Wall clock time and date at job start Mon Mar 30 2020 06:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 S 1.81397 * 109.47558 * 2 1 4 4 C 1.81397 * 103.00526 * 179.97438 * 3 2 1 5 5 H 1.09009 * 109.46370 * 55.00127 * 4 3 2 6 6 C 1.52993 * 109.47051 * 295.00486 * 4 3 2 7 7 C 1.53001 * 109.46994 * 179.97438 * 6 4 3 8 8 C 1.53002 * 109.47366 * 59.99760 * 7 6 4 9 9 C 1.53003 * 109.46757 * 299.99862 * 8 7 6 10 10 H 1.09005 * 109.47036 * 179.97438 * 9 8 7 11 11 N 1.46901 * 109.47246 * 299.99915 * 9 8 7 12 12 C 1.46897 * 110.99803 * 274.99985 * 11 9 8 13 13 H 1.09000 * 109.47090 * 35.00364 * 12 11 9 14 14 C 1.52998 * 109.47338 * 274.99961 * 12 11 9 15 15 C 1.50699 * 109.46869 * 154.99973 * 12 11 9 16 16 H 1.08005 * 120.00311 * 5.46585 * 15 12 11 17 17 C 1.37870 * 120.00240 * 185.45862 * 15 12 11 18 18 N 1.31520 * 120.00127 * 9.54747 * 17 15 12 19 19 Si 1.86799 * 120.00389 * 189.54596 * 17 15 12 20 20 H 1.48506 * 109.47141 * 84.99852 * 19 17 15 21 21 H 1.48499 * 109.47383 * 204.99460 * 19 17 15 22 22 H 1.48503 * 109.47068 * 324.99720 * 19 17 15 23 23 C 1.53000 * 109.47227 * 60.00314 * 9 8 7 24 24 H 1.09000 * 109.47292 * 59.99383 * 1 2 3 25 25 H 1.08993 * 109.47529 * 179.97438 * 1 2 3 26 26 H 1.09009 * 109.46911 * 300.00351 * 1 2 3 27 27 H 1.09005 * 109.47105 * 240.00120 * 2 1 3 28 28 H 1.08996 * 109.47486 * 120.00146 * 2 1 3 29 29 H 1.09000 * 109.46676 * 299.99238 * 6 4 3 30 30 H 1.08996 * 109.47518 * 59.99744 * 6 4 3 31 31 H 1.09000 * 109.47498 * 179.97438 * 7 6 4 32 32 H 1.09000 * 109.46965 * 299.99279 * 7 6 4 33 33 H 1.09000 * 109.47023 * 179.97438 * 8 7 6 34 34 H 1.08995 * 109.47023 * 59.99915 * 8 7 6 35 35 H 1.00893 * 110.99442 * 38.95814 * 11 9 8 36 36 H 1.09003 * 109.47047 * 303.75107 * 14 12 11 37 37 H 1.08998 * 109.47133 * 63.74553 * 14 12 11 38 38 H 1.08996 * 109.47189 * 183.74685 * 14 12 11 39 39 H 0.96995 * 120.00144 * 179.97438 * 18 17 15 40 40 H 1.09003 * 109.47436 * 59.99212 * 23 9 8 41 41 H 1.08992 * 109.47305 * 179.97438 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1348 1.7102 0.0000 4 6 3.9372 1.5058 0.0008 5 1 4.2320 0.8790 -0.8409 6 6 4.3746 0.8427 1.3083 7 6 5.8948 0.6697 1.3087 8 6 6.5641 2.0398 1.1828 9 6 6.1266 2.7028 -0.1249 10 1 6.6031 3.6791 -0.2144 11 7 6.5236 1.8578 -1.2591 12 6 7.9107 2.1304 -1.6584 13 1 8.5044 2.3624 -0.7743 14 6 7.9403 3.3205 -2.6194 15 6 8.4837 0.9168 -2.3439 16 1 7.8530 0.0644 -2.5494 17 6 9.8130 0.8946 -2.7090 18 7 10.6241 1.8443 -2.2969 19 14 10.4622 -0.4843 -3.7891 20 1 10.2229 -0.1499 -5.2161 21 1 11.9195 -0.6504 -3.5573 22 1 9.7601 -1.7489 -3.4526 23 6 4.6064 2.8759 -0.1252 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 4.0798 1.4695 2.1499 30 1 3.8982 -0.1336 1.3978 31 1 6.2066 0.1977 2.2404 32 1 6.1893 0.0427 0.4671 33 1 7.6471 1.9165 1.1835 34 1 6.2696 2.6667 2.0244 35 1 6.3944 0.8805 -1.0444 36 1 7.2933 3.1150 -3.4723 37 1 7.5879 4.2134 -2.1030 38 1 8.9606 3.4810 -2.9676 39 1 11.5594 1.8285 -2.5534 40 1 4.3119 3.5028 0.7164 41 1 4.2948 3.3486 -1.0566 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309062269.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:36 Heat of formation + Delta-G solvation = -31.136187 kcal Electronic energy + Delta-G solvation = -17889.919896 eV Core-core repulsion = 15315.533583 eV Total energy + Delta-G solvation = -2574.386313 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.84056 -34.81207 -32.91243 -32.21518 -30.55069 -29.78825 -26.96446 -25.08505 -23.83365 -22.23446 -22.03629 -20.31808 -18.29309 -16.82142 -16.12813 -15.36260 -14.94683 -14.75221 -14.57452 -14.38917 -13.95112 -13.54974 -12.87616 -12.71521 -12.50161 -12.29534 -11.93423 -11.82534 -11.58102 -11.54857 -11.32093 -11.15022 -10.90578 -10.79684 -10.47296 -10.39051 -10.26425 -10.09156 -9.97636 -9.59933 -9.51716 -8.86875 -8.44455 -7.57283 -7.22321 -6.06464 -4.08316 1.78031 2.70533 3.29474 3.35952 3.38143 4.40151 4.80350 4.85646 4.88071 4.90857 5.23154 5.25503 5.27699 5.32334 5.45073 5.54350 5.57823 5.65973 5.69551 5.75545 5.82962 5.92337 5.95242 6.11947 6.21825 6.29550 6.44530 6.52193 6.60905 6.69896 6.85655 7.12411 7.20271 7.45253 7.78166 7.86912 8.18219 8.38458 8.69882 9.03190 9.56738 11.02652 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.027051 B = 0.004955 C = 0.004701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.829585 B = 5649.699428 C = 5954.763607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.089 4.089 3 S -0.282 6.282 4 C -0.039 4.039 5 H 0.096 0.904 6 C -0.109 4.109 7 C -0.116 4.116 8 C -0.148 4.148 9 C 0.092 3.908 10 H 0.076 0.924 11 N -0.683 5.683 12 C 0.210 3.790 13 H 0.010 0.990 14 C -0.119 4.119 15 C -0.520 4.520 16 H 0.057 0.943 17 C 0.065 3.935 18 N -0.888 5.888 19 Si 0.891 3.109 20 H -0.279 1.279 21 H -0.288 1.288 22 H -0.275 1.275 23 C -0.082 4.082 24 H 0.063 0.937 25 H 0.066 0.934 26 H 0.062 0.938 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.056 0.944 35 H 0.331 0.669 36 H 0.033 0.967 37 H 0.008 0.992 38 H 0.061 0.939 39 H 0.261 0.739 40 H 0.061 0.939 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.326 -1.939 7.252 16.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.237 4.237 3 S -0.053 6.053 4 C -0.167 4.167 5 H 0.115 0.885 6 C -0.149 4.149 7 C -0.156 4.156 8 C -0.188 4.188 9 C -0.020 4.020 10 H 0.094 0.906 11 N -0.315 5.315 12 C 0.102 3.898 13 H 0.028 0.972 14 C -0.177 4.177 15 C -0.558 4.558 16 H 0.076 0.924 17 C -0.137 4.137 18 N -0.526 5.526 19 Si 0.719 3.281 20 H -0.205 1.205 21 H -0.214 1.214 22 H -0.200 1.200 23 C -0.122 4.122 24 H 0.082 0.918 25 H 0.085 0.915 26 H 0.081 0.919 27 H 0.098 0.902 28 H 0.096 0.904 29 H 0.087 0.913 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.075 0.925 35 H 0.151 0.849 36 H 0.053 0.947 37 H 0.027 0.973 38 H 0.080 0.920 39 H 0.071 0.929 40 H 0.079 0.921 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -15.049 -0.530 6.732 16.495 hybrid contribution 1.716 -2.279 0.083 2.854 sum -13.333 -2.809 6.815 15.235 Atomic orbital electron populations 1.21502 0.92659 1.02156 1.02991 1.23254 0.99711 0.96000 1.04759 1.86735 1.07967 1.12550 1.98004 1.23162 0.90402 1.02107 1.01067 0.88530 1.21840 0.96484 0.99905 0.96660 1.21526 0.94024 0.98076 1.01951 1.22191 1.01062 0.96405 0.99094 1.21481 0.93139 0.97978 0.89451 0.90584 1.60871 1.27309 1.08857 1.34492 1.19099 0.82280 0.94417 0.94005 0.97200 1.21659 1.00887 0.96087 0.99108 1.21198 0.94522 1.01082 1.39041 0.92438 1.24899 0.96700 0.96117 0.95992 1.69968 1.04686 1.33928 1.44029 0.86636 0.77759 0.82377 0.81343 1.20518 1.21401 1.20050 1.21367 0.95149 0.93537 1.02109 0.91791 0.91473 0.91915 0.90221 0.90362 0.91277 0.92593 0.92084 0.91259 0.91286 0.92478 0.84928 0.94749 0.97310 0.91976 0.92939 0.92066 0.90770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.18 9.92 37.16 0.37 -0.81 16 2 C -0.09 -0.94 6.36 37.16 0.24 -0.70 16 3 S -0.28 -3.74 21.15 -107.50 -2.27 -6.01 16 4 C -0.04 -0.54 2.41 -26.73 -0.06 -0.61 16 5 H 0.10 1.50 7.21 -51.92 -0.37 1.13 16 6 C -0.11 -1.39 5.11 -26.73 -0.14 -1.53 16 7 C -0.12 -1.64 5.67 -26.73 -0.15 -1.79 16 8 C -0.15 -2.33 5.50 -26.73 -0.15 -2.48 16 9 C 0.09 1.59 2.67 -67.71 -0.18 1.41 16 10 H 0.08 1.40 7.15 -51.93 -0.37 1.03 16 11 N -0.68 -13.92 5.57 -100.95 -0.56 -14.48 16 12 C 0.21 5.15 2.28 -68.87 -0.16 5.00 16 13 H 0.01 0.28 7.06 -51.93 -0.37 -0.09 16 14 C -0.12 -2.89 9.26 37.16 0.34 -2.55 16 15 C -0.52 -14.01 8.48 -34.44 -0.29 -14.31 16 16 H 0.06 1.54 7.69 -52.48 -0.40 1.14 16 17 C 0.07 1.79 5.17 -17.82 -0.09 1.69 16 18 N -0.89 -25.28 12.16 55.43 0.67 -24.61 16 19 Si 0.89 21.15 29.55 -169.99 -5.02 16.13 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 C -0.08 -1.24 4.93 -26.73 -0.13 -1.37 16 24 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 27 H 0.08 0.85 8.14 -51.92 -0.42 0.42 16 28 H 0.08 0.77 7.14 -51.93 -0.37 0.40 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.06 0.65 6.92 -51.93 -0.36 0.29 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.07 1.08 6.26 -51.93 -0.32 0.76 16 33 H 0.07 1.24 7.43 -51.93 -0.39 0.86 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.33 6.66 5.09 -39.30 -0.20 6.46 16 36 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.01 0.18 7.48 -51.93 -0.39 -0.21 16 38 H 0.06 1.64 6.83 -51.93 -0.35 1.28 16 39 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 40 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 323.47 15.07 4.87 4.87 Total: -1.00 -27.47 323.47 -9.98 -37.45 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -7.26 Total: 4.69 kcal Atomic # 6 Polarization: -17.64 SS G_CDS: -0.40 Total: -18.04 kcal Atomic # 7 Polarization: -39.20 SS G_CDS: 0.11 Total: -39.09 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: -3.74 SS G_CDS: -2.27 Total: -6.01 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -27.47 -9.98 -37.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309062269.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.312 kcal (2) G-P(sol) polarization free energy of solvation -27.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds