Wall clock time and date at job start Mon Mar 30 2020 06:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81405 * 102.99966 * 2 1 4 4 H 1.08995 * 110.01471 * 54.93975 * 3 2 1 5 5 C 1.53869 * 110.02939 * 293.54196 * 3 2 1 6 6 C 1.54266 * 106.60031 * 240.71487 * 5 3 2 7 7 C 1.54894 * 104.31305 * 336.32486 * 6 5 3 8 8 H 1.08993 * 110.76071 * 279.69749 * 7 6 5 9 9 N 1.46892 * 110.75562 * 156.31936 * 7 6 5 10 10 C 1.46896 * 111.00038 * 86.45635 * 9 7 6 11 11 C 1.53002 * 109.47602 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47108 * 180.02562 * 11 10 9 13 13 C 1.53008 * 109.46888 * 179.97438 * 12 11 10 14 14 C 1.50698 * 109.46885 * 179.97438 * 13 12 11 15 15 H 1.08000 * 119.99921 * 0.02562 * 14 13 12 16 16 C 1.37881 * 119.99903 * 180.02562 * 14 13 12 17 17 N 1.31511 * 119.99655 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00198 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.46923 * 90.00010 * 18 16 14 20 20 H 1.48500 * 109.47180 * 210.00038 * 18 16 14 21 21 H 1.48493 * 109.47109 * 330.00266 * 18 16 14 22 22 C 1.54266 * 110.03171 * 176.37810 * 3 2 1 23 23 H 1.09002 * 109.46979 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47238 * 300.00107 * 1 2 3 25 25 H 1.08998 * 109.46810 * 60.00575 * 1 2 3 26 26 H 1.09001 * 110.02983 * 121.43239 * 5 3 2 27 27 H 1.08995 * 110.03881 * 0.02562 * 5 3 2 28 28 H 1.09002 * 110.48629 * 95.07240 * 6 5 3 29 29 H 1.08998 * 110.48744 * 217.58143 * 6 5 3 30 30 H 1.00908 * 111.00549 * 322.50160 * 9 7 6 31 31 H 1.08999 * 109.47539 * 299.99883 * 10 9 7 32 32 H 1.09003 * 109.46898 * 59.99768 * 10 9 7 33 33 H 1.09005 * 109.46788 * 300.00132 * 11 10 9 34 34 H 1.08993 * 109.47152 * 59.99954 * 11 10 9 35 35 H 1.08991 * 109.47212 * 299.99520 * 12 11 10 36 36 H 1.08996 * 109.47625 * 60.00276 * 12 11 10 37 37 H 1.08991 * 109.47165 * 299.99992 * 13 12 11 38 38 H 1.09006 * 109.46552 * 59.99885 * 13 12 11 39 39 H 0.97006 * 119.99916 * 179.97438 * 17 16 14 40 40 H 1.09005 * 110.48526 * 261.57494 * 22 3 2 41 41 H 1.09007 * 110.48724 * 24.07978 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7676 0.0000 4 1 1.7328 2.2634 0.8383 5 6 1.7780 2.4109 -1.3253 6 6 3.0518 2.9691 -1.9929 7 6 4.0382 3.1819 -0.8177 8 1 3.8195 4.1122 -0.2935 9 7 5.4274 3.1655 -1.2946 10 6 5.8451 4.4997 -1.7454 11 6 7.2938 4.4426 -2.2343 12 6 7.7289 5.8325 -2.7032 13 6 9.1779 5.7755 -3.1914 14 6 9.6063 7.1443 -3.6539 15 1 8.9144 7.9721 -3.6041 16 6 10.8814 7.3398 -4.1406 17 7 11.7236 6.3316 -4.2016 18 14 11.4123 9.0363 -4.7145 19 1 12.0008 9.7830 -3.5738 20 1 12.4249 8.8999 -5.7921 21 1 10.2332 9.7745 -5.2338 22 6 3.7503 1.9571 0.0916 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 1.0738 3.2197 -1.1302 27 1 1.3169 1.6613 -1.9683 28 1 3.4561 2.2494 -2.7047 29 1 2.8391 3.9162 -2.4886 30 1 5.5506 2.4816 -2.0263 31 1 5.1996 4.8264 -2.5607 32 1 5.7683 5.2037 -0.9168 33 1 7.9396 4.1158 -1.4192 34 1 7.3702 3.7388 -3.0629 35 1 7.0832 6.1597 -3.5180 36 1 7.6527 6.5361 -1.8742 37 1 9.8233 5.4485 -2.3764 38 1 9.2545 5.0718 -4.0204 39 1 12.6206 6.4690 -4.5443 40 1 4.0478 2.1668 1.1190 41 1 4.2674 1.0729 -0.2814 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385220715.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:32 Heat of formation + Delta-G solvation = -55.580625 kcal Electronic energy + Delta-G solvation = -16507.422002 eV Core-core repulsion = 13931.975698 eV Total energy + Delta-G solvation = -2575.446303 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.64522 -37.11135 -35.37871 -33.67554 -30.52615 -29.85509 -29.57698 -27.69938 -25.66993 -22.93804 -22.01353 -21.53513 -21.19386 -18.43055 -17.65470 -17.11858 -16.52620 -16.45593 -15.99619 -15.67342 -14.80571 -14.68948 -14.45589 -14.30758 -14.16609 -13.93025 -13.55162 -13.24781 -13.15524 -12.81407 -12.72592 -12.48705 -12.20815 -12.14131 -12.11410 -12.00630 -11.93506 -11.60642 -11.35999 -11.28942 -10.94679 -10.70726 -10.55194 -9.28712 -8.67770 -8.19531 -6.31088 0.76256 1.39641 1.41563 1.52620 1.67044 2.41136 3.08873 3.13040 3.53513 3.73913 3.91001 4.12521 4.23216 4.32506 4.34215 4.38260 4.40748 4.43153 4.51832 4.58171 4.59962 4.69063 4.85494 4.86808 4.90702 4.94247 5.01895 5.14808 5.19230 5.22035 5.27549 5.30966 5.37899 5.56069 5.78831 5.87547 6.15055 6.26217 6.46326 6.86683 7.38146 8.92368 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.074699 B = 0.002515 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 374.748462 B =11129.197277 C =11300.222173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 S -0.313 6.313 3 C -0.045 4.045 4 H 0.099 0.901 5 C -0.111 4.111 6 C -0.149 4.149 7 C 0.089 3.911 8 H 0.090 0.910 9 N -0.690 5.690 10 C 0.073 3.927 11 C -0.107 4.107 12 C -0.096 4.096 13 C 0.022 3.978 14 C -0.544 4.544 15 H 0.061 0.939 16 C -0.005 4.005 17 N -0.935 5.935 18 Si 0.967 3.033 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.262 1.262 22 C -0.087 4.087 23 H 0.107 0.893 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.082 0.918 27 H 0.074 0.926 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.344 0.656 31 H 0.035 0.965 32 H 0.071 0.929 33 H 0.053 0.947 34 H 0.051 0.949 35 H 0.051 0.949 36 H 0.051 0.949 37 H -0.012 1.012 38 H -0.011 1.011 39 H 0.263 0.737 40 H 0.077 0.923 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.172 -9.636 8.253 28.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.279 4.279 2 S -0.087 6.087 3 C -0.174 4.174 4 H 0.117 0.883 5 C -0.150 4.150 6 C -0.189 4.189 7 C -0.023 4.023 8 H 0.109 0.891 9 N -0.320 5.320 10 C -0.055 4.055 11 C -0.145 4.145 12 C -0.134 4.134 13 C -0.015 4.015 14 C -0.582 4.582 15 H 0.079 0.921 16 C -0.202 4.202 17 N -0.575 5.575 18 Si 0.792 3.208 19 H -0.197 1.197 20 H -0.207 1.207 21 H -0.186 1.186 22 C -0.126 4.126 23 H 0.126 0.874 24 H 0.104 0.896 25 H 0.103 0.897 26 H 0.101 0.899 27 H 0.092 0.908 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.163 0.837 31 H 0.053 0.947 32 H 0.090 0.910 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.007 0.993 38 H 0.007 0.993 39 H 0.072 0.928 40 H 0.096 0.904 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -24.073 -10.505 8.858 27.719 hybrid contribution -0.453 1.563 -1.207 2.026 sum -24.526 -8.941 7.651 27.203 Atomic orbital electron populations 1.23419 0.91570 1.07187 1.05773 1.87210 1.10457 1.13027 1.97969 1.23751 0.99820 0.92203 1.01590 0.88251 1.22425 0.97751 1.00490 0.94381 1.23027 0.96451 1.01149 0.98257 1.22629 0.86142 0.98479 0.95004 0.89146 1.60407 1.21602 1.07363 1.42644 1.21843 0.94517 0.90539 0.98643 1.21475 0.96135 0.96863 1.00010 1.21389 0.96351 0.96220 0.99465 1.19034 0.92825 0.95352 0.94327 1.21748 0.98222 0.96404 1.41823 0.92123 1.26050 0.96891 1.01327 0.95969 1.70111 1.06710 1.33072 1.47625 0.85414 0.78222 0.79119 0.78091 1.19714 1.20721 1.18633 1.22155 0.91731 0.98074 1.00685 0.87443 0.89593 0.89653 0.89890 0.90774 0.91703 0.91141 0.83732 0.94673 0.91006 0.92790 0.92974 0.93063 0.93031 0.99343 0.99281 0.92791 0.90441 0.91486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.12 10.58 113.37 1.20 0.08 16 2 S -0.31 -5.37 21.34 -56.49 -1.21 -6.57 16 3 C -0.04 -0.66 3.43 31.32 0.11 -0.55 16 4 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 5 C -0.11 -1.47 6.30 31.32 0.20 -1.27 16 6 C -0.15 -2.41 6.36 31.67 0.20 -2.21 16 7 C 0.09 1.65 3.20 46.33 0.15 1.80 16 8 H 0.09 1.64 7.91 -2.39 -0.02 1.62 16 9 N -0.69 -16.16 6.37 -484.32 -3.08 -19.24 16 10 C 0.07 1.94 5.54 86.30 0.48 2.42 16 11 C -0.11 -3.64 5.47 30.59 0.17 -3.48 16 12 C -0.10 -3.99 5.15 30.60 0.16 -3.83 16 13 C 0.02 1.18 4.97 29.85 0.15 1.33 16 14 C -0.54 -31.76 9.11 25.60 0.23 -31.52 16 15 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 16 C 0.00 -0.29 5.46 84.66 0.46 0.17 16 17 N -0.93 -58.27 13.29 21.45 0.28 -57.99 16 18 Si 0.97 44.94 29.54 68.60 2.03 46.96 16 19 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 20 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 21 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 22 C -0.09 -1.56 6.08 31.79 0.19 -1.37 16 23 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.08 0.71 7.75 -2.39 -0.02 0.70 16 26 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.07 1.01 7.21 -2.39 -0.02 0.99 16 28 H 0.06 1.14 7.81 -2.39 -0.02 1.13 16 29 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.34 7.85 8.30 -89.69 -0.74 7.11 16 31 H 0.04 0.88 8.13 -2.39 -0.02 0.86 16 32 H 0.07 1.88 8.09 -2.39 -0.02 1.86 16 33 H 0.05 1.95 8.14 -2.38 -0.02 1.94 16 34 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 37 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 38 H -0.01 -0.66 8.14 -2.38 -0.02 -0.68 16 39 H 0.26 15.36 8.31 -92.70 -0.77 14.59 16 40 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 41 H 0.07 1.41 7.81 -2.38 -0.02 1.39 16 Total: -1.00 -65.50 340.28 1.94 -63.57 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: 0.22 Total: 11.71 kcal Atomic # 6 Polarization: -42.13 SS G_CDS: 3.69 Total: -38.44 kcal Atomic # 7 Polarization: -74.43 SS G_CDS: -2.80 Total: -77.23 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.96 kcal Atomic # 16 Polarization: -5.37 SS G_CDS: -1.21 Total: -6.57 kcal Total: -65.50 1.94 -63.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385220715.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.986 kcal (2) G-P(sol) polarization free energy of solvation -65.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds