Wall clock time and date at job start Mon Mar 30 2020 06:16:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 S 1.81397 * 109.47558 * 2 1 4 4 C 1.81397 * 103.00526 * 179.97438 * 3 2 1 5 5 H 1.09009 * 109.46370 * 55.00127 * 4 3 2 6 6 C 1.52993 * 109.47051 * 295.00486 * 4 3 2 7 7 C 1.53001 * 109.46994 * 179.97438 * 6 4 3 8 8 C 1.53002 * 109.47366 * 59.99760 * 7 6 4 9 9 C 1.53003 * 109.46757 * 299.99862 * 8 7 6 10 10 H 1.09005 * 109.47036 * 179.97438 * 9 8 7 11 11 N 1.46901 * 109.47246 * 299.99915 * 9 8 7 12 12 C 1.46897 * 110.99803 * 274.99985 * 11 9 8 13 13 H 1.09000 * 109.47090 * 35.00364 * 12 11 9 14 14 C 1.52998 * 109.47338 * 274.99961 * 12 11 9 15 15 C 1.50699 * 109.46869 * 154.99973 * 12 11 9 16 16 H 1.08005 * 120.00311 * 5.46585 * 15 12 11 17 17 C 1.37870 * 120.00240 * 185.45862 * 15 12 11 18 18 N 1.31520 * 120.00127 * 9.54747 * 17 15 12 19 19 Si 1.86799 * 120.00389 * 189.54596 * 17 15 12 20 20 H 1.48506 * 109.47141 * 84.99852 * 19 17 15 21 21 H 1.48499 * 109.47383 * 204.99460 * 19 17 15 22 22 H 1.48503 * 109.47068 * 324.99720 * 19 17 15 23 23 C 1.53000 * 109.47227 * 60.00314 * 9 8 7 24 24 H 1.09000 * 109.47292 * 59.99383 * 1 2 3 25 25 H 1.08993 * 109.47529 * 179.97438 * 1 2 3 26 26 H 1.09009 * 109.46911 * 300.00351 * 1 2 3 27 27 H 1.09005 * 109.47105 * 240.00120 * 2 1 3 28 28 H 1.08996 * 109.47486 * 120.00146 * 2 1 3 29 29 H 1.09000 * 109.46676 * 299.99238 * 6 4 3 30 30 H 1.08996 * 109.47518 * 59.99744 * 6 4 3 31 31 H 1.09000 * 109.47498 * 179.97438 * 7 6 4 32 32 H 1.09000 * 109.46965 * 299.99279 * 7 6 4 33 33 H 1.09000 * 109.47023 * 179.97438 * 8 7 6 34 34 H 1.08995 * 109.47023 * 59.99915 * 8 7 6 35 35 H 1.00893 * 110.99442 * 38.95814 * 11 9 8 36 36 H 1.09003 * 109.47047 * 303.75107 * 14 12 11 37 37 H 1.08998 * 109.47133 * 63.74553 * 14 12 11 38 38 H 1.08996 * 109.47189 * 183.74685 * 14 12 11 39 39 H 0.96995 * 120.00144 * 179.97438 * 18 17 15 40 40 H 1.09003 * 109.47436 * 59.99212 * 23 9 8 41 41 H 1.08992 * 109.47305 * 179.97438 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1348 1.7102 0.0000 4 6 3.9372 1.5058 0.0008 5 1 4.2320 0.8790 -0.8409 6 6 4.3746 0.8427 1.3083 7 6 5.8948 0.6697 1.3087 8 6 6.5641 2.0398 1.1828 9 6 6.1266 2.7028 -0.1249 10 1 6.6031 3.6791 -0.2144 11 7 6.5236 1.8578 -1.2591 12 6 7.9107 2.1304 -1.6584 13 1 8.5044 2.3624 -0.7743 14 6 7.9403 3.3205 -2.6194 15 6 8.4837 0.9168 -2.3439 16 1 7.8530 0.0644 -2.5494 17 6 9.8130 0.8946 -2.7090 18 7 10.6241 1.8443 -2.2969 19 14 10.4622 -0.4843 -3.7891 20 1 10.2229 -0.1499 -5.2161 21 1 11.9195 -0.6504 -3.5573 22 1 9.7601 -1.7489 -3.4526 23 6 4.6064 2.8759 -0.1252 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 4.0798 1.4695 2.1499 30 1 3.8982 -0.1336 1.3978 31 1 6.2066 0.1977 2.2404 32 1 6.1893 0.0427 0.4671 33 1 7.6471 1.9165 1.1835 34 1 6.2696 2.6667 2.0244 35 1 6.3944 0.8805 -1.0444 36 1 7.2933 3.1150 -3.4723 37 1 7.5879 4.2134 -2.1030 38 1 8.9606 3.4810 -2.9676 39 1 11.5594 1.8285 -2.5534 40 1 4.3119 3.5028 0.7164 41 1 4.2948 3.3486 -1.0566 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309062269.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:35 Heat of formation + Delta-G solvation = -45.316420 kcal Electronic energy + Delta-G solvation = -17890.534797 eV Core-core repulsion = 15315.533583 eV Total energy + Delta-G solvation = -2575.001214 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.19737 -36.57648 -34.11316 -33.62066 -31.75740 -31.40081 -28.65399 -27.16440 -24.70186 -23.47742 -23.18862 -22.13481 -19.70735 -18.62258 -17.48767 -16.77385 -16.38218 -15.92576 -15.84148 -15.54052 -15.46347 -14.98767 -14.35426 -14.01654 -13.88527 -13.54727 -13.35733 -13.18746 -12.98432 -12.75821 -12.66786 -12.56149 -12.47129 -12.32264 -12.27631 -12.06241 -11.77448 -11.56566 -11.37852 -10.92079 -10.88437 -10.62873 -10.51580 -8.94207 -8.60378 -8.16472 -6.25072 0.78760 1.40466 1.42982 1.51012 1.71261 2.41363 3.15598 3.60695 3.70307 3.85307 4.04332 4.06354 4.14174 4.22752 4.27298 4.48993 4.51804 4.54296 4.65393 4.72673 4.82895 4.87928 4.90344 4.94862 5.05823 5.06756 5.09516 5.14818 5.21947 5.24852 5.27307 5.33989 5.45593 5.51634 5.69011 5.85894 6.17920 6.51042 6.84023 7.05877 7.44483 8.92427 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.027051 B = 0.004955 C = 0.004701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.829585 B = 5649.699428 C = 5954.763607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.083 4.083 3 S -0.304 6.304 4 C -0.035 4.035 5 H 0.078 0.922 6 C -0.099 4.099 7 C -0.112 4.112 8 C -0.143 4.143 9 C 0.091 3.909 10 H 0.060 0.940 11 N -0.679 5.679 12 C 0.216 3.784 13 H -0.022 1.022 14 C -0.108 4.108 15 C -0.535 4.535 16 H 0.056 0.944 17 C 0.018 3.982 18 N -0.918 5.918 19 Si 0.954 3.046 20 H -0.276 1.276 21 H -0.285 1.285 22 H -0.267 1.267 23 C -0.072 4.072 24 H 0.058 0.942 25 H 0.088 0.912 26 H 0.063 0.937 27 H 0.078 0.922 28 H 0.089 0.911 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.050 0.950 33 H 0.038 0.962 34 H 0.079 0.921 35 H 0.333 0.667 36 H 0.033 0.967 37 H 0.024 0.976 38 H 0.036 0.964 39 H 0.262 0.738 40 H 0.077 0.923 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.968 -3.171 7.910 18.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.231 4.231 3 S -0.074 6.074 4 C -0.163 4.163 5 H 0.096 0.904 6 C -0.138 4.138 7 C -0.151 4.151 8 C -0.182 4.182 9 C -0.022 4.022 10 H 0.078 0.922 11 N -0.312 5.312 12 C 0.108 3.892 13 H -0.004 1.004 14 C -0.167 4.167 15 C -0.573 4.573 16 H 0.074 0.926 17 C -0.182 4.182 18 N -0.557 5.557 19 Si 0.780 3.220 20 H -0.202 1.202 21 H -0.211 1.211 22 H -0.192 1.192 23 C -0.112 4.112 24 H 0.077 0.923 25 H 0.107 0.893 26 H 0.082 0.918 27 H 0.097 0.903 28 H 0.108 0.892 29 H 0.098 0.902 30 H 0.091 0.909 31 H 0.096 0.904 32 H 0.069 0.931 33 H 0.057 0.943 34 H 0.098 0.902 35 H 0.153 0.847 36 H 0.052 0.948 37 H 0.043 0.957 38 H 0.055 0.945 39 H 0.071 0.929 40 H 0.095 0.905 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -16.709 -1.762 7.397 18.358 hybrid contribution 2.167 -1.876 -0.094 2.868 sum -14.542 -3.638 7.303 16.674 Atomic orbital electron populations 1.21511 0.91205 1.03480 1.02813 1.23367 1.00815 0.93638 1.05275 1.86808 1.07039 1.15543 1.98060 1.23009 0.91211 1.00892 1.01211 0.90369 1.21775 0.95106 1.00867 0.96081 1.21486 0.95089 0.96545 1.02017 1.22101 0.99304 0.97893 0.98892 1.21524 0.94740 0.96651 0.89263 0.92220 1.60793 1.24445 1.09453 1.36478 1.18863 0.83939 0.93816 0.92614 1.00408 1.21501 0.99273 0.96809 0.99091 1.21511 0.94887 1.01745 1.39200 0.92625 1.25665 0.97009 0.98456 0.97044 1.70085 1.04909 1.35678 1.45024 0.85632 0.77149 0.79788 0.79430 1.20203 1.21076 1.19188 1.21225 0.93187 0.94651 1.02106 0.92319 0.89317 0.91753 0.90333 0.89196 0.90182 0.90943 0.90351 0.93135 0.94288 0.90226 0.84736 0.94783 0.95708 0.94467 0.92922 0.90461 0.92122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.96 9.92 71.98 0.71 -1.24 16 2 C -0.08 -1.54 6.36 71.98 0.46 -1.08 16 3 S -0.30 -7.49 21.15 -56.49 -1.19 -8.69 16 4 C -0.03 -0.92 2.41 30.59 0.07 -0.84 16 5 H 0.08 2.37 7.21 -2.39 -0.02 2.35 16 6 C -0.10 -2.27 5.11 30.59 0.16 -2.11 16 7 C -0.11 -2.99 5.67 30.60 0.17 -2.82 16 8 C -0.14 -4.43 5.50 30.60 0.17 -4.26 16 9 C 0.09 3.13 2.67 44.92 0.12 3.25 16 10 H 0.06 2.24 7.15 -2.38 -0.02 2.23 16 11 N -0.68 -28.12 5.57 -473.31 -2.63 -30.75 16 12 C 0.22 10.93 2.28 44.17 0.10 11.03 16 13 H -0.02 -1.22 7.06 -2.39 -0.02 -1.24 16 14 C -0.11 -5.37 9.26 71.98 0.67 -4.71 16 15 C -0.54 -29.27 8.48 25.60 0.22 -29.05 16 16 H 0.06 3.00 7.69 -2.91 -0.02 2.98 16 17 C 0.02 0.99 5.17 84.65 0.44 1.42 16 18 N -0.92 -53.29 12.16 21.45 0.26 -53.03 16 19 Si 0.95 43.51 29.55 68.60 2.03 45.54 16 20 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 21 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 22 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 23 C -0.07 -2.12 4.93 30.60 0.15 -1.97 16 24 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 27 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.09 1.48 7.14 -2.39 -0.02 1.47 16 29 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.07 1.46 6.92 -2.39 -0.02 1.44 16 31 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.05 1.55 6.26 -2.39 -0.01 1.53 16 33 H 0.04 1.44 7.43 -2.39 -0.02 1.42 16 34 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.33 13.57 5.09 -89.70 -0.46 13.11 16 36 H 0.03 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.02 1.10 7.48 -2.39 -0.02 1.08 16 38 H 0.04 2.00 6.83 -2.39 -0.02 1.98 16 39 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 40 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 41 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -59.09 323.47 2.42 -56.67 By element: Atomic # 1 Polarization: 22.13 SS G_CDS: 0.53 Total: 22.65 kcal Atomic # 6 Polarization: -35.83 SS G_CDS: 3.44 Total: -32.40 kcal Atomic # 7 Polarization: -81.41 SS G_CDS: -2.37 Total: -83.78 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Atomic # 16 Polarization: -7.49 SS G_CDS: -1.19 Total: -8.69 kcal Total: -59.09 2.42 -56.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309062269.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.354 kcal (2) G-P(sol) polarization free energy of solvation -59.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds