Wall clock time and date at job start Mon Mar 30 2020 06:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47451 * 2 1 4 4 C 1.53006 * 109.46699 * 239.99896 * 2 1 3 5 5 C 1.50703 * 109.46809 * 60.00332 * 4 2 1 6 6 H 1.07999 * 120.00364 * 359.97438 * 5 4 2 7 7 C 1.37875 * 119.99618 * 179.97438 * 5 4 2 8 8 N 1.31516 * 120.00323 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99863 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47021 * 90.00187 * 9 7 5 11 11 H 1.48501 * 109.47644 * 210.00201 * 9 7 5 12 12 H 1.48503 * 109.47392 * 330.00376 * 9 7 5 13 13 C 1.53002 * 109.47156 * 120.00418 * 2 1 3 14 14 N 1.46895 * 109.46887 * 299.99363 * 13 2 1 15 15 C 1.46908 * 110.99725 * 180.02562 * 14 13 2 16 16 C 1.53008 * 109.46829 * 180.02562 * 15 14 13 17 17 C 1.52994 * 109.46835 * 180.02562 * 16 15 14 18 18 F 1.39901 * 112.90952 * 311.25060 * 17 16 15 19 19 C 1.53784 * 113.61233 * 179.97438 * 17 16 15 20 20 C 1.53787 * 87.07923 * 220.01769 * 19 17 16 21 21 C 1.53779 * 113.61529 * 82.50384 * 17 16 15 22 22 H 1.09007 * 109.46854 * 299.99467 * 1 2 3 23 23 H 1.08999 * 109.47527 * 59.99732 * 1 2 3 24 24 H 1.09007 * 109.47305 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47124 * 180.02562 * 3 2 1 26 26 H 1.08999 * 109.46974 * 300.00606 * 3 2 1 27 27 H 1.08997 * 109.47187 * 60.00270 * 3 2 1 28 28 H 1.08998 * 109.46658 * 180.02562 * 4 2 1 29 29 H 1.08998 * 109.47270 * 300.00060 * 4 2 1 30 30 H 0.97001 * 120.00251 * 179.97438 * 8 7 5 31 31 H 1.09001 * 109.47021 * 179.97438 * 13 2 1 32 32 H 1.08998 * 109.47408 * 59.99575 * 13 2 1 33 33 H 1.00907 * 110.99966 * 56.05360 * 14 13 2 34 34 H 1.09000 * 109.46747 * 60.00695 * 15 14 13 35 35 H 1.08997 * 109.47455 * 299.99920 * 15 14 13 36 36 H 1.08997 * 109.47160 * 60.00145 * 16 15 14 37 37 H 1.08997 * 109.46852 * 300.00063 * 16 15 14 38 38 H 1.09004 * 113.61451 * 105.47254 * 19 17 16 39 39 H 1.08994 * 113.61477 * 334.56556 * 19 17 16 40 40 H 1.08997 * 113.61028 * 139.98291 * 20 19 17 41 41 H 1.09000 * 113.61529 * 270.88430 * 20 19 17 42 42 H 1.09006 * 113.61307 * 25.43275 * 21 17 16 43 43 H 1.08999 * 113.69146 * 254.53761 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.5375 -0.0108 -2.4797 6 1 0.9164 0.8671 -2.3806 7 6 1.8710 -0.4816 -3.7320 8 7 2.6270 -1.5509 -3.8527 9 14 1.2477 0.3986 -5.2571 10 1 2.2253 1.4410 -5.6612 11 1 1.0833 -0.5805 -6.3615 12 1 -0.0608 1.0354 -4.9613 13 6 2.0400 -0.7213 1.2492 14 7 1.5505 -0.0288 2.4486 15 6 2.0220 -0.6947 3.6703 16 6 1.4925 0.0532 4.8956 17 6 1.9841 -0.6399 6.1678 18 9 1.7770 -2.0234 6.1491 19 6 1.5053 0.0376 7.4627 20 6 2.9083 -0.2343 8.0307 21 6 3.4102 -0.2361 6.5776 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 3.1301 1.4423 -0.0005 26 1 1.6767 1.9563 -0.8899 27 1 1.6768 1.9562 0.8900 28 1 3.1299 -0.7217 -1.2491 29 1 1.6765 -1.7489 -1.2493 30 1 2.8613 -1.8823 -4.7337 31 1 3.1300 -0.7217 1.2490 32 1 1.6766 -1.7490 1.2492 33 1 0.5439 0.0412 2.4402 34 1 3.1119 -0.6941 3.6868 35 1 1.6589 -1.7223 3.6873 36 1 0.4026 0.0523 4.8788 37 1 1.8553 1.0809 4.8787 38 1 0.7135 -0.5093 7.9746 39 1 1.2803 1.0974 7.3435 40 1 3.3041 0.5869 8.6282 41 1 2.9992 -1.2013 8.5256 42 1 3.7058 0.7491 6.2166 43 1 4.1579 -1.0029 6.3751 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309709112.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:14 Heat of formation + Delta-G solvation = -73.805521 kcal Electronic energy + Delta-G solvation = -19490.148734 eV Core-core repulsion = 16483.532058 eV Total energy + Delta-G solvation = -3006.616676 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.185 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.69290 -39.40964 -38.86221 -36.13576 -34.33997 -31.50640 -28.93392 -27.89106 -27.05000 -26.75533 -25.33260 -23.79175 -22.43504 -20.49398 -19.51392 -18.33772 -17.20477 -16.98646 -16.60287 -16.51210 -16.21053 -15.54092 -15.37512 -15.05318 -14.79639 -14.36393 -14.14500 -13.89425 -13.82162 -13.53194 -13.33023 -12.90175 -12.70313 -12.68808 -12.60267 -12.28276 -12.25484 -12.14129 -12.02453 -11.90876 -11.81496 -11.37748 -11.12205 -11.03171 -10.85773 -10.66036 -10.50840 -9.34767 -8.14066 -6.21483 1.41197 1.41923 1.52520 2.43840 3.09072 3.19796 3.33887 3.37916 3.66630 3.82161 3.88949 4.07852 4.17052 4.27590 4.34885 4.39710 4.63079 4.69650 4.75960 4.77635 4.78920 4.81521 4.91671 4.95014 5.02379 5.03666 5.08391 5.12593 5.21972 5.22476 5.24145 5.51409 5.53435 5.53707 5.58802 5.65415 5.86927 5.92404 6.04163 6.36094 6.50857 6.93817 7.46027 8.98501 Molecular weight = 257.19amu Principal moments of inertia in cm(-1) A = 0.053903 B = 0.003278 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.323384 B = 8540.369995 C = 8647.964277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.056 4.056 3 C -0.106 4.106 4 C 0.039 3.961 5 C -0.514 4.514 6 H 0.068 0.932 7 C -0.006 4.006 8 N -0.940 5.940 9 Si 0.958 3.042 10 H -0.275 1.275 11 H -0.287 1.287 12 H -0.261 1.261 13 C 0.081 3.919 14 N -0.677 5.677 15 C 0.059 3.941 16 C -0.116 4.116 17 C 0.076 3.924 18 F -0.213 7.213 19 C -0.147 4.147 20 C -0.139 4.139 21 C -0.156 4.156 22 H 0.069 0.931 23 H 0.048 0.952 24 H 0.034 0.966 25 H 0.029 0.971 26 H 0.039 0.961 27 H 0.070 0.930 28 H -0.017 1.017 29 H -0.019 1.019 30 H 0.260 0.740 31 H 0.055 0.945 32 H 0.012 0.988 33 H 0.344 0.656 34 H 0.066 0.934 35 H 0.016 0.984 36 H 0.076 0.924 37 H 0.105 0.895 38 H 0.076 0.924 39 H 0.118 0.882 40 H 0.092 0.908 41 H 0.077 0.923 42 H 0.113 0.887 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.362 5.741 23.009 23.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.057 4.057 3 C -0.163 4.163 4 C 0.002 3.998 5 C -0.552 4.552 6 H 0.086 0.914 7 C -0.203 4.203 8 N -0.581 5.581 9 Si 0.783 3.217 10 H -0.200 1.200 11 H -0.213 1.213 12 H -0.185 1.185 13 C -0.048 4.048 14 N -0.309 5.309 15 C -0.071 4.071 16 C -0.154 4.154 17 C 0.058 3.942 18 F -0.193 7.193 19 C -0.185 4.185 20 C -0.176 4.176 21 C -0.194 4.194 22 H 0.088 0.912 23 H 0.067 0.933 24 H 0.053 0.947 25 H 0.049 0.951 26 H 0.059 0.941 27 H 0.089 0.911 28 H 0.001 0.999 29 H 0.000 1.000 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.030 0.970 33 H 0.164 0.836 34 H 0.085 0.915 35 H 0.035 0.965 36 H 0.095 0.905 37 H 0.124 0.876 38 H 0.095 0.905 39 H 0.136 0.864 40 H 0.111 0.889 41 H 0.095 0.905 42 H 0.132 0.868 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.793 6.057 22.892 23.748 hybrid contribution -0.446 -1.351 -1.337 1.952 sum -2.239 4.706 21.555 22.177 Atomic orbital electron populations 1.21688 0.94576 1.00317 1.01362 1.20511 0.95919 0.96287 0.92963 1.21495 0.99110 0.94998 1.00712 1.19014 0.94027 0.93927 0.92864 1.21625 1.30251 1.11935 0.91373 0.91412 1.25953 0.95720 0.95895 1.02689 1.70118 1.38949 1.24982 1.24052 0.85548 0.79162 0.78189 0.78779 1.20048 1.21309 1.18533 1.21819 0.99098 0.94102 0.89815 1.60533 1.16687 1.53109 1.00621 1.21875 1.00365 0.95118 0.89703 1.21931 1.01860 1.00735 0.90855 1.22180 0.99391 0.75615 0.97062 1.92791 1.96016 1.32906 1.97624 1.23568 0.98275 1.02790 0.93836 1.22845 0.95782 1.02932 0.96056 1.23618 0.94864 1.03691 0.97190 0.91181 0.93281 0.94730 0.95140 0.94149 0.91092 0.99851 1.00035 0.93166 0.92619 0.96977 0.83605 0.91537 0.96541 0.90489 0.87647 0.90520 0.86362 0.88893 0.90481 0.86819 0.91338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.44 7.89 71.98 0.57 -3.87 16 2 C -0.06 -2.27 0.60 -52.18 -0.03 -2.31 16 3 C -0.11 -4.01 8.06 71.98 0.58 -3.43 16 4 C 0.04 2.08 4.04 29.85 0.12 2.20 16 5 C -0.51 -28.72 7.65 25.60 0.20 -28.52 16 6 H 0.07 3.61 5.68 -2.91 -0.02 3.59 16 7 C -0.01 -0.35 5.46 84.65 0.46 0.11 16 8 N -0.94 -58.22 13.29 21.45 0.28 -57.94 16 9 Si 0.96 44.72 29.54 68.60 2.03 46.75 16 10 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 11 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 12 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 13 C 0.08 2.88 4.65 86.30 0.40 3.28 16 14 N -0.68 -18.75 5.71 -513.86 -2.94 -21.68 16 15 C 0.06 1.44 5.48 86.30 0.47 1.91 16 16 C -0.12 -2.09 5.20 30.60 0.16 -1.93 16 17 C 0.08 1.35 1.62 -10.27 -0.02 1.34 16 18 F -0.21 -5.21 16.54 44.97 0.74 -4.47 16 19 C -0.15 -1.86 7.54 31.12 0.23 -1.63 16 20 C -0.14 -1.70 8.06 31.11 0.25 -1.45 16 21 C -0.16 -2.31 7.52 31.11 0.23 -2.08 16 22 H 0.07 2.03 6.57 -2.38 -0.02 2.01 16 23 H 0.05 1.93 6.62 -2.39 -0.02 1.91 16 24 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 25 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.04 1.62 6.62 -2.39 -0.02 1.61 16 27 H 0.07 2.27 7.60 -2.39 -0.02 2.26 16 28 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 29 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 30 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 31 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.34 8.77 6.77 -89.69 -0.61 8.16 16 34 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.02 0.45 7.74 -2.39 -0.02 0.43 16 36 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.11 1.62 7.94 -2.39 -0.02 1.60 16 38 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.12 1.05 8.10 -2.39 -0.02 1.03 16 40 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.11 1.36 7.96 -2.38 -0.02 1.35 16 43 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -64.93 337.78 4.10 -60.83 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: 0.35 Total: 12.88 kcal Atomic # 6 Polarization: -39.99 SS G_CDS: 3.63 Total: -36.36 kcal Atomic # 7 Polarization: -76.97 SS G_CDS: -2.65 Total: -79.62 kcal Atomic # 9 Polarization: -5.21 SS G_CDS: 0.74 Total: -4.47 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -64.93 4.10 -60.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309709112.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.976 kcal (2) G-P(sol) polarization free energy of solvation -64.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds