Wall clock time and date at job start Mon Mar 30 2020 06:42:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31517 * 1
3 3 Si 1.86807 * 120.00108 * 2 1
4 4 H 1.48502 * 109.47048 * 270.00267 * 3 2 1
5 5 H 1.48501 * 109.46935 * 30.00011 * 3 2 1
6 6 H 1.48497 * 109.47195 * 149.99698 * 3 2 1
7 7 C 1.37879 * 120.00128 * 180.02562 * 2 1 3
8 8 H 1.07999 * 119.99616 * 359.97438 * 7 2 1
9 9 C 1.50702 * 119.99876 * 180.02562 * 7 2 1
10 10 C 1.53005 * 109.46797 * 179.97438 * 9 7 2
11 11 C 1.52999 * 109.46853 * 179.97438 * 10 9 7
12 12 N 1.46501 * 109.46839 * 179.97438 * 11 10 9
13 13 C 1.34953 * 126.02308 * 125.03021 * 12 11 10
14 14 C 1.35310 * 107.75848 * 180.02562 * 13 12 11
15 15 C 1.39943 * 107.91366 * 359.97438 * 14 13 12
16 16 Br 1.89103 * 125.91082 * 180.02562 * 15 14 13
17 17 N 1.30894 * 108.18303 * 0.02562 * 15 14 13
18 18 H 0.97004 * 119.99793 * 359.97438 * 1 2 3
19 19 H 1.08997 * 109.47605 * 60.00039 * 9 7 2
20 20 H 1.09005 * 109.47283 * 299.99488 * 9 7 2
21 21 H 1.08997 * 109.46920 * 59.99731 * 10 9 7
22 22 H 1.08996 * 109.46899 * 299.99797 * 10 9 7
23 23 H 1.09001 * 109.46804 * 60.00052 * 11 10 9
24 24 H 1.08996 * 109.47350 * 300.00344 * 11 10 9
25 25 H 1.07996 * 126.12068 * 359.96131 * 13 12 11
26 26 H 1.07997 * 126.04579 * 179.97438 * 14 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6178 0.0000
4 1 2.4967 2.0465 -1.4001
5 1 1.4467 2.6527 0.7001
6 1 3.5467 1.4402 0.7001
7 6 2.0046 -1.1940 -0.0005
8 1 1.4646 -2.1293 -0.0005
9 6 3.5116 -1.1940 0.0000
10 6 4.0216 -2.6365 -0.0001
11 6 5.5516 -2.6365 -0.0001
12 7 6.0399 -4.0177 0.0004
13 6 6.8951 -4.5575 -0.8932
14 6 7.0935 -5.8501 -0.5458
15 6 6.3335 -6.1093 0.6003
16 35 6.2365 -7.7605 1.5169
17 7 5.7013 -5.0110 0.9282
18 1 -0.4850 0.8401 0.0004
19 1 3.8747 -0.6808 0.8905
20 1 3.8753 -0.6796 -0.8895
21 1 3.6586 -3.1501 -0.8903
22 1 3.6579 -3.1505 0.8896
23 1 5.9149 -2.1227 0.8899
24 1 5.9149 -2.1225 -0.8900
25 1 7.3405 -4.0491 -1.7355
26 1 7.7264 -6.5569 -1.0618
RHF calculation, no. of doubly occupied orbitals= 36
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000379047535.mol2 26
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:42:00
Heat of formation + Delta-G solvation = 46.004039 kcal
Electronic energy + Delta-G solvation = -11500.856725 eV
Core-core repulsion = 9240.418876 eV
Total energy + Delta-G solvation = -2260.437849 eV
No. of doubly occupied orbitals = 36
Molecular weight
(most abundant/longest-lived isotopes) = 258.006 amu
Computer time = 0.16 seconds
Orbital eigenvalues (eV)
-42.20250 -36.77586 -34.77113 -33.19544 -31.55083 -31.14958 -28.53345 -25.02658
-22.39854 -22.14948 -21.24669 -19.03468 -17.98161 -16.60769 -16.29830 -15.75846
-15.26140 -14.88016 -14.52286 -14.03912 -13.94404 -13.40444 -13.03597 -12.69226
-12.21352 -12.08566 -11.80272 -11.73027 -11.57054 -11.40653 -11.27198 -10.77910
-10.29563 -9.61479 -8.30598 -6.37041 0.16703 0.78180 1.37470 1.41135
1.52537 1.58619 1.80241 2.36556 3.04868 3.56486 3.97500 4.05014
4.30760 4.38438 4.66126 4.69929 4.76164 4.82388 4.93200 5.32602
5.41388 5.49793 5.62437 6.03180 6.25642 6.46654 6.71580 7.27636
8.86886
Molecular weight = 258.01amu
Principal moments of inertia in cm(-1)
A = 0.048778 B = 0.004214 C = 0.003972
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 573.888852 B = 6643.104272 C = 7047.952432
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.956 5.956
2 C -0.002 4.002
3 Si 0.961 3.039
4 H -0.261 1.261
5 H -0.289 1.289
6 H -0.237 1.237
7 C -0.540 4.540
8 H 0.020 0.980
9 C -0.006 4.006
10 C -0.102 4.102
11 C 0.133 3.867
12 N -0.359 5.359
13 C 0.073 3.927
14 C -0.259 4.259
15 C 0.046 3.954
16 Br 0.031 6.969
17 N -0.311 5.311
18 H 0.267 0.733
19 H 0.029 0.971
20 H 0.038 0.962
21 H 0.046 0.954
22 H 0.039 0.961
23 H 0.094 0.906
24 H 0.139 0.861
25 H 0.228 0.772
26 H 0.181 0.819
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 20.557 -11.807 -1.530 23.756
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.596 5.596
2 C -0.198 4.198
3 Si 0.782 3.218
4 H -0.185 1.185
5 H -0.215 1.215
6 H -0.160 1.160
7 C -0.578 4.578
8 H 0.038 0.962
9 C -0.043 4.043
10 C -0.141 4.141
11 C 0.013 3.987
12 N -0.143 5.143
13 C -0.074 4.074
14 C -0.290 4.290
15 C -0.198 4.198
16 Br 0.112 6.888
17 N -0.137 5.137
18 H 0.075 0.925
19 H 0.047 0.953
20 H 0.056 0.944
21 H 0.065 0.935
22 H 0.058 0.942
23 H 0.112 0.888
24 H 0.157 0.843
25 H 0.244 0.756
26 H 0.198 0.802
Dipole moment (debyes) X Y Z Total
from point charges 19.530 -11.610 -0.375 22.723
hybrid contribution -0.166 0.417 -0.508 0.678
sum 19.364 -11.192 -0.882 22.383
Atomic orbital electron populations
1.70101 1.08724 1.28357 1.52458 1.26179 0.95710 1.04104 0.93791
0.85516 0.79603 0.77115 0.79518 1.18543 1.21459 1.15984 1.21481
0.92500 0.92836 1.51011 0.96196 1.19452 0.93660 0.93519 0.97713
1.21524 0.93450 0.98363 1.00756 1.22166 0.94586 0.75747 1.06188
1.49073 1.34612 1.10305 1.20305 1.23456 0.93356 0.94329 0.96221
1.21701 1.09550 0.97877 0.99841 1.24233 1.02081 0.93854 0.99596
1.96682 1.98283 1.17362 1.76473 1.77469 1.23419 0.97141 1.15670
0.92451 0.95299 0.94379 0.93547 0.94223 0.88815 0.84297 0.75604
0.80185
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.96 -60.72 13.96 21.45 0.30 -60.42 15
2 C 0.00 -0.09 5.47 84.65 0.46 0.37 15
3 Si 0.96 42.72 27.47 68.60 1.88 44.60 15
4 H -0.26 -10.90 7.11 99.48 0.71 -10.19 15
5 H -0.29 -12.84 7.11 99.48 0.71 -12.13 15
6 H -0.24 -9.38 6.54 99.48 0.65 -8.73 15
7 C -0.54 -31.40 9.66 25.60 0.25 -31.15 15
8 H 0.02 1.30 7.99 -2.91 -0.02 1.28 15
9 C -0.01 -0.24 4.04 29.85 0.12 -0.12 15
10 C -0.10 -3.93 5.34 30.60 0.16 -3.77 15
11 C 0.13 3.56 6.51 86.38 0.56 4.12 15
12 N -0.36 -10.10 3.68 -348.07 -1.28 -11.38 15
13 C 0.07 1.48 11.45 83.54 0.96 2.44 15
14 C -0.26 -5.70 10.78 22.01 0.24 -5.46 15
15 C 0.05 1.31 7.71 85.25 0.66 1.96 15
16 Br 0.03 0.74 34.11 -20.37 -0.69 0.05 15
17 N -0.31 -10.60 12.42 -52.94 -0.66 -11.26 15
18 H 0.27 15.71 8.31 -92.70 -0.77 14.94 15
19 H 0.03 1.22 7.20 -2.39 -0.02 1.21 15
20 H 0.04 1.51 7.57 -2.38 -0.02 1.49 15
21 H 0.05 1.87 8.14 -2.39 -0.02 1.85 15
22 H 0.04 1.73 8.14 -2.39 -0.02 1.71 15
23 H 0.09 2.38 8.14 -2.39 -0.02 2.36 15
24 H 0.14 2.58 8.07 -2.39 -0.02 2.56 15
25 H 0.23 2.20 8.06 -2.91 -0.02 2.18 15
26 H 0.18 2.81 8.06 -2.91 -0.02 2.78 15
Total: -1.00 -72.79 253.03 4.07 -68.72
By element:
Atomic # 1 Polarization: 0.19 SS G_CDS: 1.11 Total: 1.30 kcal
Atomic # 6 Polarization: -35.02 SS G_CDS: 3.41 Total: -31.61 kcal
Atomic # 7 Polarization: -81.42 SS G_CDS: -1.64 Total: -83.06 kcal
Atomic # 14 Polarization: 42.72 SS G_CDS: 1.88 Total: 44.60 kcal
Atomic # 35 Polarization: 0.74 SS G_CDS: -0.69 Total: 0.05 kcal
Total: -72.79 4.07 -68.72 kcal
The number of atoms in the molecule is 26
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000379047535.mol2 26
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 114.727 kcal
(2) G-P(sol) polarization free energy of solvation -72.792 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.934 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.070 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.723 kcal
(6) G-S(sol) free energy of system = (1) + (5) 46.004 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.16 seconds