Wall clock time and date at job start Mon Mar 30 2020 06:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81403 * 102.99948 * 2 1 4 4 H 1.09003 * 110.53658 * 307.61391 * 3 2 1 5 5 C 1.54964 * 110.53032 * 70.24255 * 3 2 1 6 6 C 1.54884 * 102.77635 * 156.56993 * 5 3 2 7 7 C 1.54267 * 104.19754 * 322.08238 * 6 5 3 8 8 C 1.53876 * 106.59343 * 23.61115 * 7 6 5 9 9 H 1.09002 * 110.03137 * 240.66365 * 8 7 6 10 10 N 1.46905 * 110.02993 * 119.28686 * 8 7 6 11 11 C 1.46902 * 110.99800 * 87.09026 * 10 8 7 12 12 C 1.53006 * 109.46626 * 180.02562 * 11 10 8 13 13 C 1.52999 * 109.46623 * 179.97438 * 12 11 10 14 14 C 1.53006 * 109.46997 * 179.97438 * 13 12 11 15 15 C 1.50699 * 109.47240 * 180.02562 * 14 13 12 16 16 H 1.08003 * 119.99962 * 0.02562 * 15 14 13 17 17 C 1.37873 * 119.99861 * 179.97438 * 15 14 13 18 18 N 1.31522 * 120.00243 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99980 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46921 * 60.00420 * 19 17 15 21 21 H 1.48506 * 109.46938 * 180.02562 * 19 17 15 22 22 H 1.48490 * 109.47056 * 300.00305 * 19 17 15 23 23 H 1.09006 * 109.46912 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47243 * 299.99895 * 1 2 3 25 25 H 1.08997 * 109.47177 * 60.00026 * 1 2 3 26 26 H 1.09003 * 110.72070 * 38.24916 * 5 3 2 27 27 H 1.09001 * 110.92610 * 274.97742 * 5 3 2 28 28 H 1.09004 * 110.48427 * 203.40597 * 6 5 3 29 29 H 1.08996 * 110.48734 * 80.76432 * 6 5 3 30 30 H 1.08998 * 110.03189 * 264.32730 * 7 6 5 31 31 H 1.08996 * 110.07478 * 142.91534 * 7 6 5 32 32 H 1.00898 * 110.99743 * 211.03977 * 10 8 7 33 33 H 1.08993 * 109.47737 * 60.00169 * 11 10 8 34 34 H 1.09000 * 109.47263 * 299.99731 * 11 10 8 35 35 H 1.09000 * 109.47050 * 299.99824 * 12 11 10 36 36 H 1.09001 * 109.46801 * 59.99937 * 12 11 10 37 37 H 1.09000 * 109.47486 * 299.99829 * 13 12 11 38 38 H 1.09001 * 109.47362 * 60.00551 * 13 12 11 39 39 H 1.09000 * 109.46866 * 300.00212 * 14 13 12 40 40 H 1.08996 * 109.47261 * 59.99820 * 14 13 12 41 41 H 0.96992 * 120.00032 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7011 2.2803 -0.8086 5 6 1.8663 2.4074 1.3658 6 6 2.7905 3.6494 1.4133 7 6 4.1078 3.1656 0.7725 8 6 3.7461 1.9698 -0.1259 9 1 4.2706 1.0763 0.2127 10 7 4.1013 2.2630 -1.5209 11 6 5.4978 1.8996 -1.7961 12 6 5.8299 2.2194 -3.2550 13 6 7.2846 1.8415 -3.5415 14 6 7.6166 2.1607 -5.0006 15 6 9.0492 1.7879 -5.2829 16 1 9.6615 1.3651 -4.5001 17 6 9.5778 1.9855 -6.5408 18 7 8.8320 2.4999 -7.4943 19 14 11.3538 1.5241 -6.8907 20 1 11.5456 0.0721 -6.6451 21 1 11.6760 1.8338 -8.3069 22 1 12.2518 2.2999 -5.9982 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 2.0954 1.7238 2.1833 27 1 0.8180 2.7047 1.3952 28 1 2.9594 3.9600 2.4444 29 1 2.3617 4.4665 0.8331 30 1 4.8070 2.8522 1.5477 31 1 4.5475 3.9630 0.1736 32 1 3.4739 1.7972 -2.1593 33 1 5.6381 0.8337 -1.6164 34 1 6.1572 2.4684 -1.1406 35 1 5.1705 1.6509 -3.9108 36 1 5.6897 3.2854 -3.4343 37 1 7.9437 2.4103 -2.8857 38 1 7.4251 0.7755 -3.3622 39 1 6.9574 1.5915 -5.6561 40 1 7.4759 3.2265 -5.1804 41 1 9.2041 2.6393 -8.3791 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385201673.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:23 Heat of formation + Delta-G solvation = -36.302384 kcal Electronic energy + Delta-G solvation = -16733.453254 eV Core-core repulsion = 14158.842918 eV Total energy + Delta-G solvation = -2574.610336 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.81671 -35.71245 -33.63784 -31.89199 -29.64910 -28.94959 -28.47419 -26.45126 -24.02035 -21.70833 -20.95154 -20.21001 -19.74207 -17.06420 -16.49667 -16.07639 -15.23985 -14.95645 -14.59886 -14.32527 -14.12621 -13.88506 -13.65328 -13.44100 -12.92482 -12.39107 -12.22290 -11.97442 -11.72856 -11.48840 -11.34916 -11.21135 -11.10441 -10.94592 -10.73890 -10.48820 -10.47234 -10.37594 -10.11569 -9.58168 -9.21369 -8.97182 -8.39912 -8.28790 -7.95901 -5.94283 -3.96456 1.40291 2.27729 3.36720 3.40649 3.43444 4.08792 4.15176 4.41041 4.50906 4.75838 4.81261 4.84651 5.08693 5.11493 5.16247 5.31794 5.35447 5.40909 5.43647 5.48208 5.57724 5.64648 5.77704 5.80430 5.96225 6.03719 6.09452 6.20993 6.32243 6.56691 6.87416 7.00943 7.08437 7.27345 7.42294 7.74790 7.91337 8.07093 8.49941 9.10939 9.67158 11.17090 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.036126 B = 0.003047 C = 0.002920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.889289 B = 9187.960471 C = 9586.781005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 S -0.263 6.263 3 C -0.061 4.061 4 H 0.100 0.900 5 C -0.116 4.116 6 C -0.118 4.118 7 C -0.113 4.113 8 C 0.106 3.894 9 H 0.055 0.945 10 N -0.682 5.682 11 C 0.059 3.941 12 C -0.115 4.115 13 C -0.109 4.109 14 C 0.022 3.978 15 C -0.520 4.520 16 H 0.053 0.947 17 C 0.055 3.945 18 N -0.897 5.897 19 Si 0.891 3.109 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 H 0.099 0.901 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.079 0.921 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.083 0.917 32 H 0.342 0.658 33 H 0.028 0.972 34 H 0.069 0.931 35 H 0.054 0.946 36 H 0.064 0.936 37 H 0.047 0.953 38 H 0.044 0.956 39 H 0.014 0.986 40 H 0.015 0.985 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.519 -0.820 18.744 25.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S -0.034 6.034 3 C -0.191 4.191 4 H 0.118 0.882 5 C -0.155 4.155 6 C -0.157 4.157 7 C -0.152 4.152 8 C -0.006 4.006 9 H 0.073 0.927 10 N -0.314 5.314 11 C -0.069 4.069 12 C -0.153 4.153 13 C -0.147 4.147 14 C -0.015 4.015 15 C -0.559 4.559 16 H 0.072 0.928 17 C -0.145 4.145 18 N -0.536 5.536 19 Si 0.719 3.281 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 H 0.118 0.882 24 H 0.094 0.906 25 H 0.095 0.905 26 H 0.098 0.902 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.101 0.899 32 H 0.160 0.840 33 H 0.046 0.954 34 H 0.087 0.913 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.033 0.967 40 H 0.034 0.966 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -16.709 -1.033 18.650 25.061 hybrid contribution 0.027 -0.268 -0.407 0.488 sum -16.682 -1.301 18.243 24.754 Atomic orbital electron populations 1.23358 0.94370 1.06357 1.04874 1.87028 1.07305 1.11247 1.97848 1.24328 1.00096 0.93013 1.01622 0.88217 1.22830 0.99701 0.97591 0.95424 1.22317 0.95464 0.97181 1.00781 1.22208 0.97251 0.97883 0.97906 1.21929 0.90976 0.97133 0.90515 0.92748 1.60781 1.04836 1.63236 1.02524 1.22123 0.88294 0.97947 0.98568 1.21630 0.98474 1.01819 0.93340 1.21589 0.92875 0.99654 1.00583 1.19084 0.96089 0.96841 0.89535 1.21264 0.97246 1.41391 0.95972 0.92829 1.25033 0.97717 0.95380 0.96396 1.69961 1.36153 1.44802 1.02707 0.86671 0.85314 0.78947 0.77141 1.20277 1.21306 1.20268 0.88243 0.90560 0.90478 0.90227 0.91445 0.91391 0.91254 0.91788 0.89871 0.84001 0.95417 0.91259 0.92743 0.91698 0.93468 0.93678 0.96745 0.96634 0.93012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.84 10.72 101.05 1.08 0.24 16 2 S -0.26 -2.67 21.63 -107.50 -2.33 -5.00 16 3 C -0.06 -0.58 2.79 -25.04 -0.07 -0.65 16 4 H 0.10 0.96 7.97 -51.93 -0.41 0.55 16 5 C -0.12 -0.90 6.30 -24.70 -0.16 -1.06 16 6 C -0.12 -0.95 6.83 -25.07 -0.17 -1.12 16 7 C -0.11 -1.12 6.52 -25.61 -0.17 -1.29 16 8 C 0.11 1.17 2.83 -66.60 -0.19 0.98 16 9 H 0.05 0.67 7.47 -51.93 -0.39 0.29 16 10 N -0.68 -8.71 6.16 -105.54 -0.65 -9.36 16 11 C 0.06 0.87 5.51 -3.82 -0.02 0.85 16 12 C -0.11 -2.01 5.48 -26.73 -0.15 -2.16 16 13 C -0.11 -2.31 5.15 -26.73 -0.14 -2.45 16 14 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 15 C -0.52 -15.21 9.11 -34.44 -0.31 -15.52 16 16 H 0.05 1.52 7.74 -52.48 -0.41 1.11 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 18 N -0.90 -27.62 13.29 55.43 0.74 -26.89 16 19 Si 0.89 22.12 29.54 -169.99 -5.02 17.10 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 H 0.10 0.61 8.14 -51.92 -0.42 0.19 16 24 H 0.08 0.45 8.14 -51.92 -0.42 0.03 16 25 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.08 0.63 8.05 -51.93 -0.42 0.22 16 27 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.08 0.93 7.92 -51.93 -0.41 0.52 16 32 H 0.34 4.31 8.34 -39.29 -0.33 3.98 16 33 H 0.03 0.41 8.07 -51.93 -0.42 -0.01 16 34 H 0.07 1.01 8.12 -51.93 -0.42 0.59 16 35 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 39 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 341.44 15.07 5.15 5.15 Total: -1.00 -30.54 341.44 -10.48 -41.02 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -7.84 Total: -1.82 kcal Atomic # 6 Polarization: -19.67 SS G_CDS: -0.52 Total: -20.20 kcal Atomic # 7 Polarization: -36.34 SS G_CDS: 0.09 Total: -36.25 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Atomic # 16 Polarization: -2.67 SS G_CDS: -2.33 Total: -5.00 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.54 -10.48 -41.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385201673.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.717 kcal (2) G-P(sol) polarization free energy of solvation -30.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds