Wall clock time and date at job start Mon Mar 30 2020 06:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 S 1.81399 * 109.47013 * 2 1 4 4 C 1.81403 * 102.99891 * 179.97438 * 3 2 1 5 5 H 1.09003 * 110.01531 * 54.94056 * 4 3 2 6 6 C 1.54267 * 110.03390 * 293.54744 * 4 3 2 7 7 C 1.54887 * 104.19252 * 217.10295 * 6 4 3 8 8 C 1.54887 * 102.75239 * 37.94559 * 7 6 4 9 9 H 1.09004 * 110.48926 * 80.86052 * 8 7 6 10 10 N 1.46898 * 110.48768 * 203.37829 * 8 7 6 11 11 C 1.46901 * 110.99994 * 273.54339 * 10 8 7 12 12 H 1.09005 * 109.47013 * 324.99949 * 11 10 8 13 13 C 1.52999 * 109.47083 * 84.99829 * 11 10 8 14 14 C 1.53002 * 109.47363 * 205.00206 * 11 10 8 15 15 C 1.50706 * 109.46925 * 64.99809 * 14 11 10 16 16 H 1.07999 * 120.00196 * 0.02562 * 15 14 11 17 17 C 1.37879 * 119.99394 * 180.02562 * 15 14 11 18 18 N 1.31514 * 119.99350 * 180.02562 * 17 15 14 19 19 Si 1.86789 * 120.00458 * 359.97438 * 17 15 14 20 20 H 1.48506 * 109.47200 * 90.00092 * 19 17 15 21 21 H 1.48505 * 109.47499 * 210.00153 * 19 17 15 22 22 H 1.48500 * 109.47262 * 330.00415 * 19 17 15 23 23 C 1.53878 * 110.03059 * 176.37727 * 4 3 2 24 24 H 1.09004 * 109.46936 * 299.99726 * 1 2 3 25 25 H 1.08999 * 109.47023 * 59.99592 * 1 2 3 26 26 H 1.09001 * 109.47070 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47046 * 240.00221 * 2 1 3 28 28 H 1.09003 * 109.47338 * 119.99734 * 2 1 3 29 29 H 1.09002 * 110.48511 * 98.42657 * 6 4 3 30 30 H 1.08993 * 110.48451 * 335.78463 * 6 4 3 31 31 H 1.09000 * 110.76226 * 279.62657 * 7 6 4 32 32 H 1.09002 * 110.75359 * 156.25811 * 7 6 4 33 33 H 1.00894 * 111.00406 * 37.49499 * 10 8 7 34 34 H 1.09008 * 109.47032 * 180.02562 * 13 11 10 35 35 H 1.08998 * 109.46896 * 299.99988 * 13 11 10 36 36 H 1.08993 * 109.46808 * 60.00500 * 13 11 10 37 37 H 1.09000 * 109.46497 * 305.00072 * 14 11 10 38 38 H 1.09000 * 109.47312 * 184.99852 * 14 11 10 39 39 H 0.97005 * 119.99656 * 179.97438 * 18 17 15 40 40 H 1.09000 * 110.03549 * 0.02562 * 23 4 3 41 41 H 1.08997 * 110.03312 * 238.57115 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 6 3.9371 1.5058 0.0008 5 1 4.2419 0.8791 -0.8373 6 6 4.3964 0.8711 1.3297 7 6 5.7395 1.5760 1.6430 8 6 5.4760 3.0324 1.1863 9 1 4.9253 3.5787 1.9521 10 7 6.7417 3.7125 0.8811 11 6 7.3239 4.3088 2.0908 12 1 6.5250 4.6700 2.7385 13 6 8.1458 3.2541 2.8345 14 6 8.2297 5.4777 1.6981 15 6 7.3988 6.5700 1.0755 16 1 6.3314 6.4433 0.9707 17 6 8.0014 7.7309 0.6395 18 7 7.2762 8.6843 0.0966 19 14 9.8474 7.9503 0.8213 20 1 10.5292 7.4345 -0.3930 21 1 10.1605 9.3922 0.9899 22 1 10.3204 7.1986 2.0115 23 6 4.6235 2.8800 -0.0905 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 4.5478 -0.2014 1.2080 30 1 3.6694 1.0677 2.1176 31 1 6.5522 1.1320 1.0682 32 1 5.9552 1.5392 2.7109 33 1 7.3937 3.0820 0.4391 34 1 8.5774 3.6965 3.7324 35 1 7.5004 2.4215 3.1143 36 1 8.9447 2.8931 2.1868 37 1 8.9752 5.1345 0.9807 38 1 8.7305 5.8636 2.5861 39 1 7.7001 9.5013 -0.2098 40 1 3.8735 3.6698 -0.1348 41 1 5.2620 2.9206 -0.9729 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309030059.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:03 Heat of formation + Delta-G solvation = -42.764370 kcal Electronic energy + Delta-G solvation = -17356.389671 eV Core-core repulsion = 14781.499122 eV Total energy + Delta-G solvation = -2574.890549 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.83792 -37.01629 -34.54973 -33.65581 -31.90266 -29.96646 -29.25893 -27.44490 -24.63033 -24.20618 -21.84865 -21.46336 -20.90463 -18.76428 -17.59580 -17.06365 -16.72563 -16.13557 -15.81383 -15.51284 -14.93222 -14.67219 -14.59223 -14.14249 -14.00946 -13.69431 -13.41554 -13.36076 -13.26148 -12.77805 -12.59397 -12.49856 -12.33779 -12.26993 -11.96757 -11.79726 -11.73693 -11.62035 -11.52789 -11.23222 -11.05231 -10.68794 -10.66308 -8.93900 -8.66195 -8.15927 -6.14966 0.75771 1.38376 1.40353 1.51508 1.68532 2.43815 3.16009 3.30675 3.58725 3.67469 4.05491 4.08911 4.14500 4.25380 4.34945 4.41118 4.42190 4.49823 4.54398 4.58494 4.63104 4.71023 4.86893 4.89828 4.92368 4.96791 5.02444 5.14860 5.18425 5.22971 5.24168 5.26418 5.32501 5.38016 5.57752 5.78513 6.39379 6.54657 6.81451 6.93981 7.45606 9.01994 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.032674 B = 0.004219 C = 0.003835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.755323 B = 6635.760056 C = 7299.653505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.078 4.078 3 S -0.321 6.321 4 C -0.039 4.039 5 H 0.098 0.902 6 C -0.107 4.107 7 C -0.140 4.140 8 C 0.093 3.907 9 H 0.059 0.941 10 N -0.680 5.680 11 C 0.104 3.896 12 H 0.049 0.951 13 C -0.174 4.174 14 C -0.003 4.003 15 C -0.489 4.489 16 H 0.029 0.971 17 C -0.009 4.009 18 N -0.962 5.962 19 Si 0.951 3.049 20 H -0.271 1.271 21 H -0.290 1.290 22 H -0.246 1.246 23 C -0.091 4.091 24 H 0.057 0.943 25 H 0.056 0.944 26 H 0.092 0.908 27 H 0.088 0.912 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.342 0.658 34 H 0.058 0.942 35 H 0.071 0.929 36 H 0.061 0.939 37 H 0.016 0.984 38 H 0.019 0.981 39 H 0.260 0.740 40 H 0.046 0.954 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.063 -23.163 2.797 24.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.226 4.226 3 S -0.094 6.094 4 C -0.167 4.167 5 H 0.117 0.883 6 C -0.147 4.147 7 C -0.180 4.180 8 C -0.018 4.018 9 H 0.077 0.923 10 N -0.310 5.310 11 C -0.005 4.005 12 H 0.067 0.933 13 C -0.233 4.233 14 C -0.041 4.041 15 C -0.528 4.528 16 H 0.047 0.953 17 C -0.203 4.203 18 N -0.605 5.605 19 Si 0.775 3.225 20 H -0.197 1.197 21 H -0.217 1.217 22 H -0.169 1.169 23 C -0.130 4.130 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.110 0.890 27 H 0.106 0.894 28 H 0.109 0.891 29 H 0.108 0.892 30 H 0.092 0.908 31 H 0.100 0.900 32 H 0.096 0.904 33 H 0.161 0.839 34 H 0.077 0.923 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.035 0.965 38 H 0.037 0.963 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -6.969 -21.473 2.500 22.714 hybrid contribution 1.412 -0.741 0.094 1.598 sum -5.557 -22.215 2.594 23.046 Atomic orbital electron populations 1.21531 0.91739 1.03520 1.02564 1.23334 1.00454 0.93132 1.05650 1.87425 1.07766 1.16201 1.98038 1.23706 0.91039 0.99842 1.02163 0.88339 1.22658 0.97095 1.00162 0.94799 1.23284 0.97732 0.95056 1.01922 1.22337 0.90805 0.93163 0.95497 0.92301 1.60271 1.05900 1.37798 1.27021 1.21338 0.95726 0.93843 0.89619 0.93303 1.22580 1.00630 0.99148 1.00911 1.19592 0.95212 0.93701 0.95603 1.21330 0.94724 0.99835 1.36896 0.95309 1.26029 1.03248 0.95793 0.95234 1.70108 1.37874 1.08086 1.44426 0.85658 0.80082 0.76984 0.79784 1.19677 1.21675 1.16911 1.21882 0.97592 0.94236 0.99273 0.92380 0.92461 0.88969 0.89373 0.89050 0.89222 0.90778 0.90045 0.90404 0.83873 0.92271 0.91004 0.92004 0.96537 0.96278 0.93125 0.93507 0.90624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.92 71.98 0.71 -1.14 16 2 C -0.08 -1.22 6.51 71.98 0.47 -0.75 16 3 S -0.32 -7.85 20.70 -56.49 -1.17 -9.02 16 4 C -0.04 -0.87 3.42 31.32 0.11 -0.76 16 5 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 6 C -0.11 -1.99 6.20 31.67 0.20 -1.79 16 7 C -0.14 -2.92 5.33 31.88 0.17 -2.75 16 8 C 0.09 2.80 3.16 45.99 0.15 2.95 16 9 H 0.06 2.04 7.51 -2.38 -0.02 2.02 16 10 N -0.68 -24.30 5.77 -463.97 -2.68 -26.98 16 11 C 0.10 3.95 2.53 44.92 0.11 4.07 16 12 H 0.05 2.02 7.47 -2.38 -0.02 2.00 16 13 C -0.17 -4.81 8.96 71.98 0.64 -4.17 16 14 C 0.00 -0.15 3.72 29.85 0.11 -0.04 16 15 C -0.49 -29.04 9.39 25.60 0.24 -28.80 16 16 H 0.03 1.92 7.99 -2.91 -0.02 1.90 16 17 C -0.01 -0.53 5.47 84.66 0.46 -0.07 16 18 N -0.96 -63.23 13.96 21.45 0.30 -62.93 16 19 Si 0.95 45.94 27.47 68.60 1.88 47.83 16 20 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 21 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 22 H -0.25 -10.85 6.54 99.48 0.65 -10.20 16 23 C -0.09 -2.70 6.22 31.32 0.19 -2.51 16 24 H 0.06 0.87 8.14 -2.38 -0.02 0.86 16 25 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.09 1.22 8.12 -2.39 -0.02 1.20 16 29 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.07 1.47 7.81 -2.39 -0.02 1.45 16 31 H 0.08 1.53 7.82 -2.39 -0.02 1.51 16 32 H 0.08 1.53 6.56 -2.39 -0.02 1.52 16 33 H 0.34 10.67 8.04 -89.70 -0.72 9.95 16 34 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 35 H 0.07 1.65 5.48 -2.39 -0.01 1.63 16 36 H 0.06 1.58 8.13 -2.39 -0.02 1.56 16 37 H 0.02 0.75 7.57 -2.39 -0.02 0.73 16 38 H 0.02 0.88 7.20 -2.39 -0.02 0.86 16 39 H 0.26 16.02 8.31 -92.70 -0.77 15.25 16 40 H 0.05 1.66 7.60 -2.39 -0.02 1.64 16 41 H 0.08 2.33 8.04 -2.39 -0.02 2.31 16 Total: -1.00 -70.39 330.12 2.10 -68.28 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: 0.20 Total: 18.59 kcal Atomic # 6 Polarization: -39.34 SS G_CDS: 3.57 Total: -35.77 kcal Atomic # 7 Polarization: -87.53 SS G_CDS: -2.38 Total: -89.91 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 1.88 Total: 47.83 kcal Atomic # 16 Polarization: -7.85 SS G_CDS: -1.17 Total: -9.02 kcal Total: -70.39 2.10 -68.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309030059.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.519 kcal (2) G-P(sol) polarization free energy of solvation -70.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds