Wall clock time and date at job start Mon Mar 30 2020 06:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 C 1.81401 * 103.00253 * 2 1 4 4 H 1.09001 * 110.01260 * 53.60977 * 3 2 1 5 5 C 1.54269 * 110.07194 * 292.19315 * 3 2 1 6 6 C 1.54889 * 104.19633 * 217.08115 * 5 3 2 7 7 C 1.54894 * 102.74648 * 37.94347 * 6 5 3 8 8 C 1.53872 * 110.03293 * 175.00481 * 3 2 1 9 9 H 1.09002 * 110.02976 * 238.66892 * 8 3 2 10 10 N 1.46902 * 110.03053 * 0.04567 * 8 3 2 11 11 C 1.46896 * 111.00058 * 275.08678 * 10 8 3 12 12 C 1.53007 * 109.47159 * 180.02562 * 11 10 8 13 13 C 1.53005 * 109.46980 * 180.02562 * 12 11 10 14 14 C 1.53003 * 109.46531 * 179.97438 * 13 12 11 15 15 C 1.50697 * 109.46743 * 180.02562 * 14 13 12 16 16 H 1.08002 * 120.00022 * 359.97438 * 15 14 13 17 17 C 1.37875 * 120.00122 * 180.02562 * 15 14 13 18 18 N 1.31513 * 119.99677 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 120.00196 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47001 * 60.00183 * 19 17 15 21 21 H 1.48496 * 109.46887 * 299.99664 * 19 17 15 22 22 H 1.48500 * 109.46730 * 179.97438 * 19 17 15 23 23 H 1.09008 * 109.47063 * 299.99761 * 1 2 3 24 24 H 1.08998 * 109.47296 * 59.99718 * 1 2 3 25 25 H 1.08998 * 109.47407 * 179.97438 * 1 2 3 26 26 H 1.08997 * 110.48810 * 335.76443 * 5 3 2 27 27 H 1.09001 * 110.48611 * 98.27153 * 5 3 2 28 28 H 1.08992 * 110.75479 * 156.25766 * 6 5 3 29 29 H 1.09001 * 110.75616 * 279.44579 * 6 5 3 30 30 H 1.08995 * 110.48188 * 203.38060 * 7 6 5 31 31 H 1.09002 * 110.48465 * 80.73388 * 7 6 5 32 32 H 1.00894 * 110.99942 * 39.04231 * 10 8 3 33 33 H 1.08994 * 109.47372 * 60.00156 * 11 10 8 34 34 H 1.09003 * 109.47247 * 299.99736 * 11 10 8 35 35 H 1.08994 * 109.47279 * 59.99576 * 12 11 10 36 36 H 1.09003 * 109.46398 * 299.99732 * 12 11 10 37 37 H 1.08994 * 109.46811 * 59.99884 * 13 12 11 38 38 H 1.09002 * 109.46829 * 299.99411 * 13 12 11 39 39 H 1.09004 * 109.47005 * 60.00208 * 14 13 12 40 40 H 1.09000 * 109.47078 * 300.00131 * 14 13 12 41 41 H 0.96995 * 120.00527 * 359.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7140 2.2677 0.8245 5 6 1.8079 2.4065 -1.3416 6 6 2.9272 3.4366 -1.6333 7 6 4.2014 2.7047 -1.1436 8 6 3.7439 1.9571 0.1259 9 1 3.9744 2.5486 1.0120 10 7 4.4088 0.6497 0.2071 11 6 4.4234 0.1514 1.5889 12 6 5.1229 -1.2087 1.6333 13 6 5.1375 -1.7279 3.0725 14 6 5.8365 -3.0882 3.1167 15 6 5.8503 -3.5999 4.5340 16 1 5.4055 -3.0134 5.3243 17 6 6.4318 -4.8164 4.8221 18 7 6.9739 -5.5304 3.8599 19 14 6.4496 -5.4505 6.5792 20 1 5.0546 -5.5950 7.0674 21 1 7.1800 -4.4899 7.4446 22 1 7.1279 -6.7708 6.6221 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 1.7693 1.6523 -2.1276 27 1 0.8435 2.9052 -1.2451 28 1 2.9892 3.6478 -2.7008 29 1 2.7643 4.3545 -1.0683 30 1 4.9848 3.4230 -0.9018 31 1 4.5493 1.9986 -1.8976 32 1 3.9733 -0.0166 -0.4129 33 1 3.3997 0.0457 1.9479 34 1 4.9601 0.8565 2.2237 35 1 6.1466 -1.1026 1.2745 36 1 4.5865 -1.9139 0.9984 37 1 4.1136 -1.8340 3.4308 38 1 5.6736 -1.0227 3.7077 39 1 6.8604 -2.9824 2.7581 40 1 5.3001 -3.7931 2.4815 41 1 6.9643 -5.2014 2.9475 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385201672.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:21 Heat of formation + Delta-G solvation = -34.618574 kcal Electronic energy + Delta-G solvation = -17116.477202 eV Core-core repulsion = 14541.939881 eV Total energy + Delta-G solvation = -2574.537321 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.95441 -35.76917 -33.86533 -31.90068 -29.64633 -28.57050 -28.50095 -26.21677 -23.70441 -21.65440 -20.91938 -20.70725 -19.95735 -16.78560 -16.67137 -16.46359 -15.17219 -15.16722 -14.45310 -14.16090 -13.90363 -13.66705 -13.64133 -13.30804 -12.93026 -12.84969 -12.22961 -12.01550 -11.66834 -11.59888 -11.37397 -11.24512 -10.93274 -10.90677 -10.81103 -10.50252 -10.46510 -10.05677 -9.93896 -9.64770 -9.49629 -8.42549 -8.40602 -8.22818 -7.73433 -6.26501 -3.94370 1.42898 2.33857 3.48774 3.51486 3.70062 4.09091 4.18229 4.44273 4.62846 4.72102 4.90192 4.95110 5.03553 5.10316 5.17635 5.22667 5.35823 5.48774 5.50207 5.51276 5.56591 5.64549 5.69390 5.74730 5.91998 6.02269 6.06313 6.23511 6.31072 6.54695 6.83867 6.95473 7.04762 7.22508 7.46362 7.56219 7.70095 8.34641 8.57301 8.99522 9.77985 11.14318 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.034853 B = 0.003613 C = 0.003416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.180746 B = 7748.533938 C = 8194.471494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 S -0.235 6.235 3 C -0.099 4.099 4 H 0.086 0.914 5 C -0.118 4.118 6 C -0.123 4.123 7 C -0.111 4.111 8 C 0.104 3.896 9 H 0.087 0.913 10 N -0.675 5.675 11 C 0.054 3.946 12 C -0.113 4.113 13 C -0.100 4.100 14 C 0.008 3.992 15 C -0.600 4.600 16 H 0.047 0.953 17 C 0.012 3.988 18 N -0.916 5.916 19 Si 1.069 2.931 20 H -0.289 1.289 21 H -0.288 1.288 22 H -0.283 1.283 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.100 0.900 26 H 0.079 0.921 27 H 0.064 0.936 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.346 0.654 33 H 0.046 0.954 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.054 0.946 37 H 0.047 0.953 38 H 0.046 0.954 39 H 0.006 0.994 40 H 0.005 0.995 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.432 18.542 -11.567 25.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.302 4.302 2 S -0.008 6.008 3 C -0.230 4.230 4 H 0.105 0.895 5 C -0.157 4.157 6 C -0.162 4.162 7 C -0.149 4.149 8 C -0.009 4.009 9 H 0.105 0.895 10 N -0.310 5.310 11 C -0.075 4.075 12 C -0.151 4.151 13 C -0.138 4.138 14 C -0.029 4.029 15 C -0.639 4.639 16 H 0.065 0.935 17 C -0.191 4.191 18 N -0.552 5.552 19 Si 0.897 3.103 20 H -0.215 1.215 21 H -0.215 1.215 22 H -0.208 1.208 23 H 0.092 0.908 24 H 0.092 0.908 25 H 0.119 0.881 26 H 0.098 0.902 27 H 0.083 0.917 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.096 0.904 32 H 0.170 0.830 33 H 0.064 0.936 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.024 0.976 40 H 0.024 0.976 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.633 16.612 -10.556 22.370 hybrid contribution -2.467 2.081 -0.755 3.314 sum -13.099 18.693 -11.311 25.475 Atomic orbital electron populations 1.23472 0.95833 1.06412 1.04482 1.87095 1.06380 1.09795 1.97514 1.24763 1.02608 0.94381 1.01236 0.89535 1.22736 0.98643 0.98743 0.95599 1.22481 0.94755 0.97699 1.01242 1.22377 0.97013 0.98738 0.96781 1.22112 0.86753 0.92537 0.99461 0.89525 1.60791 1.56515 1.03996 1.09678 1.22228 0.99898 0.97179 0.88190 1.21595 1.00251 0.94338 0.98915 1.21431 1.00197 0.98809 0.93362 1.19218 0.94776 0.91604 0.97305 1.22103 1.41231 1.06771 0.93747 0.93483 1.25851 0.93589 0.93974 1.05721 1.70764 1.42613 1.39895 1.01967 0.83556 0.76287 0.76193 0.74255 1.21533 1.21501 1.20813 0.90759 0.90822 0.88133 0.90238 0.91729 0.91085 0.91431 0.91007 0.90443 0.82998 0.93578 0.91848 0.92111 0.92744 0.93446 0.93470 0.97593 0.97640 0.92097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.17 10.64 101.05 1.08 -0.09 16 2 S -0.23 -2.74 16.82 -107.50 -1.81 -4.55 16 3 C -0.10 -0.97 3.36 -25.61 -0.09 -1.05 16 4 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 5 C -0.12 -0.93 6.26 -25.07 -0.16 -1.09 16 6 C -0.12 -0.89 6.91 -24.74 -0.17 -1.06 16 7 C -0.11 -1.00 6.54 -25.07 -0.16 -1.16 16 8 C 0.10 1.12 3.22 -66.60 -0.21 0.90 16 9 H 0.09 0.94 7.86 -51.93 -0.41 0.53 16 10 N -0.68 -9.15 6.05 -105.55 -0.64 -9.78 16 11 C 0.05 0.83 4.97 -3.82 -0.02 0.81 16 12 C -0.11 -2.09 5.48 -26.73 -0.15 -2.23 16 13 C -0.10 -2.20 5.15 -26.73 -0.14 -2.34 16 14 C 0.01 0.22 4.28 -27.88 -0.12 0.10 16 15 C -0.60 -18.00 9.11 -34.44 -0.31 -18.31 16 16 H 0.05 1.38 7.74 -52.49 -0.41 0.98 16 17 C 0.01 0.36 5.46 -17.82 -0.10 0.26 16 18 N -0.92 -29.22 13.65 55.43 0.76 -28.46 16 19 Si 1.07 26.21 29.90 -169.99 -5.08 21.13 16 20 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 23 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16 24 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.10 0.85 8.14 -51.92 -0.42 0.43 16 26 H 0.08 0.68 7.81 -51.93 -0.41 0.27 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.08 0.77 8.05 -51.93 -0.42 0.35 16 32 H 0.35 4.83 6.23 -23.70 -0.15 4.68 16 33 H 0.05 0.72 6.53 -51.93 -0.34 0.38 16 34 H 0.06 0.97 8.07 -51.93 -0.42 0.55 16 35 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 39 H 0.01 0.16 8.01 -51.93 -0.42 -0.25 16 40 H 0.01 0.15 8.01 -51.93 -0.42 -0.26 16 41 H 0.27 8.56 7.22 -40.82 -0.29 8.26 16 LS Contribution 332.36 15.07 5.01 5.01 Total: -1.00 -31.81 332.36 -9.85 -41.67 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -7.54 Total: 0.26 kcal Atomic # 6 Polarization: -24.72 SS G_CDS: -0.55 Total: -25.27 kcal Atomic # 7 Polarization: -38.36 SS G_CDS: 0.12 Total: -38.25 kcal Atomic # 14 Polarization: 26.21 SS G_CDS: -5.08 Total: 21.13 kcal Atomic # 16 Polarization: -2.74 SS G_CDS: -1.81 Total: -4.55 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.81 -9.85 -41.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385201672.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.048 kcal (2) G-P(sol) polarization free energy of solvation -31.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds