Wall clock time and date at job start Mon Mar 30 2020 06:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 S 1.81399 * 109.47013 * 2 1 4 4 C 1.81403 * 102.99891 * 179.97438 * 3 2 1 5 5 H 1.09003 * 110.01531 * 54.94056 * 4 3 2 6 6 C 1.54267 * 110.03390 * 293.54744 * 4 3 2 7 7 C 1.54887 * 104.19252 * 217.10295 * 6 4 3 8 8 C 1.54887 * 102.75239 * 37.94559 * 7 6 4 9 9 H 1.09004 * 110.48926 * 80.86052 * 8 7 6 10 10 N 1.46898 * 110.48768 * 203.37829 * 8 7 6 11 11 C 1.46901 * 110.99994 * 273.54339 * 10 8 7 12 12 H 1.09005 * 109.47013 * 324.99949 * 11 10 8 13 13 C 1.52999 * 109.47083 * 84.99829 * 11 10 8 14 14 C 1.53002 * 109.47363 * 205.00206 * 11 10 8 15 15 C 1.50706 * 109.46925 * 64.99809 * 14 11 10 16 16 H 1.07999 * 120.00196 * 0.02562 * 15 14 11 17 17 C 1.37879 * 119.99394 * 180.02562 * 15 14 11 18 18 N 1.31514 * 119.99350 * 180.02562 * 17 15 14 19 19 Si 1.86789 * 120.00458 * 359.97438 * 17 15 14 20 20 H 1.48506 * 109.47200 * 90.00092 * 19 17 15 21 21 H 1.48505 * 109.47499 * 210.00153 * 19 17 15 22 22 H 1.48500 * 109.47262 * 330.00415 * 19 17 15 23 23 C 1.53878 * 110.03059 * 176.37727 * 4 3 2 24 24 H 1.09004 * 109.46936 * 299.99726 * 1 2 3 25 25 H 1.08999 * 109.47023 * 59.99592 * 1 2 3 26 26 H 1.09001 * 109.47070 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47046 * 240.00221 * 2 1 3 28 28 H 1.09003 * 109.47338 * 119.99734 * 2 1 3 29 29 H 1.09002 * 110.48511 * 98.42657 * 6 4 3 30 30 H 1.08993 * 110.48451 * 335.78463 * 6 4 3 31 31 H 1.09000 * 110.76226 * 279.62657 * 7 6 4 32 32 H 1.09002 * 110.75359 * 156.25811 * 7 6 4 33 33 H 1.00894 * 111.00406 * 37.49499 * 10 8 7 34 34 H 1.09008 * 109.47032 * 180.02562 * 13 11 10 35 35 H 1.08998 * 109.46896 * 299.99988 * 13 11 10 36 36 H 1.08993 * 109.46808 * 60.00500 * 13 11 10 37 37 H 1.09000 * 109.46497 * 305.00072 * 14 11 10 38 38 H 1.09000 * 109.47312 * 184.99852 * 14 11 10 39 39 H 0.97005 * 119.99656 * 179.97438 * 18 17 15 40 40 H 1.09000 * 110.03549 * 0.02562 * 23 4 3 41 41 H 1.08997 * 110.03312 * 238.57115 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 6 3.9371 1.5058 0.0008 5 1 4.2419 0.8791 -0.8373 6 6 4.3964 0.8711 1.3297 7 6 5.7395 1.5760 1.6430 8 6 5.4760 3.0324 1.1863 9 1 4.9253 3.5787 1.9521 10 7 6.7417 3.7125 0.8811 11 6 7.3239 4.3088 2.0908 12 1 6.5250 4.6700 2.7385 13 6 8.1458 3.2541 2.8345 14 6 8.2297 5.4777 1.6981 15 6 7.3988 6.5700 1.0755 16 1 6.3314 6.4433 0.9707 17 6 8.0014 7.7309 0.6395 18 7 7.2762 8.6843 0.0966 19 14 9.8474 7.9503 0.8213 20 1 10.5292 7.4345 -0.3930 21 1 10.1605 9.3922 0.9899 22 1 10.3204 7.1986 2.0115 23 6 4.6235 2.8800 -0.0905 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 4.5478 -0.2014 1.2080 30 1 3.6694 1.0677 2.1176 31 1 6.5522 1.1320 1.0682 32 1 5.9552 1.5392 2.7109 33 1 7.3937 3.0820 0.4391 34 1 8.5774 3.6965 3.7324 35 1 7.5004 2.4215 3.1143 36 1 8.9447 2.8931 2.1868 37 1 8.9752 5.1345 0.9807 38 1 8.7305 5.8636 2.5861 39 1 7.7001 9.5013 -0.2098 40 1 3.8735 3.6698 -0.1348 41 1 5.2620 2.9206 -0.9729 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309030059.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:04 Heat of formation + Delta-G solvation = -23.946040 kcal Electronic energy + Delta-G solvation = -17355.573647 eV Core-core repulsion = 14781.499122 eV Total energy + Delta-G solvation = -2574.074525 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.64412 -35.59428 -32.99896 -32.41193 -30.38282 -28.80068 -27.63681 -26.27598 -23.63064 -22.55796 -20.76976 -20.16674 -19.49660 -16.58825 -16.52823 -15.90725 -15.61407 -14.97719 -14.52667 -14.14969 -13.69241 -13.37889 -13.10179 -12.87180 -12.64552 -12.55289 -12.27470 -12.03614 -11.69105 -11.65642 -11.63578 -11.34516 -10.98843 -10.95593 -10.76333 -10.61677 -10.43294 -10.08724 -9.81139 -9.68067 -9.48125 -8.98576 -8.37619 -7.69279 -7.59402 -5.85873 -3.79496 1.63267 2.53602 3.39511 3.46628 3.49087 4.41973 4.56157 4.58813 4.69712 4.76240 4.80087 5.15178 5.21061 5.31108 5.45778 5.47383 5.48664 5.49212 5.55316 5.60229 5.69139 5.74111 5.78707 5.82645 5.83460 5.95265 6.04369 6.17907 6.37811 6.41790 6.46280 6.53894 6.84776 7.21696 7.35898 7.86359 7.95961 8.13152 8.77639 9.26136 9.77243 11.28345 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.032674 B = 0.004219 C = 0.003835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.755323 B = 6635.760056 C = 7299.653505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.094 4.094 3 S -0.259 6.259 4 C -0.054 4.054 5 H 0.084 0.916 6 C -0.117 4.117 7 C -0.153 4.153 8 C 0.093 3.907 9 H 0.083 0.917 10 N -0.655 5.655 11 C 0.099 3.901 12 H 0.070 0.930 13 C -0.187 4.187 14 C -0.005 4.005 15 C -0.488 4.488 16 H 0.077 0.923 17 C 0.059 3.941 18 N -0.909 5.909 19 Si 0.875 3.125 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.269 1.269 23 C -0.091 4.091 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.061 0.939 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.332 0.668 34 H 0.054 0.946 35 H 0.047 0.953 36 H 0.049 0.951 37 H 0.010 0.990 38 H 0.015 0.985 39 H 0.259 0.741 40 H 0.077 0.923 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.674 -19.926 1.985 21.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.242 4.242 3 S -0.031 6.031 4 C -0.183 4.183 5 H 0.102 0.898 6 C -0.157 4.157 7 C -0.194 4.194 8 C -0.019 4.019 9 H 0.102 0.898 10 N -0.283 5.283 11 C -0.010 4.010 12 H 0.088 0.912 13 C -0.246 4.246 14 C -0.042 4.042 15 C -0.526 4.526 16 H 0.095 0.905 17 C -0.140 4.140 18 N -0.550 5.550 19 Si 0.703 3.297 20 H -0.206 1.206 21 H -0.217 1.217 22 H -0.194 1.194 23 C -0.130 4.130 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.085 0.915 27 H 0.095 0.905 28 H 0.096 0.904 29 H 0.080 0.920 30 H 0.096 0.904 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.150 0.850 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.029 0.971 38 H 0.034 0.966 39 H 0.069 0.931 40 H 0.096 0.904 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -8.578 -18.203 1.674 20.193 hybrid contribution 2.074 -1.768 0.391 2.754 sum -6.504 -19.972 2.066 21.105 Atomic orbital electron populations 1.21506 0.92514 1.02200 1.03220 1.23271 1.00001 0.96477 1.04489 1.87137 1.06373 1.11719 1.97865 1.23835 0.92099 1.01681 1.00665 0.89758 1.22703 0.98151 0.98852 0.95985 1.23426 0.96593 0.98023 1.01356 1.22424 0.92349 0.91216 0.95873 0.89846 1.60438 1.04746 1.36311 1.26831 1.21590 0.96538 0.93805 0.89081 0.91197 1.22747 1.00647 0.99936 1.01255 1.19616 0.95061 0.93542 0.96008 1.21050 0.96193 0.98116 1.37248 0.90530 1.25024 0.97362 0.96165 0.95431 1.69922 1.35309 1.07224 1.42539 0.86866 0.87195 0.76853 0.78757 1.20633 1.21747 1.19382 1.21965 0.98268 0.93082 0.99726 0.91712 0.91726 0.91473 0.90527 0.90393 0.92048 0.90380 0.91475 0.91251 0.85000 0.92685 0.93421 0.93200 0.97133 0.96639 0.93138 0.90431 0.89823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 9.92 37.16 0.37 -0.69 16 2 C -0.09 -0.84 6.51 37.16 0.24 -0.60 16 3 S -0.26 -3.18 20.70 -107.50 -2.23 -5.40 16 4 C -0.05 -0.63 3.42 -25.61 -0.09 -0.72 16 5 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 6 C -0.12 -1.24 6.20 -25.07 -0.16 -1.40 16 7 C -0.15 -1.80 5.33 -24.74 -0.13 -1.94 16 8 C 0.09 1.39 3.16 -66.05 -0.21 1.18 16 9 H 0.08 1.37 7.51 -51.93 -0.39 0.98 16 10 N -0.66 -11.67 5.77 -98.00 -0.57 -12.24 16 11 C 0.10 1.90 2.53 -67.71 -0.17 1.73 16 12 H 0.07 1.41 7.47 -51.93 -0.39 1.02 16 13 C -0.19 -2.86 8.96 37.16 0.33 -2.53 16 14 C 0.00 -0.11 3.72 -27.88 -0.10 -0.21 16 15 C -0.49 -14.01 9.39 -34.44 -0.32 -14.33 16 16 H 0.08 2.41 7.99 -52.49 -0.42 1.99 16 17 C 0.06 1.77 5.47 -17.82 -0.10 1.67 16 18 N -0.91 -28.81 13.96 55.43 0.77 -28.03 16 19 Si 0.87 22.22 27.47 -169.99 -4.67 17.55 16 20 H -0.28 -7.04 7.11 56.52 0.40 -6.63 16 21 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 22 H -0.27 -6.53 6.54 56.52 0.37 -6.16 16 23 C -0.09 -1.31 6.22 -25.61 -0.16 -1.47 16 24 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.08 0.64 8.12 -51.92 -0.42 0.22 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.08 0.86 7.81 -51.93 -0.41 0.45 16 31 H 0.07 0.76 7.82 -51.93 -0.41 0.35 16 32 H 0.07 0.80 6.56 -51.93 -0.34 0.46 16 33 H 0.33 5.38 8.04 -39.30 -0.32 5.07 16 34 H 0.05 0.83 8.14 -51.92 -0.42 0.41 16 35 H 0.05 0.63 5.48 -51.93 -0.28 0.35 16 36 H 0.05 0.73 8.13 -51.93 -0.42 0.31 16 37 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 38 H 0.02 0.37 7.20 -51.93 -0.37 0.00 16 39 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 40 H 0.08 1.26 7.60 -51.93 -0.39 0.87 16 41 H 0.08 1.24 8.04 -51.93 -0.42 0.83 16 LS Contribution 330.12 15.07 4.97 4.97 Total: -1.00 -30.95 330.12 -9.71 -40.65 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -7.50 Total: 1.80 kcal Atomic # 6 Polarization: -18.81 SS G_CDS: -0.50 Total: -19.31 kcal Atomic # 7 Polarization: -40.48 SS G_CDS: 0.21 Total: -40.27 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.67 Total: 17.55 kcal Atomic # 16 Polarization: -3.18 SS G_CDS: -2.23 Total: -5.40 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.95 -9.71 -40.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309030059.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.709 kcal (2) G-P(sol) polarization free energy of solvation -30.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds