Wall clock time and date at job start Mon Mar 30 2020 06:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81405 * 102.99966 * 2 1 4 4 H 1.08995 * 110.01471 * 54.93975 * 3 2 1 5 5 C 1.53869 * 110.02939 * 293.54196 * 3 2 1 6 6 C 1.54266 * 106.60031 * 240.71487 * 5 3 2 7 7 C 1.54894 * 104.31305 * 336.32486 * 6 5 3 8 8 H 1.08993 * 110.76071 * 279.69749 * 7 6 5 9 9 N 1.46892 * 110.75562 * 156.31936 * 7 6 5 10 10 C 1.46896 * 111.00038 * 86.45635 * 9 7 6 11 11 C 1.53002 * 109.47602 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47108 * 180.02562 * 11 10 9 13 13 C 1.53008 * 109.46888 * 179.97438 * 12 11 10 14 14 C 1.50698 * 109.46885 * 179.97438 * 13 12 11 15 15 H 1.08000 * 119.99921 * 0.02562 * 14 13 12 16 16 C 1.37881 * 119.99903 * 180.02562 * 14 13 12 17 17 N 1.31511 * 119.99655 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00198 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.46923 * 90.00010 * 18 16 14 20 20 H 1.48500 * 109.47180 * 210.00038 * 18 16 14 21 21 H 1.48493 * 109.47109 * 330.00266 * 18 16 14 22 22 C 1.54266 * 110.03171 * 176.37810 * 3 2 1 23 23 H 1.09002 * 109.46979 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47238 * 300.00107 * 1 2 3 25 25 H 1.08998 * 109.46810 * 60.00575 * 1 2 3 26 26 H 1.09001 * 110.02983 * 121.43239 * 5 3 2 27 27 H 1.08995 * 110.03881 * 0.02562 * 5 3 2 28 28 H 1.09002 * 110.48629 * 95.07240 * 6 5 3 29 29 H 1.08998 * 110.48744 * 217.58143 * 6 5 3 30 30 H 1.00908 * 111.00549 * 322.50160 * 9 7 6 31 31 H 1.08999 * 109.47539 * 299.99883 * 10 9 7 32 32 H 1.09003 * 109.46898 * 59.99768 * 10 9 7 33 33 H 1.09005 * 109.46788 * 300.00132 * 11 10 9 34 34 H 1.08993 * 109.47152 * 59.99954 * 11 10 9 35 35 H 1.08991 * 109.47212 * 299.99520 * 12 11 10 36 36 H 1.08996 * 109.47625 * 60.00276 * 12 11 10 37 37 H 1.08991 * 109.47165 * 299.99992 * 13 12 11 38 38 H 1.09006 * 109.46552 * 59.99885 * 13 12 11 39 39 H 0.97006 * 119.99916 * 179.97438 * 17 16 14 40 40 H 1.09005 * 110.48526 * 261.57494 * 22 3 2 41 41 H 1.09007 * 110.48724 * 24.07978 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7676 0.0000 4 1 1.7328 2.2634 0.8383 5 6 1.7780 2.4109 -1.3253 6 6 3.0518 2.9691 -1.9929 7 6 4.0382 3.1819 -0.8177 8 1 3.8195 4.1122 -0.2935 9 7 5.4274 3.1655 -1.2946 10 6 5.8451 4.4997 -1.7454 11 6 7.2938 4.4426 -2.2343 12 6 7.7289 5.8325 -2.7032 13 6 9.1779 5.7755 -3.1914 14 6 9.6063 7.1443 -3.6539 15 1 8.9144 7.9721 -3.6041 16 6 10.8814 7.3398 -4.1406 17 7 11.7236 6.3316 -4.2016 18 14 11.4123 9.0363 -4.7145 19 1 12.0008 9.7830 -3.5738 20 1 12.4249 8.8999 -5.7921 21 1 10.2332 9.7745 -5.2338 22 6 3.7503 1.9571 0.0916 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 1.0738 3.2197 -1.1302 27 1 1.3169 1.6613 -1.9683 28 1 3.4561 2.2494 -2.7047 29 1 2.8391 3.9162 -2.4886 30 1 5.5506 2.4816 -2.0263 31 1 5.1996 4.8264 -2.5607 32 1 5.7683 5.2037 -0.9168 33 1 7.9396 4.1158 -1.4192 34 1 7.3702 3.7388 -3.0629 35 1 7.0832 6.1597 -3.5180 36 1 7.6527 6.5361 -1.8742 37 1 9.8233 5.4485 -2.3764 38 1 9.2545 5.0718 -4.0204 39 1 12.6206 6.4690 -4.5443 40 1 4.0478 2.1668 1.1190 41 1 4.2674 1.0729 -0.2814 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385220715.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:32 Heat of formation + Delta-G solvation = -38.534478 kcal Electronic energy + Delta-G solvation = -16506.682826 eV Core-core repulsion = 13931.975698 eV Total energy + Delta-G solvation = -2574.707127 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.84119 -35.76082 -33.67421 -31.92705 -29.58556 -28.99558 -28.63810 -26.43310 -24.00130 -21.47114 -20.89681 -20.73656 -19.85274 -16.94654 -16.37237 -16.11888 -15.36680 -15.15583 -14.66125 -14.38008 -13.95700 -13.91722 -13.79379 -13.13752 -12.89735 -12.66343 -12.24060 -12.06522 -11.75981 -11.61483 -11.45560 -11.29183 -11.17992 -10.97423 -10.83434 -10.52757 -10.46168 -10.39887 -10.08757 -9.60645 -9.23259 -8.97976 -8.34014 -8.30217 -7.99258 -5.95848 -3.98006 1.36561 2.24410 3.33959 3.39903 3.43306 3.95678 4.22856 4.47964 4.54078 4.60259 4.75230 4.78218 5.04339 5.08863 5.10592 5.22908 5.29306 5.34396 5.39454 5.43932 5.57158 5.58170 5.67130 5.85736 5.90477 5.92938 5.95672 6.19119 6.29809 6.53801 6.85214 6.99026 7.07371 7.25640 7.42632 7.73348 7.89487 8.05448 8.48182 9.09547 9.65645 11.15492 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.074699 B = 0.002515 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 374.748462 B =11129.197277 C =11300.222173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 S -0.260 6.260 3 C -0.057 4.057 4 H 0.088 0.912 5 C -0.117 4.117 6 C -0.153 4.153 7 C 0.088 3.912 8 H 0.086 0.914 9 N -0.683 5.683 10 C 0.060 3.940 11 C -0.116 4.116 12 C -0.108 4.108 13 C 0.021 3.979 14 C -0.520 4.520 15 H 0.054 0.946 16 C 0.055 3.945 17 N -0.896 5.896 18 Si 0.891 3.109 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 C -0.090 4.090 23 H 0.099 0.901 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.342 0.658 31 H 0.027 0.973 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.054 0.946 35 H 0.044 0.956 36 H 0.046 0.954 37 H 0.016 0.984 38 H 0.014 0.986 39 H 0.260 0.740 40 H 0.078 0.922 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.258 -10.770 8.126 26.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.293 4.293 2 S -0.032 6.032 3 C -0.186 4.186 4 H 0.106 0.894 5 C -0.157 4.157 6 C -0.193 4.193 7 C -0.024 4.024 8 H 0.104 0.896 9 N -0.312 5.312 10 C -0.068 4.068 11 C -0.154 4.154 12 C -0.147 4.147 13 C -0.016 4.016 14 C -0.558 4.558 15 H 0.072 0.928 16 C -0.146 4.146 17 N -0.535 5.535 18 Si 0.719 3.281 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.199 1.199 22 C -0.129 4.129 23 H 0.117 0.883 24 H 0.093 0.907 25 H 0.094 0.906 26 H 0.086 0.914 27 H 0.092 0.908 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.161 0.839 31 H 0.045 0.955 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.034 0.966 38 H 0.033 0.967 39 H 0.069 0.931 40 H 0.097 0.903 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -22.137 -11.633 8.721 26.484 hybrid contribution -1.047 1.985 -1.184 2.537 sum -23.184 -9.649 7.537 26.218 Atomic orbital electron populations 1.23384 0.94770 1.06285 1.04812 1.87008 1.06830 1.11569 1.97831 1.23824 1.00857 0.93063 1.00838 0.89384 1.22463 0.98166 1.00146 0.94919 1.23089 0.96223 1.01136 0.98810 1.22600 0.87221 0.98067 0.94477 0.89559 1.60461 1.19828 1.08294 1.42616 1.22088 0.96922 0.89462 0.98363 1.21644 0.93921 0.99341 1.00514 1.21584 1.00038 0.93780 0.99266 1.19095 0.89558 0.96824 0.96165 1.21290 0.97607 0.95324 1.41589 0.92795 1.25042 0.96825 0.96735 0.96005 1.69971 1.06218 1.30503 1.46842 0.86606 0.78371 0.84670 0.78420 1.20681 1.21252 1.19943 1.22220 0.90719 0.98973 1.01019 0.88276 0.90660 0.90569 0.91439 0.90815 0.91018 0.91394 0.83928 0.95503 0.91318 0.91639 0.92745 0.93717 0.93475 0.96601 0.96735 0.93056 0.90345 0.90054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.75 10.58 101.05 1.07 0.32 16 2 S -0.26 -2.35 21.34 -107.50 -2.29 -4.64 16 3 C -0.06 -0.47 3.43 -25.62 -0.09 -0.55 16 4 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 5 C -0.12 -0.91 6.30 -25.62 -0.16 -1.07 16 6 C -0.15 -1.37 6.36 -25.07 -0.16 -1.53 16 7 C 0.09 0.88 3.20 -65.53 -0.21 0.68 16 8 H 0.09 0.87 7.91 -51.93 -0.41 0.46 16 9 N -0.68 -8.32 6.37 -104.43 -0.66 -8.99 16 10 C 0.06 0.84 5.54 -3.83 -0.02 0.82 16 11 C -0.12 -1.99 5.47 -26.73 -0.15 -2.14 16 12 C -0.11 -2.26 5.15 -26.73 -0.14 -2.40 16 13 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 14 C -0.52 -15.05 9.11 -34.44 -0.31 -15.37 16 15 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 16 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16 17 N -0.90 -27.45 13.29 55.43 0.74 -26.72 16 18 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 22 C -0.09 -0.85 6.08 -24.88 -0.15 -1.00 16 23 H 0.10 0.51 8.14 -51.92 -0.42 0.09 16 24 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 25 H 0.08 0.41 7.75 -51.92 -0.40 0.01 16 26 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.58 7.21 -51.93 -0.37 0.20 16 28 H 0.07 0.67 7.81 -51.93 -0.41 0.27 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.34 4.01 8.30 -39.29 -0.33 3.68 16 31 H 0.03 0.36 8.13 -51.93 -0.42 -0.06 16 32 H 0.07 0.96 8.09 -51.93 -0.42 0.54 16 33 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 40 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.08 0.86 7.81 -51.93 -0.41 0.45 16 LS Contribution 340.28 15.07 5.13 5.13 Total: -1.00 -30.39 340.28 -10.45 -40.84 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -7.78 Total: -2.25 kcal Atomic # 6 Polarization: -19.77 SS G_CDS: -0.56 Total: -20.32 kcal Atomic # 7 Polarization: -35.78 SS G_CDS: 0.07 Total: -35.70 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Atomic # 16 Polarization: -2.35 SS G_CDS: -2.29 Total: -4.64 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.39 -10.45 -40.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385220715.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.309 kcal (2) G-P(sol) polarization free energy of solvation -30.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds