Wall clock time and date at job start Mon Mar 30 2020 06:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81403 * 102.99948 * 2 1 4 4 H 1.09003 * 110.53658 * 307.61391 * 3 2 1 5 5 C 1.54964 * 110.53032 * 70.24255 * 3 2 1 6 6 C 1.54884 * 102.77635 * 156.56993 * 5 3 2 7 7 C 1.54267 * 104.19754 * 322.08238 * 6 5 3 8 8 C 1.53876 * 106.59343 * 23.61115 * 7 6 5 9 9 H 1.09002 * 110.03137 * 240.66365 * 8 7 6 10 10 N 1.46905 * 110.02993 * 119.28686 * 8 7 6 11 11 C 1.46902 * 110.99800 * 87.09026 * 10 8 7 12 12 C 1.53006 * 109.46626 * 180.02562 * 11 10 8 13 13 C 1.52999 * 109.46623 * 179.97438 * 12 11 10 14 14 C 1.53006 * 109.46997 * 179.97438 * 13 12 11 15 15 C 1.50699 * 109.47240 * 180.02562 * 14 13 12 16 16 H 1.08003 * 119.99962 * 0.02562 * 15 14 13 17 17 C 1.37873 * 119.99861 * 179.97438 * 15 14 13 18 18 N 1.31522 * 120.00243 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99980 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46921 * 60.00420 * 19 17 15 21 21 H 1.48506 * 109.46938 * 180.02562 * 19 17 15 22 22 H 1.48490 * 109.47056 * 300.00305 * 19 17 15 23 23 H 1.09006 * 109.46912 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47243 * 299.99895 * 1 2 3 25 25 H 1.08997 * 109.47177 * 60.00026 * 1 2 3 26 26 H 1.09003 * 110.72070 * 38.24916 * 5 3 2 27 27 H 1.09001 * 110.92610 * 274.97742 * 5 3 2 28 28 H 1.09004 * 110.48427 * 203.40597 * 6 5 3 29 29 H 1.08996 * 110.48734 * 80.76432 * 6 5 3 30 30 H 1.08998 * 110.03189 * 264.32730 * 7 6 5 31 31 H 1.08996 * 110.07478 * 142.91534 * 7 6 5 32 32 H 1.00898 * 110.99743 * 211.03977 * 10 8 7 33 33 H 1.08993 * 109.47737 * 60.00169 * 11 10 8 34 34 H 1.09000 * 109.47263 * 299.99731 * 11 10 8 35 35 H 1.09000 * 109.47050 * 299.99824 * 12 11 10 36 36 H 1.09001 * 109.46801 * 59.99937 * 12 11 10 37 37 H 1.09000 * 109.47486 * 299.99829 * 13 12 11 38 38 H 1.09001 * 109.47362 * 60.00551 * 13 12 11 39 39 H 1.09000 * 109.46866 * 300.00212 * 14 13 12 40 40 H 1.08996 * 109.47261 * 59.99820 * 14 13 12 41 41 H 0.96992 * 120.00032 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7011 2.2803 -0.8086 5 6 1.8663 2.4074 1.3658 6 6 2.7905 3.6494 1.4133 7 6 4.1078 3.1656 0.7725 8 6 3.7461 1.9698 -0.1259 9 1 4.2706 1.0763 0.2127 10 7 4.1013 2.2630 -1.5209 11 6 5.4978 1.8996 -1.7961 12 6 5.8299 2.2194 -3.2550 13 6 7.2846 1.8415 -3.5415 14 6 7.6166 2.1607 -5.0006 15 6 9.0492 1.7879 -5.2829 16 1 9.6615 1.3651 -4.5001 17 6 9.5778 1.9855 -6.5408 18 7 8.8320 2.4999 -7.4943 19 14 11.3538 1.5241 -6.8907 20 1 11.5456 0.0721 -6.6451 21 1 11.6760 1.8338 -8.3069 22 1 12.2518 2.2999 -5.9982 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 2.0954 1.7238 2.1833 27 1 0.8180 2.7047 1.3952 28 1 2.9594 3.9600 2.4444 29 1 2.3617 4.4665 0.8331 30 1 4.8070 2.8522 1.5477 31 1 4.5475 3.9630 0.1736 32 1 3.4739 1.7972 -2.1593 33 1 5.6381 0.8337 -1.6164 34 1 6.1572 2.4684 -1.1406 35 1 5.1705 1.6509 -3.9108 36 1 5.6897 3.2854 -3.4343 37 1 7.9437 2.4103 -2.8857 38 1 7.4251 0.7755 -3.3622 39 1 6.9574 1.5915 -5.6561 40 1 7.4759 3.2265 -5.1804 41 1 9.2041 2.6393 -8.3791 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385201673.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:23 Heat of formation + Delta-G solvation = -53.442906 kcal Electronic energy + Delta-G solvation = -16734.196523 eV Core-core repulsion = 14158.842918 eV Total energy + Delta-G solvation = -2575.353605 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.66975 -37.11452 -35.37545 -33.67373 -30.39689 -30.28655 -29.24280 -27.76597 -25.72557 -23.08391 -22.09039 -21.54497 -20.78451 -18.44400 -17.85741 -17.32408 -16.55020 -16.38047 -15.84067 -15.58320 -14.95689 -14.76745 -14.59295 -14.22719 -14.08857 -14.04826 -13.73664 -13.35058 -12.86365 -12.81489 -12.57408 -12.50777 -12.22746 -12.15348 -12.04246 -11.95178 -11.93755 -11.44248 -11.37885 -11.31320 -10.97861 -10.82395 -10.55093 -9.45054 -8.73361 -8.19897 -6.31654 0.70903 1.39169 1.42872 1.50816 1.61579 2.40913 3.10743 3.12560 3.40133 3.64951 4.01562 4.09715 4.19814 4.30829 4.33448 4.36839 4.39519 4.45484 4.52467 4.57033 4.66915 4.71518 4.81212 4.87521 4.92669 4.99266 5.04459 5.16389 5.23265 5.25481 5.28995 5.34529 5.41619 5.54344 5.77365 5.86428 6.06301 6.25558 6.37726 6.85604 7.37600 8.91889 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.036126 B = 0.003047 C = 0.002920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.889289 B = 9187.960471 C = 9586.781005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 S -0.317 6.317 3 C -0.049 4.049 4 H 0.098 0.902 5 C -0.108 4.108 6 C -0.113 4.113 7 C -0.114 4.114 8 C 0.104 3.896 9 H 0.041 0.959 10 N -0.682 5.682 11 C 0.073 3.927 12 C -0.103 4.103 13 C -0.097 4.097 14 C 0.024 3.976 15 C -0.547 4.547 16 H 0.060 0.940 17 C -0.003 4.003 18 N -0.935 5.935 19 Si 0.967 3.033 20 H -0.267 1.267 21 H -0.282 1.282 22 H -0.266 1.266 23 H 0.107 0.893 24 H 0.090 0.910 25 H 0.082 0.918 26 H 0.079 0.921 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.342 0.658 33 H 0.026 0.974 34 H 0.072 0.928 35 H 0.051 0.949 36 H 0.058 0.942 37 H 0.051 0.949 38 H 0.047 0.953 39 H -0.011 1.011 40 H -0.010 1.010 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.808 -0.941 20.197 26.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.276 4.276 2 S -0.089 6.089 3 C -0.178 4.178 4 H 0.117 0.883 5 C -0.148 4.148 6 C -0.152 4.152 7 C -0.153 4.153 8 C -0.007 4.007 9 H 0.059 0.941 10 N -0.314 5.314 11 C -0.057 4.057 12 C -0.141 4.141 13 C -0.135 4.135 14 C -0.013 4.013 15 C -0.585 4.585 16 H 0.078 0.922 17 C -0.200 4.200 18 N -0.575 5.575 19 Si 0.791 3.209 20 H -0.191 1.191 21 H -0.207 1.207 22 H -0.191 1.191 23 H 0.126 0.874 24 H 0.109 0.891 25 H 0.101 0.899 26 H 0.098 0.902 27 H 0.103 0.897 28 H 0.101 0.899 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.160 0.840 33 H 0.044 0.956 34 H 0.091 0.909 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.007 0.993 40 H 0.008 0.992 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -17.009 -1.154 20.124 26.375 hybrid contribution 0.060 -0.231 -0.880 0.911 sum -16.949 -1.385 19.244 25.681 Atomic orbital electron populations 1.23400 0.91012 1.07277 1.05902 1.87217 1.11106 1.12586 1.98000 1.24238 0.98674 0.92216 1.02712 0.88349 1.22805 1.00661 0.97168 0.94159 1.22299 0.94206 0.97188 1.01496 1.22207 0.98509 0.96905 0.97697 1.21989 0.92232 0.97131 0.89335 0.94095 1.60764 1.03730 1.63166 1.03726 1.21872 0.89677 0.97839 0.96268 1.21446 0.95972 1.01229 0.95492 1.21400 0.95376 0.99858 0.96883 1.19008 0.94983 0.94684 0.92637 1.21724 0.98463 1.41723 0.96591 0.92226 1.26028 1.02852 0.95027 0.96105 1.70099 1.38465 1.45677 1.03236 0.85482 0.79108 0.79117 0.77238 1.19141 1.20691 1.19073 0.87394 0.89066 0.89870 0.90221 0.89718 0.89861 0.91098 0.91341 0.91206 0.83970 0.95573 0.90928 0.93031 0.92340 0.92982 0.93376 0.99293 0.99151 0.92736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.29 10.72 113.37 1.22 -0.07 16 2 S -0.32 -6.17 21.63 -56.49 -1.22 -7.40 16 3 C -0.05 -0.87 2.79 31.69 0.09 -0.78 16 4 H 0.10 1.76 7.97 -2.39 -0.02 1.74 16 5 C -0.11 -1.44 6.30 31.91 0.20 -1.24 16 6 C -0.11 -1.56 6.83 31.67 0.22 -1.34 16 7 C -0.11 -2.11 6.52 31.32 0.20 -1.91 16 8 C 0.10 2.22 2.83 45.64 0.13 2.35 16 9 H 0.04 1.00 7.47 -2.39 -0.02 0.98 16 10 N -0.68 -17.10 6.16 -487.83 -3.00 -20.10 16 11 C 0.07 2.10 5.51 86.31 0.48 2.57 16 12 C -0.10 -3.66 5.48 30.60 0.17 -3.49 16 13 C -0.10 -4.16 5.15 30.60 0.16 -4.00 16 14 C 0.02 1.32 4.97 29.85 0.15 1.47 16 15 C -0.55 -32.33 9.11 25.60 0.23 -32.10 16 16 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 17 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 18 N -0.93 -58.50 13.29 21.45 0.28 -58.22 16 19 Si 0.97 45.27 29.54 68.60 2.03 47.30 16 20 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 21 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 22 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 23 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 24 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.08 1.09 8.05 -2.39 -0.02 1.08 16 27 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 29 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.07 1.49 7.92 -2.39 -0.02 1.48 16 32 H 0.34 8.50 8.34 -89.70 -0.75 7.76 16 33 H 0.03 0.77 8.07 -2.39 -0.02 0.75 16 34 H 0.07 2.06 8.12 -2.39 -0.02 2.04 16 35 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 38 H 0.05 2.01 8.14 -2.39 -0.02 2.00 16 39 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 40 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 41 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -65.92 341.44 2.00 -63.92 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: 0.21 Total: 12.73 kcal Atomic # 6 Polarization: -41.93 SS G_CDS: 3.70 Total: -38.23 kcal Atomic # 7 Polarization: -75.60 SS G_CDS: -2.72 Total: -78.32 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Atomic # 16 Polarization: -6.17 SS G_CDS: -1.22 Total: -7.40 kcal Total: -65.92 2.00 -63.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385201673.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.477 kcal (2) G-P(sol) polarization free energy of solvation -65.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds