Wall clock time and date at job start Mon Mar 30 2020 06:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47397 * 2 1 4 4 C 1.52996 * 109.47406 * 239.99431 * 2 1 3 5 5 C 1.50701 * 109.46820 * 59.99928 * 4 2 1 6 6 H 1.08000 * 120.00070 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00019 * 179.97438 * 5 4 2 8 8 N 1.31518 * 119.99993 * 179.97438 * 7 5 4 9 9 Si 1.86805 * 120.00130 * 0.02562 * 7 5 4 10 10 H 1.48493 * 109.47108 * 89.99504 * 9 7 5 11 11 H 1.48498 * 109.47097 * 209.99712 * 9 7 5 12 12 H 1.48499 * 109.46508 * 329.99366 * 9 7 5 13 13 C 1.53004 * 109.46923 * 119.99895 * 2 1 3 14 14 N 1.46901 * 109.46916 * 299.99733 * 13 2 1 15 15 C 1.46905 * 110.99870 * 180.02562 * 14 13 2 16 16 C 1.52999 * 109.47094 * 274.99984 * 15 14 13 17 17 C 1.53002 * 109.47140 * 179.97438 * 16 15 14 18 18 C 1.53006 * 109.46736 * 60.00233 * 17 16 15 19 19 F 1.39904 * 109.46864 * 180.02562 * 18 17 16 20 20 C 1.52999 * 109.47116 * 299.99782 * 18 17 16 21 21 C 1.52999 * 109.46836 * 60.00281 * 20 18 17 22 22 H 1.09002 * 109.47301 * 300.00132 * 1 2 3 23 23 H 1.09001 * 109.47017 * 60.00685 * 1 2 3 24 24 H 1.09005 * 109.47249 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46999 * 179.97438 * 3 2 1 26 26 H 1.09001 * 109.46478 * 299.99645 * 3 2 1 27 27 H 1.08993 * 109.47197 * 59.99666 * 3 2 1 28 28 H 1.08993 * 109.47740 * 180.02562 * 4 2 1 29 29 H 1.09005 * 109.47573 * 300.00304 * 4 2 1 30 30 H 0.96999 * 120.00009 * 180.02562 * 8 7 5 31 31 H 1.09004 * 109.46889 * 180.02562 * 13 2 1 32 32 H 1.08995 * 109.47384 * 59.99754 * 13 2 1 33 33 H 1.00901 * 111.00067 * 303.95263 * 14 13 2 34 34 H 1.09004 * 109.46962 * 34.99990 * 15 14 13 35 35 H 1.08997 * 109.47624 * 300.00377 * 16 15 14 36 36 H 1.09006 * 109.47163 * 60.00429 * 16 15 14 37 37 H 1.09003 * 109.46910 * 300.00632 * 17 16 15 38 38 H 1.08997 * 109.47282 * 180.02562 * 17 16 15 39 39 H 1.08997 * 109.46798 * 60.00194 * 18 17 16 40 40 H 1.09004 * 109.47221 * 300.00437 * 20 18 17 41 41 H 1.08992 * 109.47148 * 180.02562 * 20 18 17 42 42 H 1.09009 * 109.47236 * 180.02562 * 21 20 18 43 43 H 1.08998 * 109.47496 * 59.99960 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.5377 -0.0110 -2.4796 6 1 0.9171 0.8673 -2.3806 7 6 1.8712 -0.4818 -3.7319 8 7 1.4324 0.1378 -4.8058 9 14 2.9453 -2.0006 -3.9032 10 1 2.0867 -3.2114 -3.9491 11 1 3.7376 -1.9078 -5.1557 12 1 3.8653 -2.0898 -2.7410 13 6 2.0399 -0.7213 1.2493 14 7 1.5503 -0.0286 2.4487 15 6 2.0218 -0.6944 3.6704 16 6 1.0728 -1.8409 4.0251 17 6 1.5642 -2.5347 5.2972 18 6 1.5981 -1.5263 6.4474 19 9 2.0479 -2.1605 7.6104 20 6 2.5471 -0.3798 6.0927 21 6 2.0556 0.3139 4.8206 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3634 -1.0277 0.0005 25 1 3.1301 1.4424 0.0005 26 1 1.6767 1.9562 -0.8901 27 1 1.6767 1.9563 0.8899 28 1 3.1300 -0.7218 -1.2489 29 1 1.6767 -1.7491 -1.2491 30 1 1.6668 -0.1937 -5.6867 31 1 3.1300 -0.7209 1.2495 32 1 1.6766 -1.7489 1.2494 33 1 1.8198 0.9437 2.4401 34 1 3.0238 -1.0902 3.5049 35 1 0.0707 -1.4453 4.1905 36 1 1.0489 -2.5596 3.2058 37 1 2.5662 -2.9304 5.1312 38 1 0.8884 -3.3518 5.5496 39 1 0.5961 -1.1306 6.6132 40 1 3.5490 -0.7756 5.9268 41 1 2.5716 0.3383 6.9122 42 1 2.7320 1.1305 4.5676 43 1 1.0537 0.7097 4.9865 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309332391.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:08 Heat of formation + Delta-G solvation = -104.601916 kcal Electronic energy + Delta-G solvation = -19917.596358 eV Core-core repulsion = 16909.644250 eV Total energy + Delta-G solvation = -3007.952108 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.185 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.58971 -39.94674 -38.37741 -35.07956 -33.89860 -31.86685 -30.07981 -28.87442 -27.90442 -26.37995 -24.14939 -23.63044 -22.36945 -20.94942 -19.40871 -18.86511 -17.23003 -16.90082 -16.61202 -16.38083 -15.95483 -15.74924 -15.35595 -15.08672 -14.68403 -14.38970 -14.18765 -14.09489 -13.84644 -13.44723 -13.21608 -12.85048 -12.82887 -12.60365 -12.43271 -12.34340 -12.23525 -12.07971 -12.03264 -11.90642 -11.68847 -11.38934 -11.26052 -11.04744 -10.86056 -10.76387 -10.69976 -9.24757 -8.21796 -6.21928 1.35473 1.36864 1.47743 2.39197 3.13282 3.16587 3.57629 3.58285 3.77908 4.05261 4.11308 4.12966 4.17518 4.28464 4.34346 4.40589 4.50202 4.51187 4.73586 4.75182 4.81587 4.90199 4.98431 5.04087 5.06133 5.08976 5.15217 5.16761 5.18879 5.20578 5.31265 5.38359 5.45205 5.47208 5.54692 5.63748 5.77644 5.83682 6.19433 6.42579 6.59721 6.85624 7.40628 8.94455 Molecular weight = 257.19amu Principal moments of inertia in cm(-1) A = 0.038641 B = 0.003982 C = 0.003808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.449080 B = 7029.562694 C = 7350.502973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.049 4.049 3 C -0.124 4.124 4 C -0.003 4.003 5 C -0.503 4.503 6 H 0.045 0.955 7 C 0.001 3.999 8 N -0.955 5.955 9 Si 0.940 3.060 10 H -0.271 1.271 11 H -0.288 1.288 12 H -0.250 1.250 13 C 0.082 3.918 14 N -0.681 5.681 15 C 0.082 3.918 16 C -0.100 4.100 17 C -0.140 4.140 18 C 0.087 3.913 19 F -0.232 7.232 20 C -0.137 4.137 21 C -0.111 4.111 22 H 0.068 0.932 23 H 0.026 0.974 24 H 0.036 0.964 25 H 0.042 0.958 26 H 0.035 0.965 27 H 0.069 0.931 28 H 0.011 0.989 29 H 0.010 0.990 30 H 0.262 0.738 31 H 0.023 0.977 32 H 0.063 0.937 33 H 0.346 0.654 34 H 0.037 0.963 35 H 0.074 0.926 36 H 0.057 0.943 37 H 0.067 0.933 38 H 0.079 0.921 39 H 0.097 0.903 40 H 0.069 0.931 41 H 0.086 0.914 42 H 0.076 0.924 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.913 -2.362 23.501 23.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.050 4.050 3 C -0.181 4.181 4 C -0.041 4.041 5 C -0.541 4.541 6 H 0.063 0.937 7 C -0.195 4.195 8 N -0.597 5.597 9 Si 0.765 3.235 10 H -0.196 1.196 11 H -0.214 1.214 12 H -0.174 1.174 13 C -0.048 4.048 14 N -0.313 5.313 15 C -0.027 4.027 16 C -0.138 4.138 17 C -0.178 4.178 18 C 0.051 3.949 19 F -0.213 7.213 20 C -0.175 4.175 21 C -0.149 4.149 22 H 0.087 0.913 23 H 0.045 0.955 24 H 0.055 0.945 25 H 0.062 0.938 26 H 0.054 0.946 27 H 0.087 0.913 28 H 0.030 0.970 29 H 0.028 0.972 30 H 0.071 0.929 31 H 0.041 0.959 32 H 0.082 0.918 33 H 0.166 0.834 34 H 0.055 0.945 35 H 0.093 0.907 36 H 0.076 0.924 37 H 0.086 0.914 38 H 0.097 0.903 39 H 0.115 0.885 40 H 0.088 0.912 41 H 0.104 0.896 42 H 0.094 0.906 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.330 -2.698 23.355 23.548 hybrid contribution 1.323 -0.420 -0.975 1.696 sum 2.653 -3.118 22.380 22.752 Atomic orbital electron populations 1.21505 0.94573 1.00296 1.00142 1.20361 0.96109 0.95449 0.93048 1.21689 0.99705 0.95864 1.00863 1.19601 0.95542 0.95358 0.93635 1.21441 1.30036 1.12158 0.90479 0.93680 1.25918 0.97599 1.00162 0.95793 1.70064 1.48314 1.42852 0.98443 0.85810 0.79723 0.80100 0.77898 1.19636 1.21438 1.17389 1.21882 0.95988 0.97733 0.89159 1.60495 1.63722 1.06520 1.00571 1.21614 0.96257 0.95103 0.89745 1.21399 0.99748 0.96747 0.95951 1.22078 1.02905 0.98359 0.94472 1.21784 0.99472 0.92852 0.80810 1.92776 1.91550 1.84503 1.52428 1.22037 0.99299 0.97368 0.98790 1.21587 1.03043 0.97437 0.92788 0.91272 0.95500 0.94469 0.93838 0.94615 0.91263 0.97041 0.97189 0.92903 0.95854 0.91838 0.83400 0.94511 0.90705 0.92375 0.91388 0.90274 0.88530 0.91216 0.89583 0.90562 0.90035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.98 8.06 71.98 0.58 -3.40 16 2 C -0.05 -1.80 0.60 -52.18 -0.03 -1.83 16 3 C -0.12 -4.32 7.89 71.98 0.57 -3.75 16 4 C 0.00 -0.16 3.11 29.85 0.09 -0.07 16 5 C -0.50 -28.21 8.20 25.60 0.21 -28.00 16 6 H 0.05 2.77 5.92 -2.91 -0.02 2.75 16 7 C 0.00 0.05 5.47 84.65 0.46 0.52 16 8 N -0.95 -60.10 13.96 21.45 0.30 -59.80 16 9 Si 0.94 44.76 27.47 68.60 1.88 46.65 16 10 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 11 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 12 H -0.25 -11.11 6.54 99.48 0.65 -10.46 16 13 C 0.08 2.39 4.45 86.30 0.38 2.78 16 14 N -0.68 -15.68 5.52 -491.55 -2.71 -18.40 16 15 C 0.08 1.55 2.49 44.91 0.11 1.66 16 16 C -0.10 -1.82 5.42 30.59 0.17 -1.65 16 17 C -0.14 -2.23 5.66 30.60 0.17 -2.06 16 18 C 0.09 1.33 3.88 30.60 0.12 1.45 16 19 F -0.23 -4.65 17.08 44.97 0.77 -3.89 16 20 C -0.14 -1.86 5.66 30.59 0.17 -1.69 16 21 C -0.11 -1.57 5.19 30.59 0.16 -1.41 16 22 H 0.07 2.20 7.60 -2.39 -0.02 2.18 16 23 H 0.03 1.14 6.62 -2.39 -0.02 1.12 16 24 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16 25 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.03 1.47 6.62 -2.39 -0.02 1.46 16 27 H 0.07 1.93 6.57 -2.39 -0.02 1.91 16 28 H 0.01 0.52 7.20 -2.39 -0.02 0.50 16 29 H 0.01 0.45 7.57 -2.38 -0.02 0.43 16 30 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 31 H 0.02 0.69 8.05 -2.39 -0.02 0.67 16 32 H 0.06 1.91 7.44 -2.39 -0.02 1.89 16 33 H 0.35 7.43 6.39 -89.69 -0.57 6.86 16 34 H 0.04 0.75 7.80 -2.38 -0.02 0.73 16 35 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.06 1.21 7.45 -2.38 -0.02 1.19 16 37 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 41 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.08 1.00 8.12 -2.38 -0.02 0.98 16 43 H 0.08 1.10 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -63.68 325.81 3.74 -59.93 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: 0.34 Total: 12.98 kcal Atomic # 6 Polarization: -40.65 SS G_CDS: 3.17 Total: -37.48 kcal Atomic # 7 Polarization: -75.78 SS G_CDS: -2.41 Total: -78.20 kcal Atomic # 9 Polarization: -4.65 SS G_CDS: 0.77 Total: -3.89 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 1.88 Total: 46.65 kcal Total: -63.68 3.74 -59.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309332391.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.669 kcal (2) G-P(sol) polarization free energy of solvation -63.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds