Wall clock time and date at job start Mon Mar 30 2020 06:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47397 * 2 1 4 4 C 1.52996 * 109.47406 * 239.99431 * 2 1 3 5 5 C 1.50701 * 109.46820 * 59.99928 * 4 2 1 6 6 H 1.08000 * 120.00070 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00019 * 179.97438 * 5 4 2 8 8 N 1.31518 * 119.99993 * 179.97438 * 7 5 4 9 9 Si 1.86805 * 120.00130 * 0.02562 * 7 5 4 10 10 H 1.48493 * 109.47108 * 89.99504 * 9 7 5 11 11 H 1.48498 * 109.47097 * 209.99712 * 9 7 5 12 12 H 1.48499 * 109.46508 * 329.99366 * 9 7 5 13 13 C 1.53004 * 109.46923 * 119.99895 * 2 1 3 14 14 N 1.46901 * 109.46916 * 299.99733 * 13 2 1 15 15 C 1.46905 * 110.99870 * 180.02562 * 14 13 2 16 16 C 1.52999 * 109.47094 * 274.99984 * 15 14 13 17 17 C 1.53002 * 109.47140 * 179.97438 * 16 15 14 18 18 C 1.53006 * 109.46736 * 60.00233 * 17 16 15 19 19 F 1.39904 * 109.46864 * 180.02562 * 18 17 16 20 20 C 1.52999 * 109.47116 * 299.99782 * 18 17 16 21 21 C 1.52999 * 109.46836 * 60.00281 * 20 18 17 22 22 H 1.09002 * 109.47301 * 300.00132 * 1 2 3 23 23 H 1.09001 * 109.47017 * 60.00685 * 1 2 3 24 24 H 1.09005 * 109.47249 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46999 * 179.97438 * 3 2 1 26 26 H 1.09001 * 109.46478 * 299.99645 * 3 2 1 27 27 H 1.08993 * 109.47197 * 59.99666 * 3 2 1 28 28 H 1.08993 * 109.47740 * 180.02562 * 4 2 1 29 29 H 1.09005 * 109.47573 * 300.00304 * 4 2 1 30 30 H 0.96999 * 120.00009 * 180.02562 * 8 7 5 31 31 H 1.09004 * 109.46889 * 180.02562 * 13 2 1 32 32 H 1.08995 * 109.47384 * 59.99754 * 13 2 1 33 33 H 1.00901 * 111.00067 * 303.95263 * 14 13 2 34 34 H 1.09004 * 109.46962 * 34.99990 * 15 14 13 35 35 H 1.08997 * 109.47624 * 300.00377 * 16 15 14 36 36 H 1.09006 * 109.47163 * 60.00429 * 16 15 14 37 37 H 1.09003 * 109.46910 * 300.00632 * 17 16 15 38 38 H 1.08997 * 109.47282 * 180.02562 * 17 16 15 39 39 H 1.08997 * 109.46798 * 60.00194 * 18 17 16 40 40 H 1.09004 * 109.47221 * 300.00437 * 20 18 17 41 41 H 1.08992 * 109.47148 * 180.02562 * 20 18 17 42 42 H 1.09009 * 109.47236 * 180.02562 * 21 20 18 43 43 H 1.08998 * 109.47496 * 59.99960 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.5377 -0.0110 -2.4796 6 1 0.9171 0.8673 -2.3806 7 6 1.8712 -0.4818 -3.7319 8 7 1.4324 0.1378 -4.8058 9 14 2.9453 -2.0006 -3.9032 10 1 2.0867 -3.2114 -3.9491 11 1 3.7376 -1.9078 -5.1557 12 1 3.8653 -2.0898 -2.7410 13 6 2.0399 -0.7213 1.2493 14 7 1.5503 -0.0286 2.4487 15 6 2.0218 -0.6944 3.6704 16 6 1.0728 -1.8409 4.0251 17 6 1.5642 -2.5347 5.2972 18 6 1.5981 -1.5263 6.4474 19 9 2.0479 -2.1605 7.6104 20 6 2.5471 -0.3798 6.0927 21 6 2.0556 0.3139 4.8206 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3634 -1.0277 0.0005 25 1 3.1301 1.4424 0.0005 26 1 1.6767 1.9562 -0.8901 27 1 1.6767 1.9563 0.8899 28 1 3.1300 -0.7218 -1.2489 29 1 1.6767 -1.7491 -1.2491 30 1 1.6668 -0.1937 -5.6867 31 1 3.1300 -0.7209 1.2495 32 1 1.6766 -1.7489 1.2494 33 1 1.8198 0.9437 2.4401 34 1 3.0238 -1.0902 3.5049 35 1 0.0707 -1.4453 4.1905 36 1 1.0489 -2.5596 3.2058 37 1 2.5662 -2.9304 5.1312 38 1 0.8884 -3.3518 5.5496 39 1 0.5961 -1.1306 6.6132 40 1 3.5490 -0.7756 5.9268 41 1 2.5716 0.3383 6.9122 42 1 2.7320 1.1305 4.5676 43 1 1.0537 0.7097 4.9865 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309332391.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:09 Heat of formation + Delta-G solvation = -88.030882 kcal Electronic energy + Delta-G solvation = -19916.877784 eV Core-core repulsion = 16909.644250 eV Total energy + Delta-G solvation = -3007.233534 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.185 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -47.81992 -38.96235 -37.07008 -33.65848 -32.07802 -31.15809 -28.69104 -27.37932 -26.38819 -25.02458 -23.09398 -22.34924 -21.33940 -20.17894 -17.86373 -16.80138 -16.44519 -16.07120 -15.61881 -15.22653 -14.85844 -14.17263 -13.99357 -13.81222 -13.44554 -13.37297 -12.92404 -12.63053 -12.52643 -12.31244 -12.01100 -11.72538 -11.50748 -11.37604 -11.27180 -11.00970 -10.96137 -10.83909 -10.58690 -10.50310 -10.34800 -10.19969 -9.78827 -9.68700 -9.28094 -8.90025 -8.49936 -8.18968 -6.00239 -3.96394 3.31853 3.39554 3.42719 4.08829 4.26819 4.29686 4.48001 4.50228 4.78576 4.83805 4.98044 5.10323 5.19118 5.29282 5.32835 5.45262 5.56523 5.61067 5.66721 5.73900 5.83243 5.86899 5.88250 5.91983 6.03405 6.15943 6.22678 6.25674 6.42369 6.58821 6.69299 6.79342 7.07341 7.13151 7.19574 7.29988 7.32840 7.45882 7.62356 7.85325 8.59629 9.05708 9.62960 11.12891 Molecular weight = 257.19amu Principal moments of inertia in cm(-1) A = 0.038641 B = 0.003982 C = 0.003808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.449080 B = 7029.562694 C = 7350.502973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.049 4.049 3 C -0.130 4.130 4 C -0.004 4.004 5 C -0.507 4.507 6 H 0.078 0.922 7 C 0.064 3.936 8 N -0.906 5.906 9 Si 0.875 3.125 10 H -0.278 1.278 11 H -0.290 1.290 12 H -0.267 1.267 13 C 0.068 3.932 14 N -0.682 5.682 15 C 0.083 3.917 16 C -0.104 4.104 17 C -0.145 4.145 18 C 0.090 3.910 19 F -0.219 7.219 20 C -0.141 4.141 21 C -0.118 4.118 22 H 0.044 0.956 23 H 0.059 0.941 24 H 0.038 0.962 25 H 0.039 0.961 26 H 0.069 0.931 27 H 0.035 0.965 28 H 0.012 0.988 29 H 0.010 0.990 30 H 0.261 0.739 31 H 0.022 0.978 32 H 0.065 0.935 33 H 0.341 0.659 34 H 0.042 0.958 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.083 0.917 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.068 0.932 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.161 -1.685 21.110 21.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.050 4.050 3 C -0.188 4.188 4 C -0.042 4.042 5 C -0.545 4.545 6 H 0.096 0.904 7 C -0.136 4.136 8 N -0.545 5.545 9 Si 0.703 3.297 10 H -0.204 1.204 11 H -0.216 1.216 12 H -0.192 1.192 13 C -0.061 4.061 14 N -0.314 5.314 15 C -0.027 4.027 16 C -0.142 4.142 17 C -0.183 4.183 18 C 0.054 3.946 19 F -0.200 7.200 20 C -0.179 4.179 21 C -0.156 4.156 22 H 0.064 0.936 23 H 0.078 0.922 24 H 0.057 0.943 25 H 0.058 0.942 26 H 0.088 0.912 27 H 0.054 0.946 28 H 0.030 0.970 29 H 0.028 0.972 30 H 0.071 0.929 31 H 0.040 0.960 32 H 0.084 0.916 33 H 0.161 0.839 34 H 0.060 0.940 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.101 0.899 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.087 0.913 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.576 -2.022 20.934 21.039 hybrid contribution 1.621 -0.696 -0.260 1.783 sum 2.198 -2.717 20.674 20.968 Atomic orbital electron populations 1.21610 0.94518 1.00624 1.00693 1.20422 0.96209 0.95043 0.93280 1.21776 0.99557 0.96480 1.00949 1.19626 0.95776 0.95449 0.93365 1.21140 1.31423 1.13234 0.88690 0.90419 1.25019 0.95809 0.96729 0.96033 1.69910 1.46149 1.40655 0.97827 0.86849 0.81296 0.84075 0.77451 1.20431 1.21571 1.19220 1.22180 0.96133 0.98169 0.89589 1.60557 1.63731 1.06299 1.00812 1.21549 0.96554 0.94519 0.90091 1.21458 0.99734 0.97165 0.95893 1.22138 1.03051 0.98201 0.94898 1.21649 0.98591 0.92857 0.81507 1.92799 1.91341 1.84181 1.51676 1.22075 0.99738 0.97446 0.98686 1.21652 1.02426 0.97903 0.93625 0.93650 0.92177 0.94276 0.94196 0.91166 0.94570 0.97002 0.97203 0.92892 0.95960 0.91621 0.83948 0.94013 0.90851 0.91105 0.91013 0.90748 0.89852 0.90885 0.90753 0.91330 0.90611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.20 8.06 37.16 0.30 -1.90 16 2 C -0.05 -0.93 0.60 -154.51 -0.09 -1.02 16 3 C -0.13 -2.34 7.89 37.16 0.29 -2.04 16 4 C 0.00 -0.10 3.11 -27.88 -0.09 -0.19 16 5 C -0.51 -13.91 8.20 -34.44 -0.28 -14.19 16 6 H 0.08 2.27 5.92 -52.49 -0.31 1.96 16 7 C 0.06 1.86 5.47 -17.82 -0.10 1.76 16 8 N -0.91 -27.70 13.96 55.43 0.77 -26.93 16 9 Si 0.88 21.72 27.47 -169.99 -4.67 17.05 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 13 C 0.07 1.07 4.45 -3.82 -0.02 1.06 16 14 N -0.68 -8.83 5.52 -106.72 -0.59 -9.42 16 15 C 0.08 0.89 2.49 -67.71 -0.17 0.72 16 16 C -0.10 -1.07 5.42 -26.73 -0.15 -1.21 16 17 C -0.14 -1.31 5.66 -26.73 -0.15 -1.46 16 18 C 0.09 0.80 3.88 -26.73 -0.10 0.70 16 19 F -0.22 -2.43 17.08 2.25 0.04 -2.39 16 20 C -0.14 -1.17 5.66 -26.73 -0.15 -1.32 16 21 C -0.12 -1.03 5.19 -26.73 -0.14 -1.17 16 22 H 0.04 0.76 7.60 -51.93 -0.39 0.36 16 23 H 0.06 1.26 6.62 -51.93 -0.34 0.92 16 24 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 25 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.07 1.44 6.62 -51.93 -0.34 1.09 16 27 H 0.04 0.54 6.57 -51.93 -0.34 0.20 16 28 H 0.01 0.28 7.20 -51.93 -0.37 -0.09 16 29 H 0.01 0.23 7.57 -51.93 -0.39 -0.16 16 30 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 31 H 0.02 0.36 8.05 -51.93 -0.42 -0.06 16 32 H 0.07 1.06 7.44 -51.93 -0.39 0.67 16 33 H 0.34 4.25 6.39 -39.29 -0.25 3.99 16 34 H 0.04 0.48 7.80 -51.93 -0.40 0.08 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.80 7.45 -51.93 -0.39 0.42 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.07 0.57 8.12 -51.92 -0.42 0.15 16 43 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 325.81 15.07 4.91 4.91 Total: -1.00 -29.23 325.81 -8.12 -37.35 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -7.74 Total: -0.31 kcal Atomic # 6 Polarization: -19.42 SS G_CDS: -0.84 Total: -20.27 kcal Atomic # 7 Polarization: -36.53 SS G_CDS: 0.18 Total: -36.35 kcal Atomic # 9 Polarization: -2.43 SS G_CDS: 0.04 Total: -2.39 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.67 Total: 17.05 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.23 -8.12 -37.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309332391.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.681 kcal (2) G-P(sol) polarization free energy of solvation -29.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds