Wall clock time and date at job start Mon Mar 30 2020 06:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86807 * 120.00108 * 2 1 4 4 H 1.48502 * 109.47048 * 270.00267 * 3 2 1 5 5 H 1.48501 * 109.46935 * 30.00011 * 3 2 1 6 6 H 1.48497 * 109.47195 * 149.99698 * 3 2 1 7 7 C 1.37879 * 120.00128 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99616 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99876 * 180.02562 * 7 2 1 10 10 C 1.53005 * 109.46797 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46853 * 179.97438 * 10 9 7 12 12 N 1.46501 * 109.46839 * 179.97438 * 11 10 9 13 13 C 1.34953 * 126.02308 * 125.03021 * 12 11 10 14 14 C 1.35310 * 107.75848 * 180.02562 * 13 12 11 15 15 C 1.39943 * 107.91366 * 359.97438 * 14 13 12 16 16 Br 1.89103 * 125.91082 * 180.02562 * 15 14 13 17 17 N 1.30894 * 108.18303 * 0.02562 * 15 14 13 18 18 H 0.97004 * 119.99793 * 359.97438 * 1 2 3 19 19 H 1.08997 * 109.47605 * 60.00039 * 9 7 2 20 20 H 1.09005 * 109.47283 * 299.99488 * 9 7 2 21 21 H 1.08997 * 109.46920 * 59.99731 * 10 9 7 22 22 H 1.08996 * 109.46899 * 299.99797 * 10 9 7 23 23 H 1.09001 * 109.46804 * 60.00052 * 11 10 9 24 24 H 1.08996 * 109.47350 * 300.00344 * 11 10 9 25 25 H 1.07996 * 126.12068 * 359.96131 * 13 12 11 26 26 H 1.07997 * 126.04579 * 179.97438 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6365 -0.0001 11 6 5.5516 -2.6365 -0.0001 12 7 6.0399 -4.0177 0.0004 13 6 6.8951 -4.5575 -0.8932 14 6 7.0935 -5.8501 -0.5458 15 6 6.3335 -6.1093 0.6003 16 35 6.2365 -7.7605 1.5169 17 7 5.7013 -5.0110 0.9282 18 1 -0.4850 0.8401 0.0004 19 1 3.8747 -0.6808 0.8905 20 1 3.8753 -0.6796 -0.8895 21 1 3.6586 -3.1501 -0.8903 22 1 3.6579 -3.1505 0.8896 23 1 5.9149 -2.1227 0.8899 24 1 5.9149 -2.1225 -0.8900 25 1 7.3405 -4.0491 -1.7355 26 1 7.7264 -6.5569 -1.0618 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379047535.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:01 Heat of formation + Delta-G solvation = 66.911454 kcal Electronic energy + Delta-G solvation = -11499.950111 eV Core-core repulsion = 9240.418876 eV Total energy + Delta-G solvation = -2259.531235 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 258.006 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.17484 -35.27255 -32.99193 -31.74554 -30.23365 -30.10353 -26.94324 -23.43198 -21.24680 -20.72801 -19.97142 -17.27431 -16.55317 -15.40406 -14.51519 -14.39221 -14.01730 -13.57933 -13.03349 -12.76073 -12.39131 -11.95533 -11.43122 -11.14870 -10.94698 -10.84699 -10.29696 -10.13413 -9.93029 -9.83861 -9.31332 -9.20732 -8.60556 -8.57788 -6.09853 -4.09231 1.19642 1.81458 2.54618 2.82324 3.24837 3.32963 3.34547 4.38528 4.58135 4.86208 5.22786 5.33881 5.42376 5.55296 5.61665 5.70777 6.17406 6.30279 6.38659 6.69090 6.99741 7.15132 7.25359 7.51201 7.69830 8.47002 8.94997 9.50971 11.03559 Molecular weight = 258.01amu Principal moments of inertia in cm(-1) A = 0.048778 B = 0.004214 C = 0.003972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.888852 B = 6643.104272 C = 7047.952432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.067 3.933 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.523 4.523 8 H 0.072 0.928 9 C -0.010 4.010 10 C -0.113 4.113 11 C 0.123 3.877 12 N -0.345 5.345 13 C 0.060 3.940 14 C -0.254 4.254 15 C 0.059 3.941 16 Br 0.020 6.980 17 N -0.253 5.253 18 H 0.264 0.736 19 H 0.019 0.981 20 H 0.013 0.987 21 H 0.060 0.940 22 H 0.071 0.929 23 H 0.086 0.914 24 H 0.098 0.902 25 H 0.181 0.819 26 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.428 -12.976 -0.429 21.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.135 4.135 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.561 4.561 8 H 0.090 0.910 9 C -0.048 4.048 10 C -0.152 4.152 11 C 0.003 3.997 12 N -0.128 5.128 13 C -0.088 4.088 14 C -0.285 4.285 15 C -0.185 4.185 16 Br 0.101 6.899 17 N -0.078 5.078 18 H 0.074 0.926 19 H 0.038 0.962 20 H 0.032 0.968 21 H 0.079 0.921 22 H 0.090 0.910 23 H 0.104 0.896 24 H 0.116 0.884 25 H 0.198 0.802 26 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 16.378 -12.741 0.724 20.763 hybrid contribution 0.876 0.934 -0.845 1.534 sum 17.253 -11.807 -0.121 20.907 Atomic orbital electron populations 1.69915 1.06327 1.26982 1.50737 1.25041 0.94761 0.99186 0.94481 0.86764 0.80339 0.83595 0.78471 1.20259 1.21274 1.19019 1.21064 0.89155 0.94638 1.51223 0.90951 1.19530 0.97709 0.91068 0.96474 1.21797 0.89440 1.00974 1.02955 1.22297 0.98542 0.75080 1.03740 1.49087 1.33536 1.10505 1.19677 1.22654 0.95171 0.94495 0.96434 1.21263 1.09673 0.96949 1.00604 1.23781 1.02209 0.93795 0.98728 1.96692 1.98299 1.18444 1.76422 1.77539 1.21139 0.95698 1.13421 0.92623 0.96248 0.96838 0.92110 0.91026 0.89562 0.88429 0.80241 0.82920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.74 13.96 55.43 0.77 -26.96 15 2 C 0.07 1.93 5.47 -17.82 -0.10 1.83 15 3 Si 0.88 21.19 27.47 -169.99 -4.67 16.52 15 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 15 5 H -0.29 -6.89 7.11 56.52 0.40 -6.48 15 6 H -0.27 -6.04 6.54 56.52 0.37 -5.67 15 7 C -0.52 -14.80 9.66 -34.44 -0.33 -15.13 15 8 H 0.07 2.24 7.99 -52.49 -0.42 1.82 15 9 C -0.01 -0.22 4.04 -27.88 -0.11 -0.34 15 10 C -0.11 -2.19 5.34 -26.73 -0.14 -2.34 15 11 C 0.12 1.83 6.51 -4.04 -0.03 1.80 15 12 N -0.34 -5.23 3.68 -61.37 -0.23 -5.45 15 13 C 0.06 0.72 11.45 -17.22 -0.20 0.52 15 14 C -0.25 -3.14 10.78 -39.99 -0.43 -3.57 15 15 C 0.06 0.87 7.71 -17.31 -0.13 0.74 15 16 Br 0.02 0.25 34.11 -68.01 -2.32 -2.07 15 17 N -0.25 -4.35 12.42 31.92 0.40 -3.95 15 18 H 0.26 7.57 8.31 -40.82 -0.34 7.23 15 19 H 0.02 0.44 7.20 -51.93 -0.37 0.06 15 20 H 0.01 0.29 7.57 -51.93 -0.39 -0.10 15 21 H 0.06 1.21 8.14 -51.93 -0.42 0.79 15 22 H 0.07 1.51 8.14 -51.93 -0.42 1.09 15 23 H 0.09 1.23 8.14 -51.93 -0.42 0.80 15 24 H 0.10 1.16 8.07 -51.93 -0.42 0.74 15 25 H 0.18 1.40 8.06 -52.49 -0.42 0.98 15 26 H 0.15 1.46 8.06 -52.49 -0.42 1.04 15 LS Contribution 253.03 15.07 3.81 3.81 Total: -1.00 -31.80 253.03 -6.59 -38.39 By element: Atomic # 1 Polarization: -0.90 SS G_CDS: -2.89 Total: -3.79 kcal Atomic # 6 Polarization: -15.01 SS G_CDS: -1.47 Total: -16.49 kcal Atomic # 7 Polarization: -37.32 SS G_CDS: 0.94 Total: -36.37 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.67 Total: 16.52 kcal Atomic # 35 Polarization: 0.25 SS G_CDS: -2.32 Total: -2.07 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -31.80 -6.59 -38.39 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379047535.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.298 kcal (2) G-P(sol) polarization free energy of solvation -31.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds