Wall clock time and date at job start Mon Mar 30 2020 06:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47451 * 2 1 4 4 C 1.53006 * 109.46699 * 239.99896 * 2 1 3 5 5 C 1.50703 * 109.46809 * 60.00332 * 4 2 1 6 6 H 1.07999 * 120.00364 * 359.97438 * 5 4 2 7 7 C 1.37875 * 119.99618 * 179.97438 * 5 4 2 8 8 N 1.31516 * 120.00323 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99863 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47021 * 90.00187 * 9 7 5 11 11 H 1.48501 * 109.47644 * 210.00201 * 9 7 5 12 12 H 1.48503 * 109.47392 * 330.00376 * 9 7 5 13 13 C 1.53002 * 109.47156 * 120.00418 * 2 1 3 14 14 N 1.46895 * 109.46887 * 299.99363 * 13 2 1 15 15 C 1.46908 * 110.99725 * 180.02562 * 14 13 2 16 16 C 1.53008 * 109.46829 * 180.02562 * 15 14 13 17 17 C 1.52994 * 109.46835 * 180.02562 * 16 15 14 18 18 F 1.39901 * 112.90952 * 311.25060 * 17 16 15 19 19 C 1.53784 * 113.61233 * 179.97438 * 17 16 15 20 20 C 1.53787 * 87.07923 * 220.01769 * 19 17 16 21 21 C 1.53779 * 113.61529 * 82.50384 * 17 16 15 22 22 H 1.09007 * 109.46854 * 299.99467 * 1 2 3 23 23 H 1.08999 * 109.47527 * 59.99732 * 1 2 3 24 24 H 1.09007 * 109.47305 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47124 * 180.02562 * 3 2 1 26 26 H 1.08999 * 109.46974 * 300.00606 * 3 2 1 27 27 H 1.08997 * 109.47187 * 60.00270 * 3 2 1 28 28 H 1.08998 * 109.46658 * 180.02562 * 4 2 1 29 29 H 1.08998 * 109.47270 * 300.00060 * 4 2 1 30 30 H 0.97001 * 120.00251 * 179.97438 * 8 7 5 31 31 H 1.09001 * 109.47021 * 179.97438 * 13 2 1 32 32 H 1.08998 * 109.47408 * 59.99575 * 13 2 1 33 33 H 1.00907 * 110.99966 * 56.05360 * 14 13 2 34 34 H 1.09000 * 109.46747 * 60.00695 * 15 14 13 35 35 H 1.08997 * 109.47455 * 299.99920 * 15 14 13 36 36 H 1.08997 * 109.47160 * 60.00145 * 16 15 14 37 37 H 1.08997 * 109.46852 * 300.00063 * 16 15 14 38 38 H 1.09004 * 113.61451 * 105.47254 * 19 17 16 39 39 H 1.08994 * 113.61477 * 334.56556 * 19 17 16 40 40 H 1.08997 * 113.61028 * 139.98291 * 20 19 17 41 41 H 1.09000 * 113.61529 * 270.88430 * 20 19 17 42 42 H 1.09006 * 113.61307 * 25.43275 * 21 17 16 43 43 H 1.08999 * 113.69146 * 254.53761 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.5375 -0.0108 -2.4797 6 1 0.9164 0.8671 -2.3806 7 6 1.8710 -0.4816 -3.7320 8 7 2.6270 -1.5509 -3.8527 9 14 1.2477 0.3986 -5.2571 10 1 2.2253 1.4410 -5.6612 11 1 1.0833 -0.5805 -6.3615 12 1 -0.0608 1.0354 -4.9613 13 6 2.0400 -0.7213 1.2492 14 7 1.5505 -0.0288 2.4486 15 6 2.0220 -0.6947 3.6703 16 6 1.4925 0.0532 4.8956 17 6 1.9841 -0.6399 6.1678 18 9 1.7770 -2.0234 6.1491 19 6 1.5053 0.0376 7.4627 20 6 2.9083 -0.2343 8.0307 21 6 3.4102 -0.2361 6.5776 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 3.1301 1.4423 -0.0005 26 1 1.6767 1.9563 -0.8899 27 1 1.6768 1.9562 0.8900 28 1 3.1299 -0.7217 -1.2491 29 1 1.6765 -1.7489 -1.2493 30 1 2.8613 -1.8823 -4.7337 31 1 3.1300 -0.7217 1.2490 32 1 1.6766 -1.7490 1.2492 33 1 0.5439 0.0412 2.4402 34 1 3.1119 -0.6941 3.6868 35 1 1.6589 -1.7223 3.6873 36 1 0.4026 0.0523 4.8788 37 1 1.8553 1.0809 4.8787 38 1 0.7135 -0.5093 7.9746 39 1 1.2803 1.0974 7.3435 40 1 3.3041 0.5869 8.6282 41 1 2.9992 -1.2013 8.5256 42 1 3.7058 0.7491 6.2166 43 1 4.1579 -1.0029 6.3751 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309709112.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:15 Heat of formation + Delta-G solvation = -57.558757 kcal Electronic energy + Delta-G solvation = -19489.444221 eV Core-core repulsion = 16483.532058 eV Total energy + Delta-G solvation = -3005.912163 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.185 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -47.84183 -38.46561 -37.58536 -34.75019 -32.33661 -30.36277 -26.95798 -26.31026 -26.22969 -25.62047 -23.95379 -22.19145 -21.48627 -19.80830 -17.84311 -16.33512 -16.28557 -16.10312 -15.43492 -15.37764 -14.70434 -14.39497 -14.06400 -13.70012 -13.60309 -13.11763 -12.88230 -12.58789 -12.44539 -12.15485 -11.97029 -11.74442 -11.48180 -11.31824 -11.23906 -10.93770 -10.82180 -10.73946 -10.47474 -10.38526 -10.33808 -10.20428 -10.06000 -9.65533 -8.98901 -8.80286 -8.29716 -8.06986 -5.94175 -3.94318 3.34702 3.41160 3.43878 3.92876 3.99283 4.22540 4.37314 4.41346 4.50429 4.75275 5.12448 5.17887 5.32477 5.35739 5.36928 5.41557 5.52866 5.58117 5.64610 5.72162 5.72813 5.81962 5.96207 5.97965 6.05468 6.22280 6.29824 6.36543 6.53869 6.68369 6.81441 6.85122 7.23419 7.24588 7.28329 7.42239 7.69252 7.73851 7.88444 8.06295 8.50675 9.11148 9.68370 11.17551 Molecular weight = 257.19amu Principal moments of inertia in cm(-1) A = 0.053903 B = 0.003278 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.323384 B = 8540.369995 C = 8647.964277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.059 4.059 3 C -0.115 4.115 4 C 0.033 3.967 5 C -0.506 4.506 6 H 0.059 0.941 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.888 3.112 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.275 1.275 13 C 0.070 3.930 14 N -0.687 5.687 15 C 0.057 3.943 16 C -0.125 4.125 17 C 0.093 3.907 18 F -0.192 7.192 19 C -0.156 4.156 20 C -0.143 4.143 21 C -0.155 4.155 22 H 0.033 0.967 23 H 0.064 0.936 24 H 0.040 0.960 25 H 0.039 0.961 26 H 0.054 0.946 27 H 0.042 0.958 28 H 0.015 0.985 29 H 0.012 0.988 30 H 0.259 0.741 31 H 0.065 0.935 32 H 0.023 0.977 33 H 0.337 0.663 34 H 0.070 0.930 35 H 0.030 0.970 36 H 0.071 0.929 37 H 0.090 0.910 38 H 0.077 0.923 39 H 0.099 0.901 40 H 0.074 0.926 41 H 0.083 0.917 42 H 0.100 0.900 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.293 3.621 21.684 22.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.060 4.060 3 C -0.173 4.173 4 C -0.004 4.004 5 C -0.545 4.545 6 H 0.077 0.923 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.716 3.284 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.199 1.199 13 C -0.059 4.059 14 N -0.319 5.319 15 C -0.072 4.072 16 C -0.163 4.163 17 C 0.074 3.926 18 F -0.173 7.173 19 C -0.193 4.193 20 C -0.180 4.180 21 C -0.193 4.193 22 H 0.052 0.948 23 H 0.083 0.917 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.073 0.927 27 H 0.061 0.939 28 H 0.033 0.967 29 H 0.031 0.969 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.041 0.959 33 H 0.156 0.844 34 H 0.089 0.911 35 H 0.048 0.952 36 H 0.089 0.911 37 H 0.109 0.891 38 H 0.096 0.904 39 H 0.117 0.883 40 H 0.093 0.907 41 H 0.102 0.898 42 H 0.118 0.882 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.711 3.924 21.545 21.911 hybrid contribution -0.812 -0.650 -0.963 1.418 sum -1.524 3.274 20.582 20.897 Atomic orbital electron populations 1.21770 0.96094 1.00364 1.00381 1.20637 0.94738 0.96141 0.94435 1.21591 0.99745 0.95807 1.00120 1.19125 0.96105 0.94990 0.90180 1.21242 1.30732 1.11877 0.90619 0.92286 1.25021 0.95444 0.95114 0.99058 1.69969 1.37366 1.23185 1.23268 0.86662 0.79227 0.79412 0.83098 1.20784 1.21404 1.19946 1.22105 0.99763 0.94717 0.89290 1.60589 1.16231 1.53779 1.01256 1.21852 1.00518 0.95452 0.89408 1.21981 1.01573 1.00501 0.92238 1.21860 0.97898 0.76594 0.96215 1.92832 1.95812 1.31110 1.97504 1.23553 0.98175 1.02011 0.95599 1.22853 0.96060 1.02513 0.96562 1.23563 0.95985 1.03398 0.96347 0.94828 0.91708 0.94122 0.94206 0.92720 0.93914 0.96697 0.96926 0.93173 0.91612 0.95872 0.84410 0.91132 0.95164 0.91071 0.89106 0.90426 0.88286 0.90693 0.89846 0.88158 0.90296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.43 7.89 37.16 0.29 -2.13 16 2 C -0.06 -1.20 0.60 -154.51 -0.09 -1.29 16 3 C -0.12 -2.25 8.06 37.15 0.30 -1.95 16 4 C 0.03 0.86 4.04 -27.88 -0.11 0.74 16 5 C -0.51 -13.98 7.65 -34.44 -0.26 -14.24 16 6 H 0.06 1.58 5.68 -52.49 -0.30 1.28 16 7 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -27.11 13.29 55.43 0.74 -26.38 16 9 Si 0.89 21.74 29.54 -169.99 -5.02 16.71 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 13 C 0.07 1.25 4.65 -3.83 -0.02 1.23 16 14 N -0.69 -10.14 5.71 -113.77 -0.65 -10.79 16 15 C 0.06 0.74 5.48 -3.82 -0.02 0.72 16 16 C -0.12 -1.27 5.20 -26.73 -0.14 -1.41 16 17 C 0.09 0.91 1.62 -89.81 -0.15 0.76 16 18 F -0.19 -2.40 16.54 2.25 0.04 -2.37 16 19 C -0.16 -1.19 7.54 -25.91 -0.20 -1.38 16 20 C -0.14 -1.03 8.06 -25.94 -0.21 -1.24 16 21 C -0.16 -1.29 7.52 -25.94 -0.20 -1.48 16 22 H 0.03 0.53 6.57 -51.93 -0.34 0.19 16 23 H 0.06 1.32 6.62 -51.93 -0.34 0.98 16 24 H 0.04 0.76 8.14 -51.92 -0.42 0.34 16 25 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.05 1.14 6.62 -51.93 -0.34 0.79 16 27 H 0.04 0.74 7.60 -51.93 -0.39 0.35 16 28 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 31 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.34 4.76 6.77 -39.29 -0.27 4.49 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.03 0.42 7.74 -51.93 -0.40 0.02 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.09 0.86 7.94 -51.93 -0.41 0.45 16 38 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.10 0.62 8.10 -51.93 -0.42 0.20 16 40 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.10 0.74 7.96 -51.93 -0.41 0.32 16 43 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 337.78 15.07 5.09 5.09 Total: -1.00 -29.66 337.78 -8.55 -38.21 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -7.84 Total: -0.24 kcal Atomic # 6 Polarization: -19.34 SS G_CDS: -0.90 Total: -20.24 kcal Atomic # 7 Polarization: -37.25 SS G_CDS: 0.09 Total: -37.17 kcal Atomic # 9 Polarization: -2.40 SS G_CDS: 0.04 Total: -2.37 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.66 -8.55 -38.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309709112.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.353 kcal (2) G-P(sol) polarization free energy of solvation -29.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds