16 15 C -0.49 -28.81 9.39 25.60 0.24 -28.56 16 16 H 0.03 2.06 7.99 -2.92 -0.02 2.03 16 17 C -0.01 -0.50 5.47 84.65 0.46 -0.04 16 18 N -0.96 -63.00 13.96 21.45 0.30 -62.70 16 19 Si 0.95 46.01 27.47 68.60 1.88 47.89 16 20 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16 21 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 22 H -0.25 -10.89 6.54 99.48 0.65 -10.24 16 23 C -0.09 -2.60 5.99 31.68 0.19 -2.41 16 24 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.09 0.80 8.14 -2.38 -0.02 0.78 16 26 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.09 1.19 8.14 -2.39 -0.02 1.18 16 28 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.08 1.22 8.14 -2.39 -0.02 1.21 16 30 H 0.07 1.48 8.04 -2.39 -0.02 1.46 16 31 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.08 1.57 6.09 -2.39 -0.01 1.55 16 33 H 0.34 11.03 7.93 -89.70 -0.71 10.32 16 34 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.06 1.55 8.13 -2.39 -0.02 1.53 16 36 H 0.07 1.64 5.90 -2.39 -0.01 1.62 16 37 H 0.02 0.90 7.20 -2.39 -0.02 0.88 16 38 H 0.01 0.64 7.57 -2.39 -0.02 0.63 16 39 H 0.26 15.98 8.31 -92.71 -0.77 15.21 16 40 H 0.06 2.18 7.95 -2.39 -0.02 2.16 16 41 H 0.05 1.82 8.14 -2.38 -0.02 1.81 16 Total: -1.00 -69.49 330.57 2.06 -67.44 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: 0.21 Total: 18.76 kcal Atomic # 6 Polarization: -39.20 SS G_CDS: 3.53 Total: -35.67 kcal Atomic # 7 Polarization: -87.43 SS G_CDS: -2.37 Total: -89.79 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 1.88 Total: 47.89 kcal Atomic # 16 Polarization: -7.43 SS G_CDS: -1.20 Total: -8.63 kcal Total: -69.49 2.06 -67.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309030057.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.045 kcal (2) G-P(sol) polarization free energy of solvation -69.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds