Wall clock time and date at job start Mon Mar 30 2020 06:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35676 * 116.99635 * 2 1 4 4 C 1.38990 * 119.88774 * 0.02562 * 3 2 1 5 5 C 1.37918 * 120.08179 * 179.97438 * 4 3 2 6 6 F 1.35096 * 120.07487 * 180.02562 * 5 4 3 7 7 C 1.40288 * 119.85406 * 0.02562 * 5 4 3 8 8 C 1.47426 * 120.11436 * 179.97438 * 7 5 4 9 9 O 1.21848 * 119.99850 * 359.97438 * 8 7 5 10 10 C 1.41761 * 120.00272 * 180.02562 * 8 7 5 11 11 H 1.07997 * 120.00330 * 359.97438 * 10 8 7 12 12 C 1.40331 * 120.00066 * 180.02562 * 10 8 7 13 13 N 1.30539 * 120.00134 * 359.97438 * 12 10 8 14 14 Si 1.86800 * 120.00108 * 179.97438 * 12 10 8 15 15 H 1.48503 * 109.46790 * 59.99959 * 14 12 10 16 16 H 1.48499 * 109.47403 * 179.97438 * 14 12 10 17 17 H 1.48493 * 109.47237 * 300.00221 * 14 12 10 18 18 C 1.39973 * 119.77594 * 359.97438 * 7 5 4 19 19 C 1.37626 * 119.91629 * 359.72808 * 18 7 5 20 20 Cl 1.73596 * 119.92878 * 180.27471 * 19 18 7 21 21 H 1.09002 * 109.47382 * 59.99725 * 1 2 3 22 22 H 1.09001 * 109.46938 * 299.99712 * 1 2 3 23 23 H 1.09004 * 109.46926 * 179.97438 * 1 2 3 24 24 H 1.07999 * 119.95853 * 359.97274 * 4 3 2 25 25 H 0.97003 * 120.00174 * 180.02562 * 13 12 10 26 26 H 1.08000 * 120.04478 * 179.97438 * 18 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 1.2856 2.3731 0.0005 5 6 1.9075 3.6041 0.0011 6 9 1.1692 4.7355 0.0021 7 6 3.3083 3.6788 0.0005 8 6 3.9791 4.9916 0.0005 9 8 3.3165 6.0142 0.0005 10 6 5.3948 5.0643 -0.0006 11 1 5.9821 4.1580 -0.0010 12 6 6.0332 6.3140 0.0000 13 7 5.3234 7.4096 0.0010 14 14 7.8988 6.4098 -0.0008 15 1 8.4284 5.7368 -1.2140 16 1 8.3214 7.8334 -0.0006 17 1 8.4295 5.7353 1.2110 18 6 4.0672 2.5026 0.0000 19 6 3.4369 1.2791 0.0057 20 17 4.3777 -0.1798 0.0122 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 0.2072 2.3136 0.0005 25 1 5.7647 8.2734 0.0010 26 1 5.1459 2.5550 -0.0008 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382691944.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:22 Heat of formation + Delta-G solvation = -126.984857 kcal Electronic energy + Delta-G solvation = -16573.219863 eV Core-core repulsion = 13363.955282 eV Total energy + Delta-G solvation = -3209.264580 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 258.025 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.87632 -41.18849 -39.24253 -37.90269 -37.11565 -34.79645 -32.09352 -31.30278 -28.87769 -28.16246 -24.53624 -23.69664 -21.80639 -19.58319 -18.82129 -17.99008 -17.63235 -17.05400 -17.04980 -16.36721 -16.21627 -15.60163 -15.29874 -15.05157 -14.39852 -14.30764 -13.86552 -13.84724 -13.41472 -12.75276 -12.73527 -12.48603 -12.45084 -12.28198 -12.07283 -11.92377 -11.73032 -10.97903 -9.97347 -9.66383 -9.21140 -8.37087 -7.10563 -0.19518 -0.03571 1.07915 1.40272 1.40630 1.55548 1.98490 2.09380 2.21405 2.56538 3.18222 3.56301 3.62292 3.76767 4.01834 4.29762 4.34749 4.40173 4.56325 4.72499 4.83156 4.90506 5.15684 5.20566 5.48053 5.91875 6.12750 6.66535 6.70472 8.19563 8.45876 Molecular weight = 258.02amu Principal moments of inertia in cm(-1) A = 0.025099 B = 0.006940 C = 0.005453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.318288 B = 4033.458265 C = 5133.625090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.305 6.305 3 C 0.174 3.826 4 C -0.235 4.235 5 C 0.146 3.854 6 F -0.135 7.135 7 C -0.201 4.201 8 C 0.362 3.638 9 O -0.586 6.586 10 C -0.537 4.537 11 H 0.100 0.900 12 C 0.023 3.977 13 N -0.785 5.785 14 Si 0.996 3.004 15 H -0.249 1.249 16 H -0.271 1.271 17 H -0.249 1.249 18 C -0.013 4.013 19 C -0.093 4.093 20 Cl -0.043 7.043 21 H 0.068 0.932 22 H 0.068 0.932 23 H 0.132 0.868 24 H 0.178 0.822 25 H 0.283 0.717 26 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.721 -15.157 0.003 15.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.217 6.217 3 C 0.126 3.874 4 C -0.254 4.254 5 C 0.126 3.874 6 F -0.113 7.113 7 C -0.203 4.203 8 C 0.262 3.738 9 O -0.480 6.480 10 C -0.567 4.567 11 H 0.118 0.882 12 C -0.196 4.196 13 N -0.414 5.414 14 Si 0.814 3.186 15 H -0.173 1.173 16 H -0.196 1.196 17 H -0.173 1.173 18 C -0.032 4.032 19 C -0.120 4.120 20 Cl -0.014 7.014 21 H 0.087 0.913 22 H 0.087 0.913 23 H 0.150 0.850 24 H 0.195 0.805 25 H 0.094 0.906 26 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -3.990 -14.815 0.004 15.343 hybrid contribution 0.234 0.736 -0.002 0.772 sum -3.757 -14.079 0.002 14.572 Atomic orbital electron populations 1.23556 0.75541 1.06503 1.02771 1.86115 1.24123 1.24115 1.87360 1.18431 0.89912 0.85009 0.94039 1.21126 1.02314 0.88862 1.13094 1.18055 0.88698 0.82319 0.98358 1.91499 1.76289 1.50511 1.93020 1.21657 0.92557 0.98732 1.07386 1.18579 0.90545 0.85470 0.79209 1.90530 1.68536 1.37460 1.51506 1.21395 0.93233 0.94905 1.47181 0.88177 1.27289 1.06799 0.94332 0.91210 1.70107 1.40497 0.99665 1.31128 0.85085 0.74053 0.78609 0.80863 1.17287 1.19584 1.17277 1.21123 1.01408 0.87671 0.93010 1.20126 0.89157 0.88792 1.13926 1.98333 1.71662 1.34185 1.97226 0.91315 0.91311 0.84972 0.80521 0.90631 0.82171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 9.80 113.37 1.11 1.26 15 2 O -0.30 -7.44 9.94 -89.94 -0.89 -8.33 15 3 C 0.17 5.29 6.70 22.72 0.15 5.44 15 4 C -0.23 -7.54 8.99 22.37 0.20 -7.34 15 5 C 0.15 6.34 7.28 22.69 0.17 6.50 15 6 F -0.13 -6.61 15.54 44.97 0.70 -5.91 15 7 C -0.20 -9.55 5.89 -19.94 -0.12 -9.67 15 8 C 0.36 21.30 6.90 25.56 0.18 21.47 15 9 O -0.59 -39.65 13.88 -4.82 -0.07 -39.72 15 10 C -0.54 -29.44 8.85 23.65 0.21 -29.23 15 11 H 0.10 4.76 6.01 -2.91 -0.02 4.74 15 12 C 0.02 1.23 5.50 85.39 0.47 1.70 15 13 N -0.79 -46.39 11.73 21.89 0.26 -46.13 15 14 Si 1.00 38.47 29.56 68.60 2.03 40.50 15 15 H -0.25 -9.01 7.11 99.48 0.71 -8.30 15 16 H -0.27 -10.10 7.11 99.48 0.71 -9.40 15 17 H -0.25 -9.00 7.11 99.48 0.71 -8.30 15 18 C -0.01 -0.52 9.20 22.55 0.21 -0.31 15 19 C -0.09 -3.06 6.33 22.40 0.14 -2.92 15 20 Cl -0.04 -1.21 28.49 -2.72 -0.08 -1.28 15 21 H 0.07 0.91 7.65 -2.39 -0.02 0.90 15 22 H 0.07 0.91 7.65 -2.39 -0.02 0.90 15 23 H 0.13 1.18 8.14 -2.38 -0.02 1.16 15 24 H 0.18 4.30 6.27 -2.91 -0.02 4.28 15 25 H 0.28 14.96 8.29 -92.71 -0.77 14.19 15 26 H 0.16 5.89 6.19 -2.91 -0.02 5.87 15 Total: -1.00 -73.83 256.12 5.91 -67.93 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: 1.24 Total: 6.04 kcal Atomic # 6 Polarization: -15.81 SS G_CDS: 2.72 Total: -13.09 kcal Atomic # 7 Polarization: -46.39 SS G_CDS: 0.26 Total: -46.13 kcal Atomic # 8 Polarization: -47.09 SS G_CDS: -0.96 Total: -48.05 kcal Atomic # 9 Polarization: -6.61 SS G_CDS: 0.70 Total: -5.91 kcal Atomic # 14 Polarization: 38.47 SS G_CDS: 2.03 Total: 40.50 kcal Atomic # 17 Polarization: -1.21 SS G_CDS: -0.08 Total: -1.28 kcal Total: -73.83 5.91 -67.93 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382691944.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.056 kcal (2) G-P(sol) polarization free energy of solvation -73.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds