Wall clock time and date at job start Mon Mar 30 2020 06:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 S 1.81401 * 109.46970 * 2 1 4 4 C 1.81409 * 102.99785 * 180.02562 * 3 2 1 5 5 H 1.08993 * 109.47018 * 54.99656 * 4 3 2 6 6 C 1.52997 * 109.46869 * 294.99787 * 4 3 2 7 7 C 1.52996 * 109.47131 * 179.97438 * 6 4 3 8 8 C 1.53002 * 109.46972 * 60.00459 * 7 6 4 9 9 C 1.52997 * 109.46817 * 299.99733 * 8 7 6 10 10 H 1.09001 * 109.47502 * 300.00518 * 9 8 7 11 11 N 1.46902 * 109.47094 * 179.97438 * 9 8 7 12 12 C 1.46911 * 110.99614 * 85.00357 * 11 9 8 13 13 H 1.09003 * 109.46579 * 324.99845 * 12 11 9 14 14 C 1.52997 * 109.47257 * 84.99924 * 12 11 9 15 15 C 1.50698 * 109.46730 * 205.00037 * 12 11 9 16 16 H 1.08006 * 120.00278 * 359.97438 * 15 12 11 17 17 C 1.37880 * 119.99486 * 179.97438 * 15 12 11 18 18 N 1.31513 * 120.00268 * 0.02562 * 17 15 12 19 19 Si 1.86804 * 119.99538 * 180.02562 * 17 15 12 20 20 H 1.48499 * 109.47197 * 90.00153 * 19 17 15 21 21 H 1.48507 * 109.46924 * 209.99894 * 19 17 15 22 22 H 1.48493 * 109.47400 * 329.99858 * 19 17 15 23 23 C 1.52999 * 109.46821 * 175.00286 * 4 3 2 24 24 H 1.08999 * 109.47137 * 60.00046 * 1 2 3 25 25 H 1.08995 * 109.46825 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46589 * 300.00140 * 1 2 3 27 27 H 1.08999 * 109.46713 * 240.00361 * 2 1 3 28 28 H 1.08992 * 109.47275 * 120.00269 * 2 1 3 29 29 H 1.09001 * 109.47289 * 59.99966 * 6 4 3 30 30 H 1.09000 * 109.47611 * 300.00537 * 6 4 3 31 31 H 1.08996 * 109.47452 * 300.00000 * 7 6 4 32 32 H 1.09000 * 109.47054 * 180.02562 * 7 6 4 33 33 H 1.09002 * 109.47070 * 179.97438 * 8 7 6 34 34 H 1.08996 * 109.47407 * 59.99513 * 8 7 6 35 35 H 1.00897 * 111.00496 * 208.95166 * 11 9 8 36 36 H 1.08995 * 109.47175 * 179.97438 * 14 12 11 37 37 H 1.09002 * 109.47293 * 300.00271 * 14 12 11 38 38 H 1.09005 * 109.46824 * 59.99929 * 14 12 11 39 39 H 0.96999 * 119.99652 * 180.02562 * 18 17 15 40 40 H 1.08993 * 109.47839 * 59.99872 * 23 4 3 41 41 H 1.09000 * 109.47160 * 299.99434 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 6 3.9372 1.5058 -0.0008 5 1 4.2314 0.8793 -0.8427 6 6 4.3757 0.8424 1.3063 7 6 5.8959 0.6694 1.3054 8 6 6.5651 2.0395 1.1794 9 6 6.1265 2.7029 -0.1277 10 1 6.4203 2.0761 -0.9697 11 7 6.7685 4.0187 -0.2485 12 6 8.1106 3.8978 -0.8336 13 1 8.5731 2.9712 -0.4935 14 6 8.0023 3.8836 -2.3597 15 6 8.9545 5.0689 -0.4008 16 1 8.5357 5.8274 0.2441 17 6 10.2614 5.1721 -0.8281 18 7 10.7712 4.2489 -1.6137 19 14 11.3077 6.6234 -0.2910 20 1 12.0090 6.2868 0.9739 21 1 12.3079 6.9295 -1.3452 22 1 10.4382 7.8075 -0.0749 23 6 4.6058 2.8762 -0.1265 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3632 0.5139 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 3.8993 -0.1338 1.3960 30 1 4.0814 1.4689 2.1483 31 1 6.1898 0.0426 0.4635 32 1 6.2082 0.1964 2.2364 33 1 7.6481 1.9163 1.1792 34 1 6.2712 2.6663 2.0213 35 1 6.1958 4.6526 -0.7853 36 1 8.9980 3.7944 -2.7938 37 1 7.3918 3.0366 -2.6727 38 1 7.5397 4.8102 -2.6997 39 1 11.6907 4.3213 -1.9140 40 1 4.3116 3.5027 0.7154 41 1 4.2934 3.3488 -1.0577 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309062271.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:40 Heat of formation + Delta-G solvation = -47.125372 kcal Electronic energy + Delta-G solvation = -17548.415300 eV Core-core repulsion = 14973.335643 eV Total energy + Delta-G solvation = -2575.079656 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.89902 -36.96801 -34.36170 -33.64516 -31.84432 -31.39067 -28.17856 -27.22222 -24.76396 -23.54002 -23.02931 -21.71088 -20.78598 -18.39432 -17.35329 -16.77440 -16.49275 -15.93965 -15.81098 -15.58416 -15.17812 -15.07992 -14.61642 -14.32127 -13.76569 -13.52541 -13.26302 -13.18406 -12.96902 -12.86069 -12.66996 -12.50281 -12.42595 -12.25922 -12.15262 -12.06821 -11.97570 -11.57793 -11.41918 -11.12104 -10.93843 -10.61346 -10.47579 -8.96466 -8.66508 -8.09425 -6.20239 0.70248 1.42996 1.43292 1.54379 1.66082 2.44240 3.18950 3.41025 3.66165 3.91480 4.01249 4.05649 4.12658 4.20391 4.34587 4.42028 4.43388 4.49325 4.54568 4.63475 4.73029 4.86366 4.88063 4.92888 4.98499 5.03001 5.07521 5.10421 5.18760 5.24361 5.25167 5.36746 5.42186 5.52313 5.69730 5.84704 6.29072 6.66851 6.85307 6.95672 7.49837 8.96223 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.046066 B = 0.003984 C = 0.003898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.675489 B = 7026.154346 C = 7181.599786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.081 4.081 3 S -0.304 6.304 4 C -0.036 4.036 5 H 0.084 0.916 6 C -0.102 4.102 7 C -0.108 4.108 8 C -0.103 4.103 9 C 0.097 3.903 10 H 0.022 0.978 11 N -0.684 5.684 12 C 0.220 3.780 13 H 0.003 0.997 14 C -0.157 4.157 15 C -0.515 4.515 16 H 0.054 0.946 17 C 0.008 3.992 18 N -0.923 5.923 19 Si 0.960 3.040 20 H -0.278 1.278 21 H -0.283 1.283 22 H -0.269 1.269 23 C -0.087 4.087 24 H 0.058 0.942 25 H 0.090 0.910 26 H 0.061 0.939 27 H 0.084 0.916 28 H 0.091 0.909 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.060 0.940 32 H 0.081 0.919 33 H 0.036 0.964 34 H 0.062 0.938 35 H 0.330 0.670 36 H 0.062 0.938 37 H 0.022 0.978 38 H 0.031 0.969 39 H 0.261 0.739 40 H 0.072 0.928 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.258 -10.351 3.824 20.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.229 4.229 3 S -0.075 6.075 4 C -0.165 4.165 5 H 0.102 0.898 6 C -0.141 4.141 7 C -0.148 4.148 8 C -0.142 4.142 9 C -0.014 4.014 10 H 0.040 0.960 11 N -0.314 5.314 12 C 0.111 3.889 13 H 0.021 0.979 14 C -0.216 4.216 15 C -0.553 4.553 16 H 0.072 0.928 17 C -0.190 4.190 18 N -0.564 5.564 19 Si 0.786 3.214 20 H -0.203 1.203 21 H -0.209 1.209 22 H -0.194 1.194 23 C -0.126 4.126 24 H 0.077 0.923 25 H 0.109 0.891 26 H 0.080 0.920 27 H 0.103 0.897 28 H 0.110 0.890 29 H 0.099 0.901 30 H 0.092 0.908 31 H 0.079 0.921 32 H 0.099 0.901 33 H 0.055 0.945 34 H 0.081 0.919 35 H 0.147 0.853 36 H 0.080 0.920 37 H 0.041 0.959 38 H 0.050 0.950 39 H 0.070 0.930 40 H 0.091 0.909 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -17.518 -9.450 4.366 20.378 hybrid contribution 1.556 -0.425 -1.024 1.910 sum -15.962 -9.875 3.342 19.065 Atomic orbital electron populations 1.21523 0.91349 1.03566 1.02763 1.23392 1.00710 0.93230 1.05607 1.87031 1.06468 1.15947 1.98081 1.23027 0.91778 0.99887 1.01779 0.89771 1.21796 0.95588 1.00980 0.95736 1.21515 0.94706 0.95970 1.02606 1.21483 0.99019 0.96405 0.97252 1.21431 0.92540 0.90808 0.96671 0.95971 1.60736 1.04036 1.09805 1.56810 1.18912 0.85601 0.95270 0.89100 0.97860 1.22254 1.01321 0.97311 1.00735 1.21474 0.96578 1.08355 1.28924 0.92807 1.25715 0.99033 0.98942 0.95280 1.70009 1.15010 1.35633 1.35716 0.85530 0.78344 0.79797 0.77776 1.20340 1.20900 1.19394 1.21377 0.93253 0.95340 1.02600 0.92299 0.89113 0.92001 0.89720 0.89008 0.90149 0.90840 0.92143 0.90067 0.94469 0.91938 0.85269 0.91963 0.95895 0.95019 0.93039 0.90886 0.91918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.69 9.92 71.98 0.71 -0.98 16 2 C -0.08 -1.26 6.36 71.98 0.46 -0.80 16 3 S -0.30 -6.90 21.15 -56.49 -1.19 -8.10 16 4 C -0.04 -0.85 2.65 30.59 0.08 -0.77 16 5 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 6 C -0.10 -2.15 5.11 30.59 0.16 -1.99 16 7 C -0.11 -2.63 5.92 30.59 0.18 -2.45 16 8 C -0.10 -3.42 5.41 30.59 0.17 -3.25 16 9 C 0.10 3.42 2.31 44.93 0.10 3.53 16 10 H 0.02 0.84 7.12 -2.39 -0.02 0.83 16 11 N -0.68 -29.28 6.04 -473.19 -2.86 -32.13 16 12 C 0.22 11.28 2.38 44.17 0.11 11.38 16 13 H 0.00 0.20 7.11 -2.39 -0.02 0.18 16 14 C -0.16 -7.70 8.92 71.98 0.64 -7.06 16 15 C -0.51 -29.08 8.84 25.60 0.23 -28.85 16 16 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 17 C 0.01 0.46 5.30 84.66 0.45 0.91 16 18 N -0.92 -53.88 11.32 21.45 0.24 -53.63 16 19 Si 0.96 44.58 29.54 68.60 2.03 46.61 16 20 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 21 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 22 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 23 C -0.09 -2.51 4.48 30.61 0.14 -2.37 16 24 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 25 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.09 1.23 7.14 -2.39 -0.02 1.22 16 29 H 0.08 1.36 6.92 -2.39 -0.02 1.34 16 30 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.04 1.44 7.43 -2.39 -0.02 1.42 16 34 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.33 13.48 8.09 -89.70 -0.73 12.75 16 36 H 0.06 3.41 6.07 -2.39 -0.01 3.39 16 37 H 0.02 0.99 7.43 -2.39 -0.02 0.97 16 38 H 0.03 1.48 8.13 -2.38 -0.02 1.46 16 39 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 40 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 41 H 0.06 1.85 8.12 -2.39 -0.02 1.83 16 Total: -1.00 -60.77 328.07 1.89 -58.89 By element: Atomic # 1 Polarization: 20.82 SS G_CDS: 0.25 Total: 21.07 kcal Atomic # 6 Polarization: -36.13 SS G_CDS: 3.42 Total: -32.71 kcal Atomic # 7 Polarization: -83.15 SS G_CDS: -2.61 Total: -85.77 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Atomic # 16 Polarization: -6.90 SS G_CDS: -1.19 Total: -8.10 kcal Total: -60.77 1.89 -58.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309062271.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.761 kcal (2) G-P(sol) polarization free energy of solvation -60.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds