Wall clock time and date at job start Mon Mar 30 2020 06:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 C 1.81401 * 103.00253 * 2 1 4 4 H 1.09001 * 110.01260 * 53.60977 * 3 2 1 5 5 C 1.54269 * 110.07194 * 292.19315 * 3 2 1 6 6 C 1.54889 * 104.19633 * 217.08115 * 5 3 2 7 7 C 1.54894 * 102.74648 * 37.94347 * 6 5 3 8 8 C 1.53872 * 110.03293 * 175.00481 * 3 2 1 9 9 H 1.09002 * 110.02976 * 238.66892 * 8 3 2 10 10 N 1.46902 * 110.03053 * 0.04567 * 8 3 2 11 11 C 1.46896 * 111.00058 * 275.08678 * 10 8 3 12 12 C 1.53007 * 109.47159 * 180.02562 * 11 10 8 13 13 C 1.53005 * 109.46980 * 180.02562 * 12 11 10 14 14 C 1.53003 * 109.46531 * 179.97438 * 13 12 11 15 15 C 1.50697 * 109.46743 * 180.02562 * 14 13 12 16 16 H 1.08002 * 120.00022 * 359.97438 * 15 14 13 17 17 C 1.37875 * 120.00122 * 180.02562 * 15 14 13 18 18 N 1.31513 * 119.99677 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 120.00196 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47001 * 60.00183 * 19 17 15 21 21 H 1.48496 * 109.46887 * 299.99664 * 19 17 15 22 22 H 1.48500 * 109.46730 * 179.97438 * 19 17 15 23 23 H 1.09008 * 109.47063 * 299.99761 * 1 2 3 24 24 H 1.08998 * 109.47296 * 59.99718 * 1 2 3 25 25 H 1.08998 * 109.47407 * 179.97438 * 1 2 3 26 26 H 1.08997 * 110.48810 * 335.76443 * 5 3 2 27 27 H 1.09001 * 110.48611 * 98.27153 * 5 3 2 28 28 H 1.08992 * 110.75479 * 156.25766 * 6 5 3 29 29 H 1.09001 * 110.75616 * 279.44579 * 6 5 3 30 30 H 1.08995 * 110.48188 * 203.38060 * 7 6 5 31 31 H 1.09002 * 110.48465 * 80.73388 * 7 6 5 32 32 H 1.00894 * 110.99942 * 39.04231 * 10 8 3 33 33 H 1.08994 * 109.47372 * 60.00156 * 11 10 8 34 34 H 1.09003 * 109.47247 * 299.99736 * 11 10 8 35 35 H 1.08994 * 109.47279 * 59.99576 * 12 11 10 36 36 H 1.09003 * 109.46398 * 299.99732 * 12 11 10 37 37 H 1.08994 * 109.46811 * 59.99884 * 13 12 11 38 38 H 1.09002 * 109.46829 * 299.99411 * 13 12 11 39 39 H 1.09004 * 109.47005 * 60.00208 * 14 13 12 40 40 H 1.09000 * 109.47078 * 300.00131 * 14 13 12 41 41 H 0.96995 * 120.00527 * 359.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7140 2.2677 0.8245 5 6 1.8079 2.4065 -1.3416 6 6 2.9272 3.4366 -1.6333 7 6 4.2014 2.7047 -1.1436 8 6 3.7439 1.9571 0.1259 9 1 3.9744 2.5486 1.0120 10 7 4.4088 0.6497 0.2071 11 6 4.4234 0.1514 1.5889 12 6 5.1229 -1.2087 1.6333 13 6 5.1375 -1.7279 3.0725 14 6 5.8365 -3.0882 3.1167 15 6 5.8503 -3.5999 4.5340 16 1 5.4055 -3.0134 5.3243 17 6 6.4318 -4.8164 4.8221 18 7 6.9739 -5.5304 3.8599 19 14 6.4496 -5.4505 6.5792 20 1 5.0546 -5.5950 7.0674 21 1 7.1800 -4.4899 7.4446 22 1 7.1279 -6.7708 6.6221 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 1.7693 1.6523 -2.1276 27 1 0.8435 2.9052 -1.2451 28 1 2.9892 3.6478 -2.7008 29 1 2.7643 4.3545 -1.0683 30 1 4.9848 3.4230 -0.9018 31 1 4.5493 1.9986 -1.8976 32 1 3.9733 -0.0166 -0.4129 33 1 3.3997 0.0457 1.9479 34 1 4.9601 0.8565 2.2237 35 1 6.1466 -1.1026 1.2745 36 1 4.5865 -1.9139 0.9984 37 1 4.1136 -1.8340 3.4308 38 1 5.6736 -1.0227 3.7077 39 1 6.8604 -2.9824 2.7581 40 1 5.3001 -3.7931 2.4815 41 1 6.9643 -5.2014 2.9475 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385201672.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:20 Heat of formation + Delta-G solvation = -53.138064 kcal Electronic energy + Delta-G solvation = -17117.280267 eV Core-core repulsion = 14541.939881 eV Total energy + Delta-G solvation = -2575.340386 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.79499 -37.26529 -35.63083 -33.66428 -30.41073 -30.05182 -29.19999 -27.55018 -25.56985 -23.25443 -22.14740 -21.61675 -21.17110 -18.87526 -17.60195 -17.50401 -16.48069 -16.01472 -15.70062 -15.53976 -15.20466 -14.91532 -14.83879 -14.41773 -14.32821 -13.86416 -13.77126 -13.34488 -12.98191 -12.66914 -12.47358 -12.32958 -12.23449 -12.11755 -12.00692 -11.94376 -11.89140 -11.57458 -11.48187 -11.42913 -10.73911 -10.61239 -10.54668 -9.46095 -8.69981 -8.65022 -6.40101 0.64298 1.51566 1.57991 1.61218 1.80669 2.57250 3.15235 3.16015 3.47798 3.61608 4.01187 4.06893 4.18434 4.26525 4.28572 4.36464 4.37911 4.41779 4.46301 4.51178 4.61884 4.72312 4.75786 4.83092 4.86124 4.94794 4.98994 5.11101 5.12669 5.14055 5.20864 5.24480 5.41719 5.47932 5.57300 6.00730 6.07792 6.18314 6.37288 6.57030 7.43015 8.70708 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.034853 B = 0.003613 C = 0.003416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.180746 B = 7748.533938 C = 8194.471494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 S -0.303 6.303 3 C -0.084 4.084 4 H 0.091 0.909 5 C -0.112 4.112 6 C -0.114 4.114 7 C -0.109 4.109 8 C 0.097 3.903 9 H 0.088 0.912 10 N -0.682 5.682 11 C 0.069 3.931 12 C -0.101 4.101 13 C -0.087 4.087 14 C 0.008 3.992 15 C -0.621 4.621 16 H 0.051 0.949 17 C -0.043 4.043 18 N -0.939 5.939 19 Si 1.121 2.879 20 H -0.268 1.268 21 H -0.267 1.267 22 H -0.282 1.282 23 H 0.081 0.919 24 H 0.089 0.911 25 H 0.101 0.899 26 H 0.072 0.928 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.343 0.657 33 H 0.045 0.955 34 H 0.067 0.933 35 H 0.052 0.948 36 H 0.046 0.954 37 H 0.048 0.952 38 H 0.051 0.949 39 H -0.014 1.014 40 H -0.016 1.016 41 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.707 20.358 -11.076 26.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.286 4.286 2 S -0.076 6.076 3 C -0.215 4.215 4 H 0.110 0.890 5 C -0.152 4.152 6 C -0.153 4.153 7 C -0.147 4.147 8 C -0.014 4.014 9 H 0.106 0.894 10 N -0.316 5.316 11 C -0.061 4.061 12 C -0.139 4.139 13 C -0.125 4.125 14 C -0.029 4.029 15 C -0.659 4.659 16 H 0.070 0.930 17 C -0.240 4.240 18 N -0.576 5.576 19 Si 0.941 3.059 20 H -0.193 1.193 21 H -0.192 1.192 22 H -0.207 1.207 23 H 0.100 0.900 24 H 0.108 0.892 25 H 0.119 0.881 26 H 0.091 0.909 27 H 0.099 0.901 28 H 0.101 0.899 29 H 0.099 0.901 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.167 0.833 33 H 0.064 0.936 34 H 0.085 0.915 35 H 0.071 0.929 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.004 0.996 40 H 0.003 0.997 41 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -11.922 18.465 -10.089 24.184 hybrid contribution -2.085 1.528 -0.962 2.758 sum -14.007 19.994 -11.050 26.796 Atomic orbital electron populations 1.23461 0.92669 1.06861 1.05641 1.87321 1.09946 1.12671 1.97687 1.24712 1.01691 0.92445 1.02631 0.89010 1.22704 0.99706 0.98652 0.94122 1.22463 0.93057 0.97613 1.02178 1.22357 0.98224 0.98561 0.95560 1.22261 0.87534 0.91101 1.00518 0.89387 1.60769 1.57470 1.05071 1.08249 1.21966 0.99281 0.95168 0.89657 1.21406 1.00169 0.96131 0.96194 1.21252 0.99392 0.96019 0.95875 1.19189 0.93918 0.94027 0.95805 1.22551 1.41146 1.07255 0.94959 0.93043 1.27575 0.92462 0.94463 1.09479 1.70909 1.44326 1.40581 1.01783 0.82912 0.77697 0.76003 0.69309 1.19289 1.19206 1.20743 0.90035 0.89159 0.88076 0.90930 0.90085 0.89861 0.90127 0.90403 0.91595 0.83301 0.93642 0.91480 0.92896 0.93553 0.93336 0.93066 0.99585 0.99744 0.93685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.88 10.64 113.37 1.21 -0.67 16 2 S -0.30 -6.90 16.82 -56.49 -0.95 -7.85 16 3 C -0.08 -1.50 3.36 31.32 0.11 -1.40 16 4 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 5 C -0.11 -1.50 6.26 31.67 0.20 -1.30 16 6 C -0.11 -1.33 6.91 31.89 0.22 -1.11 16 7 C -0.11 -1.78 6.54 31.67 0.21 -1.57 16 8 C 0.10 1.97 3.22 45.64 0.15 2.12 16 9 H 0.09 1.76 7.86 -2.39 -0.02 1.74 16 10 N -0.68 -18.16 6.05 -487.84 -2.95 -21.11 16 11 C 0.07 2.08 4.97 86.31 0.43 2.51 16 12 C -0.10 -3.79 5.48 30.60 0.17 -3.62 16 13 C -0.09 -3.89 5.15 30.60 0.16 -3.73 16 14 C 0.01 0.43 4.28 29.85 0.13 0.56 16 15 C -0.62 -37.62 9.11 25.60 0.23 -37.39 16 16 H 0.05 3.00 7.74 -2.91 -0.02 2.98 16 17 C -0.04 -2.62 5.46 84.65 0.46 -2.16 16 18 N -0.94 -61.02 13.65 21.45 0.29 -60.73 16 19 Si 1.12 52.01 29.90 68.60 2.05 54.06 16 20 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 21 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 22 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 23 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 24 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.07 1.10 7.81 -2.39 -0.02 1.08 16 27 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.07 1.24 8.05 -2.39 -0.02 1.22 16 32 H 0.34 9.62 6.23 -99.62 -0.62 9.00 16 33 H 0.05 1.39 6.53 -2.39 -0.02 1.38 16 34 H 0.07 1.98 8.07 -2.39 -0.02 1.96 16 35 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 39 H -0.01 -0.84 8.01 -2.38 -0.02 -0.86 16 40 H -0.02 -0.94 8.01 -2.39 -0.02 -0.96 16 41 H 0.25 16.80 7.22 -92.71 -0.67 16.13 16 Total: -1.00 -69.00 332.36 2.55 -66.45 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: 0.44 Total: 16.94 kcal Atomic # 6 Polarization: -51.43 SS G_CDS: 3.66 Total: -47.77 kcal Atomic # 7 Polarization: -79.19 SS G_CDS: -2.66 Total: -81.84 kcal Atomic # 14 Polarization: 52.01 SS G_CDS: 2.05 Total: 54.06 kcal Atomic # 16 Polarization: -6.90 SS G_CDS: -0.95 Total: -7.85 kcal Total: -69.00 2.55 -66.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385201672.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.316 kcal (2) G-P(sol) polarization free energy of solvation -69.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds