Wall clock time and date at job start Mon Mar 30 2020 06:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 S 1.81409 * 109.46908 * 2 1 4 4 C 1.81399 * 102.99929 * 179.97438 * 3 2 1 5 5 H 1.09002 * 110.05121 * 54.96540 * 4 3 2 6 6 C 1.54264 * 110.03304 * 293.54470 * 4 3 2 7 7 C 1.54887 * 104.19643 * 217.10321 * 6 4 3 8 8 C 1.54893 * 102.74567 * 37.94365 * 7 6 4 9 9 H 1.09005 * 110.48652 * 80.86718 * 8 7 6 10 10 N 1.46895 * 110.48676 * 203.37466 * 8 7 6 11 11 C 1.46902 * 111.00561 * 273.54774 * 10 8 7 12 12 H 1.09002 * 109.46719 * 34.99912 * 11 10 8 13 13 C 1.52997 * 109.47094 * 275.00137 * 11 10 8 14 14 C 1.52992 * 109.47181 * 154.99678 * 11 10 8 15 15 C 1.50699 * 109.47482 * 295.00082 * 14 11 10 16 16 H 1.08000 * 120.00130 * 0.02562 * 15 14 11 17 17 C 1.37875 * 120.00220 * 179.97438 * 15 14 11 18 18 N 1.31518 * 119.99957 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 120.00316 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46681 * 89.99795 * 19 17 15 21 21 H 1.48497 * 109.47150 * 210.00074 * 19 17 15 22 22 H 1.48496 * 109.47009 * 330.00433 * 19 17 15 23 23 C 1.53874 * 110.03005 * 176.37538 * 4 3 2 24 24 H 1.09007 * 109.47099 * 60.00446 * 1 2 3 25 25 H 1.09005 * 109.46803 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47636 * 300.00240 * 1 2 3 27 27 H 1.08999 * 109.47660 * 240.00259 * 2 1 3 28 28 H 1.08995 * 109.46966 * 119.99207 * 2 1 3 29 29 H 1.08997 * 110.48430 * 98.42721 * 6 4 3 30 30 H 1.08999 * 110.48908 * 335.78527 * 6 4 3 31 31 H 1.08995 * 110.76032 * 279.63341 * 7 6 4 32 32 H 1.08995 * 110.75468 * 156.25414 * 7 6 4 33 33 H 1.00906 * 111.00234 * 149.59190 * 10 8 7 34 34 H 1.09002 * 109.47153 * 299.99508 * 13 11 10 35 35 H 1.09001 * 109.46832 * 179.97438 * 13 11 10 36 36 H 1.09004 * 109.47261 * 59.99681 * 13 11 10 37 37 H 1.09001 * 109.47359 * 55.00427 * 14 11 10 38 38 H 1.09002 * 109.46906 * 175.00446 * 14 11 10 39 39 H 0.96998 * 119.99888 * 180.02562 * 18 17 15 40 40 H 1.09000 * 110.03223 * 0.02562 * 23 4 3 41 41 H 1.08992 * 110.03386 * 238.57062 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7104 0.0000 4 6 3.9371 1.5060 0.0008 5 1 4.2425 0.8796 -0.8374 6 6 4.3964 0.8714 1.3297 7 6 5.7394 1.5763 1.6431 8 6 5.4758 3.0326 1.1862 9 1 4.9251 3.5790 1.9520 10 7 6.7415 3.7128 0.8811 11 6 7.3237 4.3092 2.0908 12 1 7.1127 3.6704 2.9484 13 6 6.7121 5.6924 2.3225 14 6 8.8375 4.4438 1.9152 15 6 9.4549 3.0732 1.8098 16 1 8.8300 2.1939 1.8623 17 6 10.8174 2.9416 1.6452 18 7 11.5785 4.0122 1.5808 19 14 11.5829 1.2425 1.5152 20 1 11.6208 0.8244 0.0907 21 1 12.9648 1.2793 2.0574 22 1 10.7712 0.2731 2.2941 23 6 4.6234 2.8802 -0.0905 24 1 -0.3634 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5137 0.8900 29 1 4.5478 -0.2012 1.2080 30 1 3.6694 1.0679 2.1177 31 1 6.5521 1.1323 1.0683 32 1 5.9550 1.5395 2.7109 33 1 6.6141 4.4078 0.1607 34 1 6.9230 6.3313 1.4649 35 1 7.1438 6.1347 3.2204 36 1 5.6335 5.5965 2.4476 37 1 9.0492 5.0085 1.0073 38 1 9.2579 4.9665 2.7745 39 1 12.5370 3.9197 1.4646 40 1 3.8734 3.6699 -0.1348 41 1 5.2619 2.9207 -0.9729 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309030058.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:01 Heat of formation + Delta-G solvation = -46.428871 kcal Electronic energy + Delta-G solvation = -17388.693593 eV Core-core repulsion = 14813.644139 eV Total energy + Delta-G solvation = -2575.049454 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.69236 -37.03373 -34.58897 -33.65132 -31.67963 -29.75373 -29.13853 -27.34774 -25.00932 -24.26105 -21.98510 -21.07386 -20.93590 -18.34871 -17.59692 -16.96170 -16.62856 -16.24891 -15.81593 -15.45559 -15.31196 -14.71928 -14.48424 -14.12453 -13.94390 -13.50521 -13.37157 -13.20598 -13.16118 -12.72301 -12.58598 -12.42259 -12.36151 -12.20694 -12.03130 -11.99067 -11.80236 -11.68322 -11.44790 -11.07664 -11.04926 -10.72268 -10.46320 -8.99759 -8.63472 -8.07159 -6.11396 0.75278 1.42334 1.43580 1.53817 1.64874 2.49000 3.23660 3.37005 3.51207 3.62452 4.05627 4.10740 4.22268 4.25686 4.37383 4.40557 4.48116 4.50916 4.54713 4.58506 4.64188 4.73498 4.87215 4.89379 4.93187 4.96044 5.04533 5.13333 5.21377 5.23689 5.26324 5.31110 5.45161 5.54557 5.73474 5.93089 6.38094 6.54465 6.76699 7.03020 7.53969 9.05308 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.027921 B = 0.004460 C = 0.003989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.588392 B = 6277.116359 C = 7017.585031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.084 4.084 3 S -0.298 6.298 4 C -0.041 4.041 5 H 0.092 0.908 6 C -0.108 4.108 7 C -0.109 4.109 8 C 0.089 3.911 9 H 0.045 0.955 10 N -0.672 5.672 11 C 0.101 3.899 12 H 0.057 0.943 13 C -0.170 4.170 14 C 0.038 3.962 15 C -0.493 4.493 16 H 0.060 0.940 17 C -0.009 4.009 18 N -0.943 5.943 19 Si 0.956 3.044 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.265 1.265 23 C -0.095 4.095 24 H 0.060 0.940 25 H 0.088 0.912 26 H 0.060 0.940 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.336 0.664 34 H 0.053 0.947 35 H 0.055 0.945 36 H 0.061 0.939 37 H -0.010 1.010 38 H -0.011 1.011 39 H 0.257 0.743 40 H 0.072 0.928 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.295 -7.232 -2.656 22.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.232 4.232 3 S -0.070 6.070 4 C -0.170 4.170 5 H 0.111 0.889 6 C -0.148 4.148 7 C -0.149 4.149 8 C -0.021 4.021 9 H 0.063 0.937 10 N -0.303 5.303 11 C -0.009 4.009 12 H 0.075 0.925 13 C -0.229 4.229 14 C 0.000 4.000 15 C -0.532 4.532 16 H 0.078 0.922 17 C -0.204 4.204 18 N -0.586 5.586 19 Si 0.782 3.218 20 H -0.204 1.204 21 H -0.214 1.214 22 H -0.189 1.189 23 C -0.134 4.134 24 H 0.079 0.921 25 H 0.107 0.893 26 H 0.079 0.921 27 H 0.104 0.896 28 H 0.105 0.895 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.155 0.845 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.008 0.992 38 H 0.008 0.992 39 H 0.066 0.934 40 H 0.091 0.909 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -21.378 -6.834 -2.655 22.600 hybrid contribution 1.182 -0.750 0.042 1.401 sum -20.196 -7.584 -2.613 21.730 Atomic orbital electron populations 1.21522 0.91429 1.03492 1.02761 1.23363 1.00683 0.93633 1.05493 1.86985 1.06431 1.15629 1.98000 1.23630 0.91734 1.00234 1.01446 0.88930 1.22684 0.96772 0.99869 0.95458 1.22467 0.96925 0.94997 1.00462 1.22311 0.88757 0.95068 0.95978 0.93681 1.60513 1.25333 1.34540 1.09871 1.21445 0.94896 0.92857 0.91683 0.92493 1.22423 1.00484 0.98059 1.01940 1.18989 0.91060 0.95627 0.94278 1.21504 0.91738 0.93769 1.46157 0.92217 1.25879 0.98336 1.00076 0.96145 1.70104 1.05006 1.30274 1.53212 0.85579 0.77397 0.80575 0.78231 1.20398 1.21366 1.18948 1.22030 0.97675 0.95154 0.98512 0.92099 0.89329 0.92131 0.89594 0.89498 0.90284 0.90193 0.92092 0.92516 0.84526 0.92820 0.92635 0.91954 0.99199 0.99232 0.93389 0.90910 0.90004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.64 9.92 71.98 0.71 -0.93 16 2 C -0.08 -1.27 6.51 71.98 0.47 -0.80 16 3 S -0.30 -6.29 20.70 -56.49 -1.17 -7.46 16 4 C -0.04 -0.92 3.42 31.32 0.11 -0.81 16 5 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 6 C -0.11 -2.42 6.20 31.67 0.20 -2.22 16 7 C -0.11 -3.21 6.40 31.89 0.20 -3.01 16 8 C 0.09 2.63 2.96 45.99 0.14 2.77 16 9 H 0.05 1.32 7.20 -2.38 -0.02 1.31 16 10 N -0.67 -24.33 5.76 -463.99 -2.67 -27.00 16 11 C 0.10 4.07 2.39 44.91 0.11 4.18 16 12 H 0.06 2.36 7.74 -2.39 -0.02 2.35 16 13 C -0.17 -5.64 9.15 71.98 0.66 -4.98 16 14 C 0.04 1.99 4.65 29.85 0.14 2.13 16 15 C -0.49 -28.11 8.84 25.60 0.23 -27.88 16 16 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 17 C -0.01 -0.52 5.46 84.65 0.46 -0.06 16 18 N -0.94 -58.71 13.29 21.45 0.28 -58.42 16 19 Si 0.96 45.73 29.54 68.60 2.03 47.75 16 20 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 21 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 22 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 23 C -0.09 -2.36 5.97 31.32 0.19 -2.17 16 24 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 25 H 0.09 0.75 8.14 -2.38 -0.02 0.74 16 26 H 0.06 0.79 8.14 -2.39 -0.02 0.78 16 27 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.09 1.22 8.12 -2.39 -0.02 1.20 16 29 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.08 1.73 7.81 -2.39 -0.02 1.71 16 31 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.34 11.42 8.16 -89.69 -0.73 10.69 16 34 H 0.05 1.74 8.13 -2.39 -0.02 1.72 16 35 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.06 1.76 7.45 -2.38 -0.02 1.74 16 37 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 38 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 39 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 40 H 0.07 1.76 7.60 -2.39 -0.02 1.74 16 41 H 0.08 2.10 7.99 -2.39 -0.02 2.09 16 Total: -1.00 -64.19 338.28 2.31 -61.88 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: 0.23 Total: 17.03 kcal Atomic # 6 Polarization: -37.39 SS G_CDS: 3.61 Total: -33.78 kcal Atomic # 7 Polarization: -83.04 SS G_CDS: -2.39 Total: -85.43 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.75 kcal Atomic # 16 Polarization: -6.29 SS G_CDS: -1.17 Total: -7.46 kcal Total: -64.19 2.31 -61.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309030058.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.456 kcal (2) G-P(sol) polarization free energy of solvation -64.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds