Wall clock time and date at job start Mon Mar 30 2020 06:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86807 * 120.00108 * 2 1 4 4 H 1.48502 * 109.47048 * 270.00267 * 3 2 1 5 5 H 1.48501 * 109.46935 * 30.00011 * 3 2 1 6 6 H 1.48497 * 109.47195 * 149.99698 * 3 2 1 7 7 C 1.37879 * 120.00128 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99616 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99876 * 180.02562 * 7 2 1 10 10 C 1.53005 * 109.46797 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46853 * 179.97438 * 10 9 7 12 12 N 1.46501 * 109.46839 * 179.97438 * 11 10 9 13 13 C 1.34953 * 126.02308 * 125.03021 * 12 11 10 14 14 C 1.35310 * 107.75848 * 180.02562 * 13 12 11 15 15 C 1.39943 * 107.91366 * 359.97438 * 14 13 12 16 16 Br 1.89103 * 125.91082 * 180.02562 * 15 14 13 17 17 N 1.30894 * 108.18303 * 0.02562 * 15 14 13 18 18 H 0.97004 * 119.99793 * 359.97438 * 1 2 3 19 19 H 1.08997 * 109.47605 * 60.00039 * 9 7 2 20 20 H 1.09005 * 109.47283 * 299.99488 * 9 7 2 21 21 H 1.08997 * 109.46920 * 59.99731 * 10 9 7 22 22 H 1.08996 * 109.46899 * 299.99797 * 10 9 7 23 23 H 1.09001 * 109.46804 * 60.00052 * 11 10 9 24 24 H 1.08996 * 109.47350 * 300.00344 * 11 10 9 25 25 H 1.07996 * 126.12068 * 359.96131 * 13 12 11 26 26 H 1.07997 * 126.04579 * 179.97438 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6365 -0.0001 11 6 5.5516 -2.6365 -0.0001 12 7 6.0399 -4.0177 0.0004 13 6 6.8951 -4.5575 -0.8932 14 6 7.0935 -5.8501 -0.5458 15 6 6.3335 -6.1093 0.6003 16 35 6.2365 -7.7605 1.5169 17 7 5.7013 -5.0110 0.9282 18 1 -0.4850 0.8401 0.0004 19 1 3.8747 -0.6808 0.8905 20 1 3.8753 -0.6796 -0.8895 21 1 3.6586 -3.1501 -0.8903 22 1 3.6579 -3.1505 0.8896 23 1 5.9149 -2.1227 0.8899 24 1 5.9149 -2.1225 -0.8900 25 1 7.3405 -4.0491 -1.7355 26 1 7.7264 -6.5569 -1.0618 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379047535.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:00 Heat of formation + Delta-G solvation = 46.004039 kcal Electronic energy + Delta-G solvation = -11500.856725 eV Core-core repulsion = 9240.418876 eV Total energy + Delta-G solvation = -2260.437849 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 258.006 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.20250 -36.77586 -34.77113 -33.19544 -31.55083 -31.14958 -28.53345 -25.02658 -22.39854 -22.14948 -21.24669 -19.03468 -17.98161 -16.60769 -16.29830 -15.75846 -15.26140 -14.88016 -14.52286 -14.03912 -13.94404 -13.40444 -13.03597 -12.69226 -12.21352 -12.08566 -11.80272 -11.73027 -11.57054 -11.40653 -11.27198 -10.77910 -10.29563 -9.61479 -8.30598 -6.37041 0.16703 0.78180 1.37470 1.41135 1.52537 1.58619 1.80241 2.36556 3.04868 3.56486 3.97500 4.05014 4.30760 4.38438 4.66126 4.69929 4.76164 4.82388 4.93200 5.32602 5.41388 5.49793 5.62437 6.03180 6.25642 6.46654 6.71580 7.27636 8.86886 Molecular weight = 258.01amu Principal moments of inertia in cm(-1) A = 0.048778 B = 0.004214 C = 0.003972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.888852 B = 6643.104272 C = 7047.952432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.002 4.002 3 Si 0.961 3.039 4 H -0.261 1.261 5 H -0.289 1.289 6 H -0.237 1.237 7 C -0.540 4.540 8 H 0.020 0.980 9 C -0.006 4.006 10 C -0.102 4.102 11 C 0.133 3.867 12 N -0.359 5.359 13 C 0.073 3.927 14 C -0.259 4.259 15 C 0.046 3.954 16 Br 0.031 6.969 17 N -0.311 5.311 18 H 0.267 0.733 19 H 0.029 0.971 20 H 0.038 0.962 21 H 0.046 0.954 22 H 0.039 0.961 23 H 0.094 0.906 24 H 0.139 0.861 25 H 0.228 0.772 26 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.557 -11.807 -1.530 23.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.198 4.198 3 Si 0.782 3.218 4 H -0.185 1.185 5 H -0.215 1.215 6 H -0.160 1.160 7 C -0.578 4.578 8 H 0.038 0.962 9 C -0.043 4.043 10 C -0.141 4.141 11 C 0.013 3.987 12 N -0.143 5.143 13 C -0.074 4.074 14 C -0.290 4.290 15 C -0.198 4.198 16 Br 0.112 6.888 17 N -0.137 5.137 18 H 0.075 0.925 19 H 0.047 0.953 20 H 0.056 0.944 21 H 0.065 0.935 22 H 0.058 0.942 23 H 0.112 0.888 24 H 0.157 0.843 25 H 0.244 0.756 26 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 19.530 -11.610 -0.375 22.723 hybrid contribution -0.166 0.417 -0.508 0.678 sum 19.364 -11.192 -0.882 22.383 Atomic orbital electron populations 1.70101 1.08724 1.28357 1.52458 1.26179 0.95710 1.04104 0.93791 0.85516 0.79603 0.77115 0.79518 1.18543 1.21459 1.15984 1.21481 0.92500 0.92836 1.51011 0.96196 1.19452 0.93660 0.93519 0.97713 1.21524 0.93450 0.98363 1.00756 1.22166 0.94586 0.75747 1.06188 1.49073 1.34612 1.10305 1.20305 1.23456 0.93356 0.94329 0.96221 1.21701 1.09550 0.97877 0.99841 1.24233 1.02081 0.93854 0.99596 1.96682 1.98283 1.17362 1.76473 1.77469 1.23419 0.97141 1.15670 0.92451 0.95299 0.94379 0.93547 0.94223 0.88815 0.84297 0.75604 0.80185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.72 13.96 21.45 0.30 -60.42 15 2 C 0.00 -0.09 5.47 84.65 0.46 0.37 15 3 Si 0.96 42.72 27.47 68.60 1.88 44.60 15 4 H -0.26 -10.90 7.11 99.48 0.71 -10.19 15 5 H -0.29 -12.84 7.11 99.48 0.71 -12.13 15 6 H -0.24 -9.38 6.54 99.48 0.65 -8.73 15 7 C -0.54 -31.40 9.66 25.60 0.25 -31.15 15 8 H 0.02 1.30 7.99 -2.91 -0.02 1.28 15 9 C -0.01 -0.24 4.04 29.85 0.12 -0.12 15 10 C -0.10 -3.93 5.34 30.60 0.16 -3.77 15 11 C 0.13 3.56 6.51 86.38 0.56 4.12 15 12 N -0.36 -10.10 3.68 -348.07 -1.28 -11.38 15 13 C 0.07 1.48 11.45 83.54 0.96 2.44 15 14 C -0.26 -5.70 10.78 22.01 0.24 -5.46 15 15 C 0.05 1.31 7.71 85.25 0.66 1.96 15 16 Br 0.03 0.74 34.11 -20.37 -0.69 0.05 15 17 N -0.31 -10.60 12.42 -52.94 -0.66 -11.26 15 18 H 0.27 15.71 8.31 -92.70 -0.77 14.94 15 19 H 0.03 1.22 7.20 -2.39 -0.02 1.21 15 20 H 0.04 1.51 7.57 -2.38 -0.02 1.49 15 21 H 0.05 1.87 8.14 -2.39 -0.02 1.85 15 22 H 0.04 1.73 8.14 -2.39 -0.02 1.71 15 23 H 0.09 2.38 8.14 -2.39 -0.02 2.36 15 24 H 0.14 2.58 8.07 -2.39 -0.02 2.56 15 25 H 0.23 2.20 8.06 -2.91 -0.02 2.18 15 26 H 0.18 2.81 8.06 -2.91 -0.02 2.78 15 Total: -1.00 -72.79 253.03 4.07 -68.72 By element: Atomic # 1 Polarization: 0.19 SS G_CDS: 1.11 Total: 1.30 kcal Atomic # 6 Polarization: -35.02 SS G_CDS: 3.41 Total: -31.61 kcal Atomic # 7 Polarization: -81.42 SS G_CDS: -1.64 Total: -83.06 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 1.88 Total: 44.60 kcal Atomic # 35 Polarization: 0.74 SS G_CDS: -0.69 Total: 0.05 kcal Total: -72.79 4.07 -68.72 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379047535.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.727 kcal (2) G-P(sol) polarization free energy of solvation -72.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds