Wall clock time and date at job start Mon Mar 30 2020 06:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 S 1.81409 * 109.46908 * 2 1 4 4 C 1.81399 * 102.99929 * 179.97438 * 3 2 1 5 5 H 1.09002 * 110.05121 * 54.96540 * 4 3 2 6 6 C 1.54264 * 110.03304 * 293.54470 * 4 3 2 7 7 C 1.54887 * 104.19643 * 217.10321 * 6 4 3 8 8 C 1.54893 * 102.74567 * 37.94365 * 7 6 4 9 9 H 1.09005 * 110.48652 * 80.86718 * 8 7 6 10 10 N 1.46895 * 110.48676 * 203.37466 * 8 7 6 11 11 C 1.46902 * 111.00561 * 273.54774 * 10 8 7 12 12 H 1.09002 * 109.46719 * 34.99912 * 11 10 8 13 13 C 1.52997 * 109.47094 * 275.00137 * 11 10 8 14 14 C 1.52992 * 109.47181 * 154.99678 * 11 10 8 15 15 C 1.50699 * 109.47482 * 295.00082 * 14 11 10 16 16 H 1.08000 * 120.00130 * 0.02562 * 15 14 11 17 17 C 1.37875 * 120.00220 * 179.97438 * 15 14 11 18 18 N 1.31518 * 119.99957 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 120.00316 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46681 * 89.99795 * 19 17 15 21 21 H 1.48497 * 109.47150 * 210.00074 * 19 17 15 22 22 H 1.48496 * 109.47009 * 330.00433 * 19 17 15 23 23 C 1.53874 * 110.03005 * 176.37538 * 4 3 2 24 24 H 1.09007 * 109.47099 * 60.00446 * 1 2 3 25 25 H 1.09005 * 109.46803 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47636 * 300.00240 * 1 2 3 27 27 H 1.08999 * 109.47660 * 240.00259 * 2 1 3 28 28 H 1.08995 * 109.46966 * 119.99207 * 2 1 3 29 29 H 1.08997 * 110.48430 * 98.42721 * 6 4 3 30 30 H 1.08999 * 110.48908 * 335.78527 * 6 4 3 31 31 H 1.08995 * 110.76032 * 279.63341 * 7 6 4 32 32 H 1.08995 * 110.75468 * 156.25414 * 7 6 4 33 33 H 1.00906 * 111.00234 * 149.59190 * 10 8 7 34 34 H 1.09002 * 109.47153 * 299.99508 * 13 11 10 35 35 H 1.09001 * 109.46832 * 179.97438 * 13 11 10 36 36 H 1.09004 * 109.47261 * 59.99681 * 13 11 10 37 37 H 1.09001 * 109.47359 * 55.00427 * 14 11 10 38 38 H 1.09002 * 109.46906 * 175.00446 * 14 11 10 39 39 H 0.96998 * 119.99888 * 180.02562 * 18 17 15 40 40 H 1.09000 * 110.03223 * 0.02562 * 23 4 3 41 41 H 1.08992 * 110.03386 * 238.57062 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7104 0.0000 4 6 3.9371 1.5060 0.0008 5 1 4.2425 0.8796 -0.8374 6 6 4.3964 0.8714 1.3297 7 6 5.7394 1.5763 1.6431 8 6 5.4758 3.0326 1.1862 9 1 4.9251 3.5790 1.9520 10 7 6.7415 3.7128 0.8811 11 6 7.3237 4.3092 2.0908 12 1 7.1127 3.6704 2.9484 13 6 6.7121 5.6924 2.3225 14 6 8.8375 4.4438 1.9152 15 6 9.4549 3.0732 1.8098 16 1 8.8300 2.1939 1.8623 17 6 10.8174 2.9416 1.6452 18 7 11.5785 4.0122 1.5808 19 14 11.5829 1.2425 1.5152 20 1 11.6208 0.8244 0.0907 21 1 12.9648 1.2793 2.0574 22 1 10.7712 0.2731 2.2941 23 6 4.6234 2.8802 -0.0905 24 1 -0.3634 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5137 0.8900 29 1 4.5478 -0.2012 1.2080 30 1 3.6694 1.0679 2.1177 31 1 6.5521 1.1323 1.0683 32 1 5.9550 1.5395 2.7109 33 1 6.6141 4.4078 0.1607 34 1 6.9230 6.3313 1.4649 35 1 7.1438 6.1347 3.2204 36 1 5.6335 5.5965 2.4476 37 1 9.0492 5.0085 1.0073 38 1 9.2579 4.9665 2.7745 39 1 12.5370 3.9197 1.4646 40 1 3.8734 3.6699 -0.1348 41 1 5.2619 2.9207 -0.9729 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309030058.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:02 Heat of formation + Delta-G solvation = -30.069242 kcal Electronic energy + Delta-G solvation = -17387.984186 eV Core-core repulsion = 14813.644139 eV Total energy + Delta-G solvation = -2574.340047 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.44330 -35.52603 -33.03003 -32.49191 -30.16897 -28.65575 -27.23275 -26.12431 -23.63925 -22.92820 -20.75851 -19.85826 -19.42297 -16.58583 -16.18950 -15.86008 -15.34819 -15.02685 -14.50353 -14.28402 -13.91383 -13.48219 -13.17164 -12.73496 -12.63362 -12.35331 -12.07091 -11.76682 -11.67709 -11.53679 -11.39217 -11.00739 -10.94136 -10.78041 -10.69574 -10.51040 -10.48304 -10.28692 -9.95241 -9.84298 -9.20484 -8.94054 -8.21991 -7.75336 -7.53460 -5.84346 -3.81468 1.59508 2.48348 3.40932 3.46696 3.49871 4.53010 4.58995 4.60231 4.68146 4.74252 4.77500 5.13028 5.29529 5.44724 5.45247 5.51114 5.52282 5.53479 5.61136 5.69256 5.79343 5.81091 5.86459 5.91742 5.95279 6.07591 6.15060 6.20684 6.39903 6.51567 6.66792 6.71722 7.08995 7.62506 7.74654 8.08221 8.10743 8.22431 8.64789 9.23975 9.79437 11.27980 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.027921 B = 0.004460 C = 0.003989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.588392 B = 6277.116359 C = 7017.585031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.090 4.090 3 S -0.271 6.271 4 C -0.046 4.046 5 H 0.087 0.913 6 C -0.121 4.121 7 C -0.107 4.107 8 C 0.087 3.913 9 H 0.042 0.958 10 N -0.657 5.657 11 C 0.089 3.911 12 H 0.064 0.936 13 C -0.180 4.180 14 C 0.033 3.967 15 C -0.485 4.485 16 H 0.059 0.941 17 C 0.049 3.951 18 N -0.905 5.905 19 Si 0.888 3.112 20 H -0.283 1.283 21 H -0.290 1.290 22 H -0.276 1.276 23 C -0.102 4.102 24 H 0.063 0.937 25 H 0.068 0.932 26 H 0.063 0.937 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.065 0.935 33 H 0.331 0.669 34 H 0.050 0.950 35 H 0.055 0.945 36 H 0.036 0.964 37 H 0.016 0.984 38 H 0.016 0.984 39 H 0.256 0.744 40 H 0.068 0.932 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.469 -5.593 -2.414 20.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.239 4.239 3 S -0.044 6.044 4 C -0.176 4.176 5 H 0.106 0.894 6 C -0.161 4.161 7 C -0.146 4.146 8 C -0.024 4.024 9 H 0.060 0.940 10 N -0.287 5.287 11 C -0.020 4.020 12 H 0.082 0.918 13 C -0.239 4.239 14 C -0.004 4.004 15 C -0.523 4.523 16 H 0.077 0.923 17 C -0.150 4.150 18 N -0.546 5.546 19 Si 0.717 3.283 20 H -0.210 1.210 21 H -0.217 1.217 22 H -0.201 1.201 23 C -0.141 4.141 24 H 0.082 0.918 25 H 0.086 0.914 26 H 0.082 0.918 27 H 0.096 0.904 28 H 0.099 0.901 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.102 0.898 32 H 0.084 0.916 33 H 0.149 0.851 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.056 0.944 37 H 0.034 0.966 38 H 0.034 0.966 39 H 0.066 0.934 40 H 0.086 0.914 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -19.531 -5.190 -2.412 20.353 hybrid contribution 0.653 -1.260 -0.032 1.420 sum -18.878 -6.450 -2.444 20.099 Atomic orbital electron populations 1.21511 0.92538 1.02291 1.03071 1.23262 0.99866 0.95953 1.04793 1.86876 1.06920 1.12616 1.97946 1.23741 0.91280 1.01103 1.01429 0.89438 1.22773 0.98665 0.99370 0.95269 1.22515 0.95908 0.94725 1.01475 1.22293 0.89880 0.95498 0.94736 0.93969 1.60665 1.23261 1.34279 1.10480 1.21809 0.98212 0.90878 0.91104 0.91799 1.22564 0.99238 1.00236 1.01877 1.19105 0.87089 0.97389 0.96840 1.21158 0.91411 0.92749 1.47022 0.92277 1.25011 0.97596 0.96127 0.96304 1.69966 1.04752 1.27954 1.51971 0.86654 0.78336 0.85249 0.78040 1.20966 1.21665 1.20122 1.22131 0.97945 0.94077 0.99974 0.91831 0.91363 0.91761 0.90372 0.90148 0.91697 0.90731 0.89802 0.91606 0.85100 0.93062 0.92549 0.94446 0.96571 0.96578 0.93402 0.91383 0.89605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 9.92 37.16 0.37 -0.64 16 2 C -0.09 -0.81 6.51 37.16 0.24 -0.57 16 3 S -0.27 -3.15 20.70 -107.50 -2.23 -5.37 16 4 C -0.05 -0.56 3.42 -25.61 -0.09 -0.65 16 5 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 6 C -0.12 -1.47 6.20 -25.07 -0.16 -1.63 16 7 C -0.11 -1.62 6.40 -24.74 -0.16 -1.78 16 8 C 0.09 1.32 2.96 -66.05 -0.20 1.13 16 9 H 0.04 0.65 7.20 -51.93 -0.37 0.28 16 10 N -0.66 -11.96 5.76 -98.01 -0.56 -12.53 16 11 C 0.09 1.79 2.39 -67.72 -0.16 1.63 16 12 H 0.06 1.32 7.74 -51.93 -0.40 0.92 16 13 C -0.18 -3.06 9.15 37.16 0.34 -2.72 16 14 C 0.03 0.84 4.65 -27.89 -0.13 0.71 16 15 C -0.48 -13.59 8.84 -34.44 -0.30 -13.90 16 16 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 17 C 0.05 1.41 5.46 -17.82 -0.10 1.31 16 18 N -0.91 -27.60 13.29 55.43 0.74 -26.86 16 19 Si 0.89 22.15 29.54 -169.99 -5.02 17.13 16 20 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 23 C -0.10 -1.35 5.97 -25.61 -0.15 -1.50 16 24 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 25 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.08 0.66 8.14 -51.92 -0.42 0.23 16 28 H 0.08 0.69 8.12 -51.93 -0.42 0.27 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.07 0.89 7.81 -51.93 -0.41 0.49 16 31 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 32 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.33 5.67 8.16 -39.29 -0.32 5.35 16 34 H 0.05 0.85 8.13 -51.93 -0.42 0.43 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.04 0.56 7.45 -51.93 -0.39 0.18 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 40 H 0.07 0.88 7.60 -51.93 -0.39 0.49 16 41 H 0.09 1.15 7.99 -51.93 -0.41 0.74 16 LS Contribution 338.28 15.07 5.10 5.10 Total: -1.00 -29.80 338.28 -10.20 -40.00 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -7.73 Total: 1.12 kcal Atomic # 6 Polarization: -18.10 SS G_CDS: -0.49 Total: -18.59 kcal Atomic # 7 Polarization: -39.56 SS G_CDS: 0.17 Total: -39.39 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Atomic # 16 Polarization: -3.15 SS G_CDS: -2.23 Total: -5.37 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.80 -10.20 -40.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309030058.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.933 kcal (2) G-P(sol) polarization free energy of solvation -29.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds