Wall clock time and date at job start Mon Mar 30 2020 06:24:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81392 * 1 3 3 C 1.81401 * 102.99977 * 2 1 4 4 C 1.53003 * 109.47016 * 180.02562 * 3 2 1 5 5 H 1.09002 * 110.33221 * 302.74473 * 4 3 2 6 6 C 1.54909 * 110.37382 * 180.37177 * 4 3 2 7 7 C 1.55144 * 101.65226 * 204.10011 * 6 4 3 8 8 C 1.54317 * 103.01861 * 35.65235 * 7 6 4 9 9 N 1.47440 * 107.23368 * 337.71644 * 8 7 6 10 10 C 1.46904 * 110.99676 * 236.73977 * 9 8 7 11 11 C 1.52992 * 109.47426 * 290.12754 * 10 9 8 12 12 C 1.53001 * 109.47218 * 180.02562 * 11 10 9 13 13 C 1.53007 * 109.46980 * 180.02562 * 12 11 10 14 14 C 1.50699 * 109.46776 * 179.97438 * 13 12 11 15 15 H 1.08001 * 119.99811 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00142 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00387 * 180.02562 * 16 14 13 18 18 Si 1.86803 * 119.99653 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.46928 * 90.00080 * 18 16 14 20 20 H 1.48500 * 109.47372 * 209.99562 * 18 16 14 21 21 H 1.48494 * 109.47330 * 329.99799 * 18 16 14 22 22 H 1.09000 * 109.47594 * 300.00001 * 1 2 3 23 23 H 1.08998 * 109.47405 * 60.00396 * 1 2 3 24 24 H 1.09003 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47359 * 59.99828 * 3 2 1 26 26 H 1.08999 * 109.47015 * 299.99681 * 3 2 1 27 27 H 1.09002 * 110.99134 * 86.00275 * 6 4 3 28 28 H 1.09000 * 110.98552 * 322.19141 * 6 4 3 29 29 H 1.08999 * 110.69931 * 277.27016 * 7 6 4 30 30 H 1.09000 * 110.70045 * 154.03817 * 7 6 4 31 31 H 1.09000 * 109.88423 * 97.12723 * 8 7 6 32 32 H 1.09001 * 109.88420 * 218.14685 * 8 7 6 33 33 H 1.08998 * 109.47010 * 50.12990 * 10 9 8 34 34 H 1.09006 * 109.46769 * 170.12494 * 10 9 8 35 35 H 1.09004 * 109.47263 * 300.00533 * 11 10 9 36 36 H 1.09006 * 109.47359 * 60.00101 * 11 10 9 37 37 H 1.08998 * 109.46948 * 300.00070 * 12 11 10 38 38 H 1.08994 * 109.47213 * 60.00376 * 12 11 10 39 39 H 1.08998 * 109.47186 * 299.99739 * 13 12 11 40 40 H 1.08994 * 109.46991 * 60.00055 * 13 12 11 41 41 H 0.97004 * 120.00243 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7423 1.9399 -0.0006 5 1 4.1813 1.4332 0.8588 6 6 4.1145 3.4436 0.0088 7 6 5.5354 3.4186 -0.6135 8 6 5.4366 2.2893 -1.6605 9 7 4.3192 1.4161 -1.2570 10 6 4.7697 0.0277 -1.0908 11 6 5.1093 -0.5656 -2.4594 12 6 5.5779 -2.0118 -2.2863 13 6 5.9182 -2.6050 -3.6551 14 6 6.3803 -4.0292 -3.4845 15 1 6.4262 -4.4675 -2.4985 16 6 6.7434 -4.7729 -4.5872 17 7 7.1462 -6.0160 -4.4384 18 14 6.6633 -4.0149 -6.2926 19 1 7.9629 -3.3698 -6.6091 20 1 6.3805 -5.0753 -7.2929 21 1 5.5829 -2.9969 -6.3315 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8031 2.2372 0.8899 26 1 1.8031 2.2371 -0.8900 27 1 4.1406 3.8330 1.0265 28 1 3.4271 4.0198 -0.6105 29 1 6.2830 3.1787 0.1426 30 1 5.7627 4.3704 -1.0935 31 1 5.2393 2.7129 -2.6453 32 1 6.3662 1.7205 -1.6813 33 1 5.6553 0.0066 -0.4557 34 1 3.9762 -0.5587 -0.6273 35 1 4.2237 -0.5445 -3.0946 36 1 5.9028 0.0207 -2.9229 37 1 6.4634 -2.0333 -1.6511 38 1 4.7842 -2.5979 -1.8232 39 1 5.0329 -2.5835 -4.2907 40 1 6.7120 -2.0188 -4.1179 41 1 7.4020 -6.5391 -5.2142 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385200527.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:48 Heat of formation + Delta-G solvation = -39.698561 kcal Electronic energy + Delta-G solvation = -17262.465456 eV Core-core repulsion = 14687.707850 eV Total energy + Delta-G solvation = -2574.757605 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.25305 -36.71184 -34.71874 -32.84018 -32.43799 -29.83299 -29.71622 -26.81461 -26.01501 -23.28648 -22.13087 -21.26913 -21.02673 -18.83433 -17.55904 -17.04505 -16.68406 -16.31782 -15.98873 -15.22983 -14.88017 -14.81442 -14.52730 -14.29736 -14.10257 -14.03517 -13.74448 -13.55311 -13.24327 -13.06430 -12.80211 -12.56895 -12.28108 -12.04404 -11.96564 -11.76433 -11.66363 -11.58423 -11.39488 -11.31344 -11.16937 -10.76038 -10.57571 -9.27213 -8.55480 -8.29374 -6.33474 0.82528 1.35236 1.37809 1.50829 1.79155 2.36980 2.92420 3.05762 3.66154 3.73457 3.99502 4.14111 4.18675 4.21280 4.27138 4.36689 4.38127 4.42792 4.54931 4.57149 4.65027 4.72479 4.81802 4.89995 4.90953 4.92679 5.00220 5.04040 5.14068 5.14949 5.25104 5.27505 5.36958 5.57465 5.65155 5.68444 6.10785 6.14755 6.29884 6.74171 7.31207 8.87802 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.021556 B = 0.004487 C = 0.003947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.613809 B = 6239.399439 C = 7092.342553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 S -0.319 6.319 3 C -0.051 4.051 4 C 0.080 3.920 5 H 0.052 0.948 6 C -0.109 4.109 7 C -0.135 4.135 8 C 0.034 3.966 9 N -0.529 5.529 10 C 0.060 3.940 11 C -0.097 4.097 12 C -0.093 4.093 13 C -0.009 4.009 14 C -0.535 4.535 15 H 0.028 0.972 16 C 0.002 3.998 17 N -0.953 5.953 18 Si 0.954 3.046 19 H -0.264 1.264 20 H -0.282 1.282 21 H -0.248 1.248 22 H 0.088 0.912 23 H 0.081 0.919 24 H 0.099 0.901 25 H 0.102 0.898 26 H 0.088 0.912 27 H 0.094 0.906 28 H 0.086 0.914 29 H 0.067 0.933 30 H 0.092 0.908 31 H 0.077 0.923 32 H 0.047 0.953 33 H 0.025 0.975 34 H 0.079 0.921 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.043 0.957 38 H 0.042 0.958 39 H 0.017 0.983 40 H 0.018 0.982 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.040 24.239 9.633 28.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.284 4.284 2 S -0.093 6.093 3 C -0.199 4.199 4 C -0.029 4.029 5 H 0.070 0.930 6 C -0.148 4.148 7 C -0.174 4.174 8 C -0.093 4.093 9 N -0.254 5.254 10 C -0.068 4.068 11 C -0.135 4.135 12 C -0.131 4.131 13 C -0.047 4.047 14 C -0.573 4.573 15 H 0.047 0.953 16 C -0.194 4.194 17 N -0.594 5.594 18 Si 0.777 3.223 19 H -0.189 1.189 20 H -0.207 1.207 21 H -0.172 1.172 22 H 0.107 0.893 23 H 0.100 0.900 24 H 0.117 0.883 25 H 0.120 0.880 26 H 0.106 0.894 27 H 0.112 0.888 28 H 0.105 0.895 29 H 0.086 0.914 30 H 0.111 0.889 31 H 0.096 0.904 32 H 0.066 0.934 33 H 0.043 0.957 34 H 0.097 0.903 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.035 0.965 40 H 0.036 0.964 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.727 23.201 9.164 27.154 hybrid contribution 0.047 0.158 -0.066 0.177 sum -10.680 23.359 9.098 27.248 Atomic orbital electron populations 1.23419 0.92685 1.06766 1.05518 1.87535 1.09590 1.14146 1.98078 1.23389 0.98465 0.92546 1.05539 1.22388 0.92562 0.96691 0.91256 0.92966 1.22712 0.96555 0.92941 1.02618 1.22770 0.97285 0.99314 0.98028 1.22908 0.92380 0.94180 0.99871 1.63439 1.30053 1.01600 1.30260 1.22301 0.98325 0.89568 0.96606 1.21430 1.00629 0.94492 0.96931 1.21276 0.99349 0.95159 0.97348 1.19513 0.95944 0.93796 0.95438 1.21550 1.43855 0.98083 0.93801 0.95335 1.26061 0.94073 0.95081 1.04180 1.70079 1.46859 1.10429 1.32040 0.85605 0.79960 0.78673 0.78108 1.18906 1.20723 1.17182 0.89281 0.90007 0.88275 0.87975 0.89380 0.88788 0.89526 0.91419 0.88932 0.90421 0.93427 0.95683 0.90283 0.92163 0.92291 0.93793 0.93884 0.96454 0.96408 0.92469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.92 10.76 113.37 1.22 -0.70 16 2 S -0.32 -7.67 19.46 -56.49 -1.10 -8.77 16 3 C -0.05 -0.91 5.65 71.98 0.41 -0.50 16 4 C 0.08 1.55 2.59 45.39 0.12 1.67 16 5 H 0.05 1.13 7.81 -2.39 -0.02 1.11 16 6 C -0.11 -1.43 6.50 31.98 0.21 -1.22 16 7 C -0.14 -1.99 6.94 31.78 0.22 -1.77 16 8 C 0.03 0.72 6.20 86.65 0.54 1.26 16 9 N -0.53 -12.93 4.72 -860.65 -4.06 -16.99 16 10 C 0.06 1.80 4.33 86.30 0.37 2.18 16 11 C -0.10 -3.34 5.24 30.59 0.16 -3.18 16 12 C -0.09 -3.98 5.15 30.60 0.16 -3.82 16 13 C -0.01 -0.48 4.04 29.85 0.12 -0.36 16 14 C -0.53 -32.75 9.66 25.60 0.25 -32.50 16 15 H 0.03 1.91 7.99 -2.91 -0.02 1.89 16 16 C 0.00 0.15 5.47 84.65 0.46 0.61 16 17 N -0.95 -62.03 13.96 21.45 0.30 -61.73 16 18 Si 0.95 46.13 27.47 68.60 1.88 48.02 16 19 H -0.26 -12.15 7.11 99.48 0.71 -11.44 16 20 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 21 H -0.25 -11.28 6.54 99.48 0.65 -10.62 16 22 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 23 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 24 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.09 1.01 8.06 -2.39 -0.02 0.99 16 29 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.05 1.11 6.92 -2.39 -0.02 1.10 16 33 H 0.02 0.76 7.96 -2.39 -0.02 0.74 16 34 H 0.08 2.54 5.24 -5.22 -0.03 2.51 16 35 H 0.06 2.14 8.14 -2.38 -0.02 2.12 16 36 H 0.06 1.94 7.14 -2.38 -0.02 1.92 16 37 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.02 0.86 7.20 -2.39 -0.02 0.84 16 40 H 0.02 0.85 7.57 -2.39 -0.02 0.84 16 41 H 0.27 16.07 8.31 -92.70 -0.77 15.30 16 Total: -1.00 -70.15 330.80 2.14 -68.01 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: 0.88 Total: 9.81 kcal Atomic # 6 Polarization: -42.58 SS G_CDS: 4.23 Total: -38.34 kcal Atomic # 7 Polarization: -74.96 SS G_CDS: -3.76 Total: -78.72 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 1.88 Total: 48.02 kcal Atomic # 16 Polarization: -7.67 SS G_CDS: -1.10 Total: -8.77 kcal Total: -70.15 2.14 -68.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385200527.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.307 kcal (2) G-P(sol) polarization free energy of solvation -70.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds