Wall clock time and date at job start Mon Mar 30 2020 06:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 S 1.81402 * 109.47280 * 2 1 4 4 C 1.81395 * 103.00396 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.47052 * 54.99244 * 4 3 2 6 6 C 1.53001 * 109.47013 * 294.99898 * 4 3 2 7 7 C 1.53000 * 109.47185 * 179.97438 * 6 4 3 8 8 C 1.52998 * 109.46998 * 60.00164 * 7 6 4 9 9 C 1.53001 * 109.47019 * 299.99938 * 8 7 6 10 10 H 1.08997 * 109.47098 * 300.00063 * 9 8 7 11 11 N 1.46897 * 109.46798 * 180.02562 * 9 8 7 12 12 C 1.46897 * 111.00071 * 86.30597 * 11 9 8 13 13 H 1.08997 * 109.47079 * 326.10843 * 12 11 9 14 14 C 1.53005 * 109.47209 * 206.11045 * 12 11 9 15 15 C 1.50702 * 109.47757 * 86.11338 * 12 11 9 16 16 H 1.08004 * 119.99633 * 359.97438 * 15 12 11 17 17 C 1.37874 * 120.00272 * 180.02562 * 15 12 11 18 18 N 1.31512 * 120.00152 * 359.97438 * 17 15 12 19 19 Si 1.86801 * 120.00008 * 179.97438 * 17 15 12 20 20 H 1.48508 * 109.46957 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47319 * 119.99368 * 19 17 15 22 22 H 1.48499 * 109.46973 * 239.99647 * 19 17 15 23 23 C 1.52998 * 109.47305 * 174.99979 * 4 3 2 24 24 H 1.09002 * 109.47363 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47373 * 300.00480 * 1 2 3 26 26 H 1.09000 * 109.47366 * 59.99842 * 1 2 3 27 27 H 1.08998 * 109.47420 * 240.00058 * 2 1 3 28 28 H 1.09000 * 109.47366 * 120.00158 * 2 1 3 29 29 H 1.09006 * 109.47294 * 59.99855 * 6 4 3 30 30 H 1.09003 * 109.47010 * 300.00265 * 6 4 3 31 31 H 1.08997 * 109.47195 * 300.00054 * 7 6 4 32 32 H 1.09008 * 109.46797 * 179.97438 * 7 6 4 33 33 H 1.09004 * 109.47249 * 179.97438 * 8 7 6 34 34 H 1.08997 * 109.47237 * 59.99916 * 8 7 6 35 35 H 1.00906 * 110.99540 * 210.25299 * 11 9 8 36 36 H 1.09000 * 109.47138 * 173.95460 * 14 12 11 37 37 H 1.09012 * 109.46767 * 53.95653 * 14 12 11 38 38 H 1.08998 * 109.47071 * 293.95925 * 14 12 11 39 39 H 0.96996 * 120.00387 * 180.02562 * 18 17 15 40 40 H 1.08997 * 109.47237 * 59.99894 * 23 4 3 41 41 H 1.09002 * 109.46835 * 299.99398 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 6 3.9371 1.5059 -0.0008 5 1 4.2313 0.8793 -0.8427 6 6 4.3757 0.8425 1.3063 7 6 5.8958 0.6695 1.3054 8 6 6.5649 2.0397 1.1793 9 6 6.1263 2.7031 -0.1278 10 1 6.4202 2.0763 -0.9697 11 7 6.7692 4.0183 -0.2491 12 6 8.0985 3.8999 -0.8630 13 1 8.5574 2.9597 -0.5574 14 6 8.9763 5.0676 -0.4080 15 6 7.9632 3.9284 -2.3637 16 1 6.9872 4.0244 -2.8161 17 6 9.0851 3.8308 -3.1591 18 7 10.2735 3.7134 -2.6082 19 14 8.9173 3.8654 -5.0192 20 1 7.4844 4.0033 -5.3844 21 1 9.6803 5.0170 -5.5638 22 1 9.4534 2.6028 -5.5881 23 6 4.6057 2.8763 -0.1266 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.8993 -0.1338 1.3960 30 1 4.0813 1.4690 2.1483 31 1 6.1897 0.0428 0.4634 32 1 6.2083 0.1973 2.2369 33 1 7.6480 1.9165 1.1791 34 1 6.2711 2.6664 2.0213 35 1 6.1871 4.6588 -0.7678 36 1 9.9922 4.9233 -0.7759 37 1 8.9870 5.1111 0.6812 38 1 8.5750 6.0000 -0.8050 39 1 11.0629 3.6452 -3.1677 40 1 4.3115 3.5028 0.7154 41 1 4.2933 3.3488 -1.0578 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309062268.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:33 Heat of formation + Delta-G solvation = -34.912456 kcal Electronic energy + Delta-G solvation = -17651.854901 eV Core-core repulsion = 15077.304837 eV Total energy + Delta-G solvation = -2574.550064 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.47476 -35.16998 -32.98736 -32.35191 -30.61810 -29.80511 -26.61566 -25.03176 -23.91113 -22.28325 -21.59296 -19.84130 -19.40516 -16.53815 -16.29938 -15.38371 -14.98837 -14.80692 -14.61798 -14.16732 -13.91244 -13.71345 -13.19601 -12.64942 -12.43354 -12.29536 -12.04472 -11.68902 -11.58498 -11.34490 -11.28281 -11.01907 -10.95814 -10.79467 -10.56875 -10.38993 -10.26246 -10.12375 -9.93607 -9.64192 -9.43432 -9.04355 -8.40865 -7.66343 -7.27218 -6.00286 -4.11887 1.66938 2.60352 3.25665 3.34261 3.37812 4.39696 4.70827 4.76634 4.77760 4.81916 5.17137 5.17957 5.26975 5.37771 5.42682 5.51740 5.58128 5.59283 5.67698 5.74096 5.77513 5.86340 5.98288 6.13010 6.27196 6.33451 6.42932 6.54047 6.73188 6.88315 6.93147 7.16418 7.33720 7.54529 7.75997 8.08022 8.18111 8.33623 8.67144 9.01365 9.55993 11.01413 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.024532 B = 0.004946 C = 0.004458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.107255 B = 5659.394037 C = 6279.118557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.090 4.090 3 S -0.273 6.273 4 C -0.042 4.042 5 H 0.085 0.915 6 C -0.109 4.109 7 C -0.116 4.116 8 C -0.106 4.106 9 C 0.100 3.900 10 H 0.048 0.952 11 N -0.688 5.688 12 C 0.208 3.792 13 H 0.032 0.968 14 C -0.123 4.123 15 C -0.544 4.544 16 H 0.053 0.947 17 C 0.067 3.933 18 N -0.886 5.886 19 Si 0.887 3.113 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.284 1.284 23 C -0.097 4.097 24 H 0.067 0.933 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.055 0.945 30 H 0.073 0.927 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.329 0.671 36 H 0.077 0.923 37 H 0.013 0.987 38 H 0.025 0.975 39 H 0.260 0.740 40 H 0.073 0.927 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.830 -7.595 6.844 17.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.239 4.239 3 S -0.044 6.044 4 C -0.171 4.171 5 H 0.103 0.897 6 C -0.148 4.148 7 C -0.156 4.156 8 C -0.144 4.144 9 C -0.012 4.012 10 H 0.066 0.934 11 N -0.317 5.317 12 C 0.100 3.900 13 H 0.050 0.950 14 C -0.181 4.181 15 C -0.583 4.583 16 H 0.071 0.929 17 C -0.135 4.135 18 N -0.525 5.525 19 Si 0.715 3.285 20 H -0.199 1.199 21 H -0.209 1.209 22 H -0.211 1.211 23 C -0.137 4.137 24 H 0.086 0.914 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.096 0.904 28 H 0.098 0.902 29 H 0.074 0.926 30 H 0.092 0.908 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.146 0.854 36 H 0.095 0.905 37 H 0.032 0.968 38 H 0.044 0.956 39 H 0.070 0.930 40 H 0.092 0.908 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -14.035 -6.678 7.421 17.223 hybrid contribution 0.508 -1.323 -2.169 2.591 sum -13.527 -8.002 5.252 16.570 Atomic orbital electron populations 1.21503 0.92532 1.02213 1.03109 1.23273 0.99865 0.96037 1.04696 1.86865 1.07223 1.12329 1.97986 1.23177 0.91175 1.01637 1.01083 0.89685 1.21835 0.96684 0.99797 0.96502 1.21568 0.94059 0.98410 1.01565 1.21535 1.00328 0.94333 0.98189 1.21297 0.90377 0.92902 0.96657 0.93384 1.60966 1.05965 1.08075 1.56710 1.19171 0.84393 0.95217 0.91179 0.94988 1.21673 1.02362 0.98002 0.96094 1.21890 0.93035 1.50973 0.92391 0.92852 1.24924 0.95362 0.94794 0.98431 1.69906 0.97828 1.49861 1.34878 0.86616 0.78142 0.77616 0.86088 1.19903 1.20928 1.21065 1.21550 0.95656 0.93626 1.02819 0.91417 0.91784 0.91773 0.90373 0.90241 0.92631 0.90833 0.92130 0.91936 0.91720 0.91891 0.85431 0.90469 0.96762 0.95608 0.92993 0.90830 0.91441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 9.92 37.15 0.37 -0.75 16 2 C -0.09 -0.89 6.36 37.15 0.24 -0.66 16 3 S -0.27 -3.54 21.15 -107.50 -2.27 -5.82 16 4 C -0.04 -0.57 2.65 -26.73 -0.07 -0.64 16 5 H 0.08 1.20 8.14 -51.92 -0.42 0.78 16 6 C -0.11 -1.33 5.11 -26.73 -0.14 -1.46 16 7 C -0.12 -1.53 5.92 -26.73 -0.16 -1.69 16 8 C -0.11 -1.72 5.42 -26.73 -0.14 -1.86 16 9 C 0.10 1.82 2.29 -67.69 -0.16 1.66 16 10 H 0.05 1.00 7.66 -51.93 -0.40 0.60 16 11 N -0.69 -14.43 6.06 -100.93 -0.61 -15.04 16 12 C 0.21 5.19 2.39 -68.86 -0.16 5.02 16 13 H 0.03 0.87 7.21 -51.93 -0.37 0.50 16 14 C -0.12 -3.03 9.20 37.16 0.34 -2.69 16 15 C -0.54 -14.70 8.32 -34.44 -0.29 -14.99 16 16 H 0.05 1.44 7.72 -52.48 -0.41 1.04 16 17 C 0.07 1.85 5.30 -17.82 -0.09 1.76 16 18 N -0.89 -25.18 11.39 55.43 0.63 -24.54 16 19 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 20 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 C -0.10 -1.52 4.47 -26.71 -0.12 -1.64 16 24 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.08 0.72 7.14 -51.92 -0.37 0.35 16 29 H 0.05 0.60 6.92 -51.93 -0.36 0.24 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 33 H 0.06 1.17 7.54 -51.93 -0.39 0.77 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.33 6.88 7.99 -39.29 -0.31 6.57 16 36 H 0.08 2.06 6.26 -51.93 -0.32 1.74 16 37 H 0.01 0.31 8.14 -51.92 -0.42 -0.11 16 38 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 40 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.07 1.11 8.12 -51.93 -0.42 0.69 16 LS Contribution 329.41 15.07 4.96 4.96 Total: -1.00 -27.60 329.41 -10.26 -37.86 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -7.57 Total: 4.30 kcal Atomic # 6 Polarization: -17.55 SS G_CDS: -0.38 Total: -17.93 kcal Atomic # 7 Polarization: -39.61 SS G_CDS: 0.02 Total: -39.59 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: -3.54 SS G_CDS: -2.27 Total: -5.82 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -27.60 -10.26 -37.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309062268.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.950 kcal (2) G-P(sol) polarization free energy of solvation -27.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds