Wall clock time and date at job start Mon Mar 30 2020 06:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 S 1.81402 * 109.47280 * 2 1 4 4 C 1.81395 * 103.00396 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.47052 * 54.99244 * 4 3 2 6 6 C 1.53001 * 109.47013 * 294.99898 * 4 3 2 7 7 C 1.53000 * 109.47185 * 179.97438 * 6 4 3 8 8 C 1.52998 * 109.46998 * 60.00164 * 7 6 4 9 9 C 1.53001 * 109.47019 * 299.99938 * 8 7 6 10 10 H 1.08997 * 109.47098 * 300.00063 * 9 8 7 11 11 N 1.46897 * 109.46798 * 180.02562 * 9 8 7 12 12 C 1.46897 * 111.00071 * 86.30597 * 11 9 8 13 13 H 1.08997 * 109.47079 * 326.10843 * 12 11 9 14 14 C 1.53005 * 109.47209 * 206.11045 * 12 11 9 15 15 C 1.50702 * 109.47757 * 86.11338 * 12 11 9 16 16 H 1.08004 * 119.99633 * 359.97438 * 15 12 11 17 17 C 1.37874 * 120.00272 * 180.02562 * 15 12 11 18 18 N 1.31512 * 120.00152 * 359.97438 * 17 15 12 19 19 Si 1.86801 * 120.00008 * 179.97438 * 17 15 12 20 20 H 1.48508 * 109.46957 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47319 * 119.99368 * 19 17 15 22 22 H 1.48499 * 109.46973 * 239.99647 * 19 17 15 23 23 C 1.52998 * 109.47305 * 174.99979 * 4 3 2 24 24 H 1.09002 * 109.47363 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47373 * 300.00480 * 1 2 3 26 26 H 1.09000 * 109.47366 * 59.99842 * 1 2 3 27 27 H 1.08998 * 109.47420 * 240.00058 * 2 1 3 28 28 H 1.09000 * 109.47366 * 120.00158 * 2 1 3 29 29 H 1.09006 * 109.47294 * 59.99855 * 6 4 3 30 30 H 1.09003 * 109.47010 * 300.00265 * 6 4 3 31 31 H 1.08997 * 109.47195 * 300.00054 * 7 6 4 32 32 H 1.09008 * 109.46797 * 179.97438 * 7 6 4 33 33 H 1.09004 * 109.47249 * 179.97438 * 8 7 6 34 34 H 1.08997 * 109.47237 * 59.99916 * 8 7 6 35 35 H 1.00906 * 110.99540 * 210.25299 * 11 9 8 36 36 H 1.09000 * 109.47138 * 173.95460 * 14 12 11 37 37 H 1.09012 * 109.46767 * 53.95653 * 14 12 11 38 38 H 1.08998 * 109.47071 * 293.95925 * 14 12 11 39 39 H 0.96996 * 120.00387 * 180.02562 * 18 17 15 40 40 H 1.08997 * 109.47237 * 59.99894 * 23 4 3 41 41 H 1.09002 * 109.46835 * 299.99398 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 6 3.9371 1.5059 -0.0008 5 1 4.2313 0.8793 -0.8427 6 6 4.3757 0.8425 1.3063 7 6 5.8958 0.6695 1.3054 8 6 6.5649 2.0397 1.1793 9 6 6.1263 2.7031 -0.1278 10 1 6.4202 2.0763 -0.9697 11 7 6.7692 4.0183 -0.2491 12 6 8.0985 3.8999 -0.8630 13 1 8.5574 2.9597 -0.5574 14 6 8.9763 5.0676 -0.4080 15 6 7.9632 3.9284 -2.3637 16 1 6.9872 4.0244 -2.8161 17 6 9.0851 3.8308 -3.1591 18 7 10.2735 3.7134 -2.6082 19 14 8.9173 3.8654 -5.0192 20 1 7.4844 4.0033 -5.3844 21 1 9.6803 5.0170 -5.5638 22 1 9.4534 2.6028 -5.5881 23 6 4.6057 2.8763 -0.1266 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.8993 -0.1338 1.3960 30 1 4.0813 1.4690 2.1483 31 1 6.1897 0.0428 0.4634 32 1 6.2083 0.1973 2.2369 33 1 7.6480 1.9165 1.1791 34 1 6.2711 2.6664 2.0213 35 1 6.1871 4.6588 -0.7678 36 1 9.9922 4.9233 -0.7759 37 1 8.9870 5.1111 0.6812 38 1 8.5750 6.0000 -0.8050 39 1 11.0629 3.6452 -3.1677 40 1 4.3115 3.5028 0.7154 41 1 4.2933 3.3488 -1.0578 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309062268.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:33 Heat of formation + Delta-G solvation = -49.489774 kcal Electronic energy + Delta-G solvation = -17652.487021 eV Core-core repulsion = 15077.304837 eV Total energy + Delta-G solvation = -2575.182184 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.83583 -36.92499 -34.28939 -33.64945 -31.84757 -31.49283 -28.24211 -27.16028 -24.76117 -23.44292 -22.91396 -21.72910 -20.69736 -18.60380 -17.40107 -16.79667 -16.51250 -15.88241 -15.79263 -15.55028 -15.25848 -15.04651 -14.60159 -14.24921 -13.72292 -13.56447 -13.27732 -13.19916 -12.92413 -12.84401 -12.66077 -12.43451 -12.36658 -12.24835 -12.17168 -12.05801 -11.96131 -11.57612 -11.34069 -11.12211 -10.99013 -10.62252 -10.52668 -9.09865 -8.66928 -8.09397 -6.30175 0.70185 1.35231 1.37995 1.48156 1.65655 2.38173 3.12421 3.43200 3.67662 3.93476 4.01951 4.05229 4.12658 4.22300 4.38365 4.43951 4.47059 4.52432 4.56640 4.68113 4.85981 4.87574 4.92444 4.98756 5.08727 5.09871 5.16320 5.17485 5.23527 5.24299 5.28763 5.37833 5.48006 5.53901 5.68448 6.03951 6.15857 6.37341 6.80333 6.99176 7.41584 8.89551 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.024532 B = 0.004946 C = 0.004458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.107255 B = 5659.394037 C = 6279.118557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.081 4.081 3 S -0.304 6.304 4 C -0.037 4.037 5 H 0.077 0.923 6 C -0.100 4.100 7 C -0.110 4.110 8 C -0.101 4.101 9 C 0.101 3.899 10 H 0.017 0.983 11 N -0.682 5.682 12 C 0.215 3.785 13 H 0.003 0.997 14 C -0.113 4.113 15 C -0.558 4.558 16 H 0.048 0.952 17 C 0.020 3.980 18 N -0.913 5.913 19 Si 0.950 3.050 20 H -0.272 1.272 21 H -0.278 1.278 22 H -0.280 1.280 23 C -0.086 4.086 24 H 0.091 0.909 25 H 0.063 0.937 26 H 0.057 0.943 27 H 0.081 0.919 28 H 0.093 0.907 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.054 0.946 32 H 0.085 0.915 33 H 0.039 0.961 34 H 0.069 0.931 35 H 0.329 0.671 36 H 0.054 0.946 37 H 0.029 0.971 38 H 0.024 0.976 39 H 0.262 0.738 40 H 0.077 0.923 41 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.541 -8.692 7.189 19.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.230 4.230 3 S -0.075 6.075 4 C -0.166 4.166 5 H 0.095 0.905 6 C -0.139 4.139 7 C -0.149 4.149 8 C -0.139 4.139 9 C -0.011 4.011 10 H 0.035 0.965 11 N -0.311 5.311 12 C 0.107 3.893 13 H 0.021 0.979 14 C -0.171 4.171 15 C -0.597 4.597 16 H 0.066 0.934 17 C -0.180 4.180 18 N -0.552 5.552 19 Si 0.776 3.224 20 H -0.196 1.196 21 H -0.204 1.204 22 H -0.206 1.206 23 C -0.125 4.125 24 H 0.109 0.891 25 H 0.082 0.918 26 H 0.076 0.924 27 H 0.100 0.900 28 H 0.111 0.889 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.073 0.927 32 H 0.103 0.897 33 H 0.058 0.942 34 H 0.087 0.913 35 H 0.145 0.855 36 H 0.073 0.927 37 H 0.048 0.952 38 H 0.043 0.957 39 H 0.072 0.928 40 H 0.095 0.905 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -15.755 -7.776 7.775 19.213 hybrid contribution 1.001 -1.006 -2.257 2.666 sum -14.754 -8.782 5.518 18.035 Atomic orbital electron populations 1.21519 0.91248 1.03583 1.02787 1.23391 1.00776 0.93238 1.05547 1.86979 1.06475 1.15964 1.98082 1.23035 0.91791 0.99963 1.01807 0.90463 1.21790 0.95653 1.00933 0.95543 1.21524 0.94707 0.96193 1.02510 1.21478 0.99101 0.96333 0.97012 1.21340 0.92205 0.90942 0.96638 0.96522 1.60930 1.04772 1.09697 1.55699 1.18934 0.86163 0.93758 0.90488 0.97929 1.21521 1.00920 0.97732 0.96940 1.22141 0.92883 1.50987 0.93660 0.93365 1.25662 0.95088 0.94495 1.02722 1.70021 0.98401 1.50363 1.36380 0.85628 0.78116 0.77722 0.80892 1.19603 1.20377 1.20608 1.21373 0.93608 0.95248 1.02271 0.89083 0.91842 0.92396 0.90005 0.88863 0.90273 0.90416 0.92713 0.89660 0.94177 0.91276 0.85451 0.92743 0.95206 0.95701 0.92831 0.90482 0.92716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.83 9.92 71.98 0.71 -1.12 16 2 C -0.08 -1.39 6.36 71.98 0.46 -0.93 16 3 S -0.30 -7.39 21.15 -56.49 -1.19 -8.59 16 4 C -0.04 -0.96 2.65 30.59 0.08 -0.88 16 5 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 6 C -0.10 -2.19 5.11 30.59 0.16 -2.04 16 7 C -0.11 -2.72 5.92 30.59 0.18 -2.54 16 8 C -0.10 -3.27 5.42 30.59 0.17 -3.11 16 9 C 0.10 3.74 2.29 44.93 0.10 3.84 16 10 H 0.02 0.72 7.66 -2.39 -0.02 0.71 16 11 N -0.68 -29.19 6.06 -473.24 -2.87 -32.06 16 12 C 0.22 11.02 2.39 44.17 0.11 11.13 16 13 H 0.00 0.16 7.21 -2.39 -0.02 0.14 16 14 C -0.11 -5.66 9.20 71.98 0.66 -5.00 16 15 C -0.56 -30.74 8.32 25.60 0.21 -30.53 16 16 H 0.05 2.65 7.72 -2.91 -0.02 2.63 16 17 C 0.02 1.13 5.30 84.65 0.45 1.58 16 18 N -0.91 -52.68 11.39 21.45 0.24 -52.44 16 19 Si 0.95 43.84 29.54 68.60 2.03 45.87 16 20 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 21 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 22 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 23 C -0.09 -2.67 4.47 30.61 0.14 -2.53 16 24 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.09 1.36 7.14 -2.39 -0.02 1.34 16 29 H 0.08 1.41 6.92 -2.38 -0.02 1.39 16 30 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 33 H 0.04 1.48 7.54 -2.38 -0.02 1.46 16 34 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.33 13.99 7.99 -89.69 -0.72 13.27 16 36 H 0.05 2.97 6.26 -2.39 -0.01 2.96 16 37 H 0.03 1.35 8.14 -2.38 -0.02 1.33 16 38 H 0.02 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.26 14.36 8.31 -92.71 -0.77 13.58 16 40 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 41 H 0.05 1.82 8.12 -2.39 -0.02 1.80 16 Total: -1.00 -59.52 329.41 1.89 -57.63 By element: Atomic # 1 Polarization: 21.44 SS G_CDS: 0.26 Total: 21.69 kcal Atomic # 6 Polarization: -35.54 SS G_CDS: 3.43 Total: -32.11 kcal Atomic # 7 Polarization: -81.87 SS G_CDS: -2.62 Total: -84.49 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Atomic # 16 Polarization: -7.39 SS G_CDS: -1.19 Total: -8.59 kcal Total: -59.52 1.89 -57.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309062268.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.142 kcal (2) G-P(sol) polarization free energy of solvation -59.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds