Wall clock time and date at job start Mon Mar 30 2020 06:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.81406 * 102.99964 * 2 1 4 4 H 1.08999 * 110.42923 * 52.45946 * 3 2 1 5 5 C 1.54880 * 110.48658 * 289.77290 * 3 2 1 6 6 C 1.54893 * 102.74949 * 203.37539 * 5 3 2 7 7 C 1.54274 * 104.19175 * 37.94255 * 6 5 3 8 8 H 1.09005 * 110.06895 * 95.69557 * 7 6 5 9 9 N 1.46892 * 110.03288 * 217.10375 * 7 6 5 10 10 C 1.46906 * 111.00346 * 272.17258 * 9 7 6 11 11 C 1.52998 * 109.47410 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.46929 * 179.97438 * 11 10 9 13 13 C 1.52998 * 109.46929 * 179.97438 * 12 11 10 14 14 C 1.50706 * 109.47348 * 179.97438 * 13 12 11 15 15 H 1.08005 * 119.99758 * 359.97438 * 14 13 12 16 16 C 1.37871 * 120.00102 * 179.97438 * 14 13 12 17 17 N 1.31516 * 120.00217 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99766 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47057 * 179.97438 * 18 16 14 20 20 H 1.48500 * 109.47389 * 300.00068 * 18 16 14 21 21 H 1.48504 * 109.47102 * 60.00417 * 18 16 14 22 22 C 1.53873 * 106.59808 * 336.39189 * 7 6 5 23 23 H 1.08998 * 109.46732 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47375 * 299.99907 * 1 2 3 25 25 H 1.09001 * 109.46994 * 60.00019 * 1 2 3 26 26 H 1.08996 * 110.75947 * 321.69008 * 5 3 2 27 27 H 1.09008 * 110.75566 * 84.88299 * 5 3 2 28 28 H 1.08997 * 110.48676 * 279.26822 * 6 5 3 29 29 H 1.09001 * 110.48590 * 156.61628 * 6 5 3 30 30 H 1.00905 * 110.99826 * 36.11920 * 9 7 6 31 31 H 1.09004 * 109.47333 * 59.99372 * 10 9 7 32 32 H 1.09006 * 109.46525 * 300.00078 * 10 9 7 33 33 H 1.09000 * 109.46986 * 59.99535 * 11 10 9 34 34 H 1.09002 * 109.46857 * 299.99400 * 11 10 9 35 35 H 1.09000 * 109.47441 * 60.00090 * 12 11 10 36 36 H 1.09002 * 109.47087 * 299.99536 * 12 11 10 37 37 H 1.09001 * 109.47671 * 60.00109 * 13 12 11 38 38 H 1.09006 * 109.47297 * 299.99829 * 13 12 11 39 39 H 0.97001 * 119.99646 * 359.97438 * 17 16 14 40 40 H 1.08997 * 110.03468 * 119.28682 * 22 7 6 41 41 H 1.09005 * 110.02948 * 240.66468 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 1 1.7012 2.2783 0.8099 5 6 1.8657 2.4061 -1.3653 6 6 2.7889 3.6490 -1.4127 7 6 4.1066 3.1660 -0.7721 8 1 4.8067 2.8536 -1.5470 9 7 4.6974 4.2416 0.0353 10 6 5.5641 5.0996 -0.7838 11 6 6.1602 6.2050 0.0901 12 6 7.0633 7.0981 -0.7629 13 6 7.6589 8.2038 0.1108 14 6 8.5490 9.0833 -0.7293 15 1 8.6773 8.8741 -1.7811 16 6 9.1994 10.1548 -0.1551 17 7 9.0435 10.4092 1.1258 18 14 10.3031 11.2444 -1.1962 19 1 10.8802 12.3185 -0.3485 20 1 11.3996 10.4281 -1.7764 21 1 9.5065 11.8533 -2.2916 22 6 3.7462 1.9698 0.1261 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 2.0954 1.7230 -2.1830 27 1 0.8163 2.6998 -1.3923 28 1 2.3594 4.4655 -0.8323 29 1 2.9575 3.9599 -2.4437 30 1 3.9812 4.7842 0.4944 31 1 4.9782 5.5469 -1.5868 32 1 6.3687 4.5010 -1.2110 33 1 6.7461 5.7573 0.8928 34 1 5.3559 6.8036 0.5176 35 1 6.4777 7.5458 -1.5659 36 1 7.8676 6.4992 -1.1902 37 1 8.2445 7.7566 0.9140 38 1 6.8543 8.8027 0.5377 39 1 8.4707 9.8432 1.6664 40 1 4.2707 1.0766 -0.2133 41 1 4.0104 2.1870 1.1611 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385220719.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:38 Heat of formation + Delta-G solvation = -41.329442 kcal Electronic energy + Delta-G solvation = -16544.639621 eV Core-core repulsion = 13969.811295 eV Total energy + Delta-G solvation = -2574.828326 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.96449 -35.84061 -33.90083 -31.96504 -29.53231 -29.04108 -28.53336 -26.27973 -23.76686 -21.60028 -21.31142 -20.68121 -19.91552 -17.02170 -16.63984 -16.21153 -15.65521 -15.07993 -14.52101 -14.10318 -14.03532 -13.69945 -13.68018 -13.44249 -13.05351 -12.89533 -12.26869 -12.16211 -12.06358 -11.58679 -11.46456 -11.24951 -11.00286 -10.97156 -10.88453 -10.58623 -10.55221 -10.17834 -10.09632 -9.75324 -9.59063 -8.47357 -8.41649 -8.28295 -8.01858 -6.31963 -4.00392 1.35502 2.22588 3.45634 3.48007 3.66705 3.98014 4.21465 4.26932 4.58287 4.72488 4.74546 4.78884 4.96459 5.05527 5.10888 5.22029 5.24937 5.30800 5.38401 5.45344 5.48429 5.50703 5.63970 5.80629 5.83756 5.86823 5.95033 6.08920 6.19836 6.41163 6.71160 6.83891 6.96171 7.13173 7.35669 7.47620 7.61146 8.27803 8.51223 8.93549 9.72048 11.08753 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.076212 B = 0.002506 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 367.309986 B =11171.309677 C =11278.241032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.262 6.262 3 C -0.058 4.058 4 H 0.090 0.910 5 C -0.114 4.114 6 C -0.151 4.151 7 C 0.087 3.913 8 H 0.083 0.917 9 N -0.685 5.685 10 C 0.060 3.940 11 C -0.117 4.117 12 C -0.102 4.102 13 C 0.008 3.992 14 C -0.601 4.601 15 H 0.047 0.953 16 C 0.012 3.988 17 N -0.915 5.915 18 Si 1.069 2.931 19 H -0.282 1.282 20 H -0.288 1.288 21 H -0.289 1.289 22 C -0.092 4.092 23 H 0.098 0.902 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.340 0.660 31 H 0.027 0.973 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.053 0.947 35 H 0.046 0.954 36 H 0.049 0.951 37 H 0.007 0.993 38 H 0.005 0.995 39 H 0.268 0.732 40 H 0.075 0.925 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.853 -19.488 -3.820 26.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.034 6.034 3 C -0.187 4.187 4 H 0.108 0.892 5 C -0.154 4.154 6 C -0.192 4.192 7 C -0.024 4.024 8 H 0.101 0.899 9 N -0.315 5.315 10 C -0.069 4.069 11 C -0.155 4.155 12 C -0.140 4.140 13 C -0.029 4.029 14 C -0.640 4.640 15 H 0.066 0.934 16 C -0.191 4.191 17 N -0.551 5.551 18 Si 0.897 3.103 19 H -0.208 1.208 20 H -0.215 1.215 21 H -0.215 1.215 22 C -0.131 4.131 23 H 0.117 0.883 24 H 0.094 0.906 25 H 0.094 0.906 26 H 0.099 0.901 27 H 0.084 0.916 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.158 0.842 31 H 0.045 0.955 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.025 0.975 38 H 0.023 0.977 39 H 0.079 0.921 40 H 0.093 0.907 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -15.670 -19.459 -3.503 25.229 hybrid contribution -2.641 0.144 -0.586 2.709 sum -18.311 -19.315 -4.090 26.928 Atomic orbital electron populations 1.23359 0.94614 1.06295 1.04843 1.86919 1.07046 1.11553 1.97861 1.24092 1.00996 0.92816 1.00784 0.89182 1.22800 0.99426 0.97221 0.95981 1.23148 0.96558 0.97613 1.01876 1.22187 0.94161 0.91909 0.94192 0.89859 1.60643 1.24713 1.14766 1.31359 1.22084 0.95773 0.94233 0.94802 1.21655 0.99350 0.95647 0.98830 1.21453 0.97296 0.96997 0.98245 1.19223 0.95319 0.93091 0.95305 1.22092 1.30627 1.14464 0.96798 0.93448 1.25868 0.98247 0.97443 0.97589 1.70778 1.37731 1.40445 1.06150 0.83549 0.75902 0.76040 0.74782 1.20782 1.21456 1.21513 1.22019 0.91078 0.97924 1.02111 0.88286 0.90608 0.90569 0.90058 0.91584 0.91236 0.91117 0.84152 0.95457 0.91221 0.91698 0.92866 0.93536 0.93257 0.97512 0.97680 0.92123 0.90676 0.89454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.74 10.72 101.05 1.08 0.34 16 2 S -0.26 -2.34 21.63 -107.50 -2.33 -4.66 16 3 C -0.06 -0.48 3.36 -25.08 -0.08 -0.57 16 4 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 5 C -0.11 -0.87 6.30 -24.74 -0.16 -1.03 16 6 C -0.15 -1.30 6.46 -25.07 -0.16 -1.46 16 7 C 0.09 0.87 3.23 -66.60 -0.22 0.65 16 8 H 0.08 0.87 7.81 -51.93 -0.41 0.47 16 9 N -0.68 -8.13 6.17 -105.54 -0.65 -8.78 16 10 C 0.06 0.83 5.51 -3.82 -0.02 0.81 16 11 C -0.12 -1.99 5.47 -26.73 -0.15 -2.13 16 12 C -0.10 -2.14 5.15 -26.73 -0.14 -2.27 16 13 C 0.01 0.20 4.28 -27.88 -0.12 0.08 16 14 C -0.60 -17.68 9.11 -34.44 -0.31 -17.99 16 15 H 0.05 1.36 7.74 -52.48 -0.41 0.96 16 16 C 0.01 0.35 5.46 -17.82 -0.10 0.26 16 17 N -0.91 -28.74 13.65 55.43 0.76 -27.99 16 18 Si 1.07 25.82 29.90 -169.99 -5.08 20.73 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 21 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 22 C -0.09 -0.87 6.18 -25.61 -0.16 -1.03 16 23 H 0.10 0.51 8.14 -51.92 -0.42 0.08 16 24 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 25 H 0.08 0.41 8.14 -51.92 -0.42 -0.01 16 26 H 0.08 0.64 8.05 -51.93 -0.42 0.22 16 27 H 0.07 0.45 8.14 -51.92 -0.42 0.02 16 28 H 0.07 0.60 7.56 -51.93 -0.39 0.21 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.34 3.79 8.10 -39.29 -0.32 3.47 16 31 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.98 8.07 -51.93 -0.42 0.56 16 33 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.01 0.18 8.01 -51.93 -0.42 -0.23 16 38 H 0.00 0.14 8.01 -51.93 -0.42 -0.28 16 39 H 0.27 8.40 7.22 -40.82 -0.29 8.11 16 40 H 0.07 0.74 7.79 -51.93 -0.40 0.34 16 41 H 0.09 0.89 7.92 -51.93 -0.41 0.48 16 LS Contribution 339.77 15.07 5.12 5.12 Total: -1.00 -31.13 339.77 -10.46 -41.59 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -7.75 Total: -1.66 kcal Atomic # 6 Polarization: -23.82 SS G_CDS: -0.53 Total: -24.35 kcal Atomic # 7 Polarization: -36.88 SS G_CDS: 0.11 Total: -36.77 kcal Atomic # 14 Polarization: 25.82 SS G_CDS: -5.08 Total: 20.73 kcal Atomic # 16 Polarization: -2.34 SS G_CDS: -2.33 Total: -4.66 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.13 -10.46 -41.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385220719.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.260 kcal (2) G-P(sol) polarization free energy of solvation -31.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds