Wall clock time and date at job start Mon Mar 30 2020 06:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.81406 * 102.99939 * 2 1 4 4 H 1.09005 * 110.05105 * 306.41758 * 3 2 1 5 5 C 1.54265 * 110.03194 * 67.82984 * 3 2 1 6 6 C 1.54888 * 104.19322 * 142.89461 * 5 3 2 7 7 C 1.54884 * 102.75177 * 322.06365 * 6 5 3 8 8 C 1.53870 * 110.03267 * 185.00099 * 3 2 1 9 9 H 1.09005 * 110.06961 * 121.40798 * 8 3 2 10 10 N 1.46890 * 110.03507 * 359.97438 * 8 3 2 11 11 C 1.46901 * 111.00688 * 156.37980 * 10 8 3 12 12 C 1.52992 * 109.47859 * 180.02562 * 11 10 8 13 13 C 1.52997 * 109.47482 * 179.97438 * 12 11 10 14 14 C 1.53000 * 109.47060 * 180.02562 * 13 12 11 15 15 C 1.50706 * 109.46735 * 180.02562 * 14 13 12 16 16 H 1.07996 * 119.99928 * 359.97438 * 15 14 13 17 17 C 1.37880 * 119.99611 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00327 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99743 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46828 * 90.00241 * 19 17 15 21 21 H 1.48494 * 109.47178 * 209.99936 * 19 17 15 22 22 H 1.48500 * 109.47075 * 330.00183 * 19 17 15 23 23 H 1.09000 * 109.47120 * 300.00143 * 1 2 3 24 24 H 1.09003 * 109.47575 * 59.99948 * 1 2 3 25 25 H 1.08998 * 109.47084 * 180.02562 * 1 2 3 26 26 H 1.09000 * 110.48674 * 24.22167 * 5 3 2 27 27 H 1.09001 * 110.48937 * 261.57305 * 5 3 2 28 28 H 1.08999 * 110.75732 * 203.74345 * 6 5 3 29 29 H 1.09006 * 110.91232 * 80.44831 * 6 5 3 30 30 H 1.09008 * 110.48385 * 279.25984 * 7 6 5 31 31 H 1.08996 * 110.49346 * 156.62137 * 7 6 5 32 32 H 1.00905 * 111.00280 * 280.33966 * 10 8 3 33 33 H 1.09002 * 109.46980 * 59.99769 * 11 10 8 34 34 H 1.09001 * 109.46628 * 300.00190 * 11 10 8 35 35 H 1.09002 * 109.47103 * 59.99734 * 12 11 10 36 36 H 1.08998 * 109.46862 * 300.00546 * 12 11 10 37 37 H 1.09002 * 109.47153 * 59.99783 * 13 12 11 38 38 H 1.09001 * 109.46832 * 299.99974 * 13 12 11 39 39 H 1.09001 * 109.47194 * 299.99650 * 14 13 12 40 40 H 1.08992 * 109.47399 * 59.99823 * 14 13 12 41 41 H 0.97000 * 120.00354 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 1 1.7137 2.2685 -0.8240 5 6 1.8080 2.4055 1.3422 6 6 2.9274 3.4353 1.6345 7 6 4.2014 2.7038 1.1440 8 6 3.7438 1.9572 -0.1260 9 1 3.9748 2.5498 -1.0112 10 7 4.4087 0.6500 -0.2078 11 6 5.7158 0.7645 -0.8686 12 6 6.3760 -0.6140 -0.9355 13 6 7.7370 -0.4948 -1.6243 14 6 8.3970 -1.8735 -1.6917 15 6 9.7378 -1.7558 -2.3696 16 1 10.0843 -0.7941 -2.7178 17 6 10.5221 -2.8762 -2.5452 18 7 10.1003 -4.0473 -2.1207 19 14 12.1838 -2.7305 -3.3861 20 1 13.2315 -2.4612 -2.3686 21 1 12.4942 -3.9994 -4.0921 22 1 12.1467 -1.6151 -4.3657 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.7695 1.6506 2.1275 27 1 0.8447 2.9063 1.2455 28 1 2.9896 3.6456 2.7022 29 1 2.7679 4.3541 1.0701 30 1 4.5495 1.9971 1.8974 31 1 4.9848 3.4222 0.9027 32 1 4.5010 0.2334 0.7065 33 1 6.3511 1.4449 -0.3016 34 1 5.5796 1.1512 -1.8785 35 1 5.7405 -1.2941 -1.5027 36 1 6.5120 -1.0011 0.0743 37 1 8.3727 0.1855 -1.0574 38 1 7.6005 -0.1079 -2.6341 39 1 8.5335 -2.2608 -0.6820 40 1 7.7611 -2.5533 -2.2588 41 1 10.6522 -4.8354 -2.2439 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385201647.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:18 Heat of formation + Delta-G solvation = -32.325258 kcal Electronic energy + Delta-G solvation = -16859.564446 eV Core-core repulsion = 14285.126571 eV Total energy + Delta-G solvation = -2574.437875 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.91086 -35.67704 -33.62097 -31.88419 -29.49687 -28.88489 -28.34298 -26.42151 -23.97697 -21.41574 -21.13618 -20.53299 -19.77888 -16.62154 -16.45993 -16.06692 -15.29330 -14.95322 -14.46685 -14.21316 -14.02711 -13.73320 -13.51980 -13.30230 -12.83728 -12.42990 -12.21689 -11.98476 -11.57010 -11.48359 -11.40865 -11.21468 -11.06162 -10.98197 -10.92185 -10.49831 -10.42993 -10.36408 -9.66836 -9.56553 -9.19986 -8.94789 -8.28969 -8.25806 -7.47312 -5.93257 -3.95375 1.70565 2.67442 3.35574 3.41529 3.45179 4.15687 4.23520 4.35359 4.51628 4.75400 5.03336 5.06861 5.08879 5.12437 5.15705 5.28493 5.32984 5.42028 5.49873 5.54003 5.61622 5.62673 5.68531 5.75465 5.87571 5.98243 5.99543 6.23661 6.32933 6.58863 6.90377 7.03304 7.11043 7.29548 7.47137 7.76526 7.93264 8.08451 8.51077 9.12281 9.68164 11.18091 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.036180 B = 0.003248 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.730400 B = 8619.808249 C = 9187.132166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 S -0.177 6.177 3 C -0.063 4.063 4 H 0.084 0.916 5 C -0.122 4.122 6 C -0.119 4.119 7 C -0.152 4.152 8 C 0.104 3.896 9 H 0.087 0.913 10 N -0.674 5.674 11 C 0.062 3.938 12 C -0.115 4.115 13 C -0.108 4.108 14 C 0.021 3.979 15 C -0.520 4.520 16 H 0.054 0.946 17 C 0.055 3.945 18 N -0.896 5.896 19 Si 0.891 3.109 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 H 0.066 0.934 24 H 0.068 0.932 25 H 0.095 0.905 26 H 0.079 0.921 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.345 0.655 33 H 0.026 0.974 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.053 0.947 37 H 0.043 0.957 38 H 0.046 0.954 39 H 0.014 0.986 40 H 0.016 0.984 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.228 14.409 7.542 25.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.324 4.324 2 S 0.050 5.950 3 C -0.193 4.193 4 H 0.103 0.897 5 C -0.161 4.161 6 C -0.158 4.158 7 C -0.192 4.192 8 C -0.008 4.008 9 H 0.105 0.895 10 N -0.304 5.304 11 C -0.066 4.066 12 C -0.153 4.153 13 C -0.146 4.146 14 C -0.016 4.016 15 C -0.558 4.558 16 H 0.072 0.928 17 C -0.146 4.146 18 N -0.535 5.535 19 Si 0.719 3.281 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 H 0.085 0.915 24 H 0.087 0.913 25 H 0.114 0.886 26 H 0.098 0.902 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.165 0.835 33 H 0.044 0.956 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.072 0.928 37 H 0.062 0.938 38 H 0.065 0.935 39 H 0.032 0.968 40 H 0.034 0.966 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -18.827 13.116 6.929 23.969 hybrid contribution 0.553 1.513 0.196 1.623 sum -18.274 14.629 7.125 24.469 Atomic orbital electron populations 1.23578 0.99041 1.05851 1.03920 1.87596 1.01648 1.08190 1.97599 1.24000 0.99315 0.95872 1.00127 0.89725 1.22827 0.98463 0.98647 0.96192 1.22405 0.94538 0.97768 1.01089 1.23144 0.97955 1.00076 0.98016 1.21974 0.90615 0.90489 0.97736 0.89503 1.60379 1.22682 1.20586 1.26791 1.22086 0.87685 0.98391 0.98440 1.21622 0.97401 0.95166 1.01090 1.21582 0.93582 1.00957 0.98513 1.19090 0.94812 0.90722 0.96989 1.21299 1.02746 0.93883 1.37867 0.92815 1.25035 0.98181 0.95452 0.95886 1.69969 1.37619 0.98780 1.47170 0.86618 0.84438 0.77405 0.79677 1.20738 1.21242 1.19915 0.91454 0.91277 0.88602 0.90202 0.91697 0.91327 0.91417 0.91011 0.91259 0.83541 0.95590 0.91379 0.91517 0.92817 0.93794 0.93516 0.96754 0.96569 0.93073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 10.64 101.05 1.08 -0.25 16 2 S -0.18 -2.04 19.87 -107.50 -2.14 -4.17 16 3 C -0.06 -0.61 3.42 -25.62 -0.09 -0.70 16 4 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 5 C -0.12 -0.96 6.26 -25.07 -0.16 -1.11 16 6 C -0.12 -0.88 6.91 -24.74 -0.17 -1.05 16 7 C -0.15 -1.36 6.39 -25.08 -0.16 -1.52 16 8 C 0.10 1.08 3.22 -66.60 -0.21 0.87 16 9 H 0.09 0.92 7.83 -51.93 -0.41 0.51 16 10 N -0.67 -8.58 4.43 -105.56 -0.47 -9.05 16 11 C 0.06 0.89 5.51 -3.83 -0.02 0.87 16 12 C -0.11 -2.03 5.47 -26.74 -0.15 -2.17 16 13 C -0.11 -2.29 5.15 -26.73 -0.14 -2.43 16 14 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 15 C -0.52 -15.19 9.11 -34.44 -0.31 -15.50 16 16 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.90 -27.66 13.29 55.43 0.74 -26.93 16 19 Si 0.89 22.13 29.54 -169.99 -5.02 17.10 16 20 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 23 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 24 H 0.07 0.55 8.14 -51.92 -0.42 0.13 16 25 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.08 0.67 7.81 -51.93 -0.41 0.27 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.68 7.58 -51.92 -0.39 0.29 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.35 4.40 7.97 -39.29 -0.31 4.08 16 33 H 0.03 0.36 8.10 -51.93 -0.42 -0.06 16 34 H 0.07 0.99 8.07 -51.93 -0.42 0.57 16 35 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 39 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 338.36 15.07 5.10 5.10 Total: -1.00 -30.59 338.36 -10.18 -40.77 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -7.82 Total: -1.78 kcal Atomic # 6 Polarization: -20.47 SS G_CDS: -0.57 Total: -21.04 kcal Atomic # 7 Polarization: -36.25 SS G_CDS: 0.27 Total: -35.98 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.10 kcal Atomic # 16 Polarization: -2.04 SS G_CDS: -2.14 Total: -4.17 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.59 -10.18 -40.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385201647.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.442 kcal (2) G-P(sol) polarization free energy of solvation -30.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds