Wall clock time and date at job start Mon Mar 30 2020 07:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00186 * 2 1 4 4 H 1.48497 * 109.47108 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46994 * 300.00456 * 3 2 1 6 6 H 1.48502 * 109.47033 * 59.99728 * 3 2 1 7 7 C 1.37871 * 120.00086 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00416 * 180.02562 * 7 2 1 9 9 C 1.50707 * 120.00036 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47131 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47068 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.47068 * 179.97438 * 11 10 9 13 13 S 1.81404 * 109.46759 * 180.02562 * 12 11 10 14 14 O 1.42101 * 109.46637 * 289.05115 * 13 12 11 15 15 C 1.76200 * 102.99852 * 180.02562 * 13 12 11 16 16 C 1.33381 * 125.20818 * 89.99524 * 15 13 12 17 17 C 1.38427 * 114.92374 * 179.97438 * 16 15 13 18 18 C 1.33387 * 114.91991 * 0.25034 * 17 16 15 19 19 S 1.75886 * 109.59194 * 359.63459 * 18 17 16 20 20 H 0.97003 * 120.00357 * 359.97438 * 1 2 3 21 21 H 1.09005 * 109.46907 * 60.00501 * 9 7 2 22 22 H 1.09004 * 109.47314 * 300.00357 * 9 7 2 23 23 H 1.08994 * 109.47249 * 59.99918 * 10 9 7 24 24 H 1.09000 * 109.47252 * 299.99751 * 10 9 7 25 25 H 1.09002 * 109.47210 * 59.99550 * 11 10 9 26 26 H 1.09001 * 109.47012 * 300.00427 * 11 10 9 27 27 H 1.08992 * 109.46941 * 60.00256 * 12 11 10 28 28 H 1.08991 * 109.47008 * 299.99525 * 12 11 10 29 29 H 1.08001 * 122.53741 * 359.97438 * 16 15 13 30 30 H 1.08002 * 122.53759 * 179.97438 * 17 16 15 31 31 H 1.08002 * 125.20431 * 179.75072 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 6 2.4745 -6.1500 -0.0018 13 16 1.5674 -7.7210 -0.0034 14 8 0.9515 -7.9134 1.2627 15 6 2.8560 -8.9227 -0.0032 16 6 3.4178 -9.4477 1.0867 17 6 4.4136 -10.3769 0.8397 18 6 4.6642 -10.6026 -0.4508 19 16 3.5980 -9.6139 -1.4403 20 1 -0.4851 0.8400 0.0004 21 1 0.6240 -2.5567 -0.8904 22 1 0.6246 -2.5571 0.8897 23 1 2.8719 -3.6043 0.8894 24 1 2.8719 -3.6044 -0.8905 25 1 0.8538 -5.0446 -0.8914 26 1 0.8532 -5.0451 0.8885 27 1 3.1011 -6.0927 0.8881 28 1 3.1010 -6.0919 -0.8918 29 1 3.1183 -9.1690 2.0862 30 1 4.9503 -10.8778 1.6319 31 1 5.4068 -11.2889 -0.8302 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385228257.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:21 Heat of formation + Delta-G solvation = -28.076908 kcal Electronic energy + Delta-G solvation = -14021.410252 eV Core-core repulsion = 11520.524619 eV Total energy + Delta-G solvation = -2500.885633 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 258.049 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -37.89829 -35.69978 -35.15076 -32.62589 -29.91396 -29.44007 -25.28733 -24.37522 -22.04302 -20.20159 -19.80304 -18.80889 -16.85785 -16.20980 -15.93815 -15.15061 -14.93326 -14.40818 -14.31532 -13.40352 -13.23175 -12.96051 -12.65449 -12.59731 -12.09677 -11.81358 -11.71026 -11.15206 -11.02082 -10.70779 -10.64060 -10.49091 -10.27435 -9.66559 -9.41516 -9.28098 -9.03829 -8.72799 -8.33223 -8.32200 -5.97650 -3.99894 0.41269 1.25558 1.62199 1.84847 2.36032 2.76715 3.32218 3.39566 3.43833 3.89203 4.47850 4.70052 5.09772 5.18238 5.23959 5.26832 5.38086 5.73566 5.79448 5.84547 5.99571 6.13140 6.21601 6.42136 6.74009 6.90003 7.14995 7.70785 7.85713 8.02938 8.45814 9.07588 9.64066 11.13720 Molecular weight = 258.05amu Principal moments of inertia in cm(-1) A = 0.044137 B = 0.003450 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.241267 B = 8114.531199 C = 8367.647345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.055 0.945 9 C 0.018 3.982 10 C -0.104 4.104 11 C -0.101 4.101 12 C -0.445 4.445 13 S 1.351 4.649 14 O -0.846 6.846 15 C -0.554 4.554 16 C -0.052 4.052 17 C -0.153 4.153 18 C -0.194 4.194 19 S 0.168 5.832 20 H 0.260 0.740 21 H 0.018 0.982 22 H 0.015 0.985 23 H 0.045 0.955 24 H 0.050 0.950 25 H 0.070 0.930 26 H 0.061 0.939 27 H 0.085 0.915 28 H 0.114 0.886 29 H 0.141 0.859 30 H 0.141 0.859 31 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.102 -22.161 -5.213 23.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.558 4.558 8 H 0.073 0.927 9 C -0.020 4.020 10 C -0.143 4.143 11 C -0.140 4.140 12 C -0.583 4.583 13 S 1.546 4.454 14 O -0.841 6.841 15 C -0.765 4.765 16 C -0.085 4.085 17 C -0.185 4.185 18 C -0.331 4.331 19 S 0.432 5.568 20 H 0.069 0.931 21 H 0.036 0.964 22 H 0.034 0.966 23 H 0.064 0.936 24 H 0.069 0.931 25 H 0.089 0.911 26 H 0.080 0.920 27 H 0.104 0.896 28 H 0.133 0.867 29 H 0.159 0.841 30 H 0.159 0.841 31 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 5.794 -22.078 -6.764 23.807 hybrid contribution 2.317 0.838 3.380 4.183 sum 8.111 -21.240 -3.385 22.987 Atomic orbital electron populations 1.69974 1.06033 1.26447 1.51046 1.25033 0.94855 0.99250 0.95411 0.86551 0.80103 0.83866 0.77570 1.19789 1.20984 1.21050 1.21310 0.93056 0.91153 1.50295 0.92712 1.19147 0.94104 0.91397 0.97317 1.21620 0.99007 0.93275 1.00388 1.21323 0.96808 0.93671 1.02242 1.27812 1.09669 1.13210 1.07635 1.69509 0.83654 0.82978 1.09227 1.93096 1.63992 1.82203 1.44850 1.32682 1.22126 1.21310 1.00357 1.20225 0.93911 0.94874 0.99460 1.20379 1.00307 1.01068 0.96738 1.25969 1.04590 1.05278 0.97309 1.83863 1.30009 1.35812 1.07125 0.93073 0.96371 0.96636 0.93594 0.93089 0.91135 0.92004 0.89568 0.86734 0.84119 0.84110 0.81555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.23 13.29 55.43 0.74 -26.50 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 4 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.52 -14.97 9.11 -34.44 -0.31 -15.28 16 8 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.02 0.46 4.97 -27.88 -0.14 0.32 16 10 C -0.10 -2.15 5.15 -26.73 -0.14 -2.29 16 11 C -0.10 -1.69 5.22 -26.73 -0.14 -1.83 16 12 C -0.45 -5.93 5.88 37.16 0.22 -5.71 16 13 S 1.35 15.79 13.84 -107.50 -1.49 14.31 16 14 O -0.85 -14.90 17.42 -35.23 -0.61 -15.51 16 15 C -0.55 -6.22 6.27 29.04 0.18 -6.04 16 16 C -0.05 -0.62 9.72 -41.21 -0.40 -1.02 16 17 C -0.15 -1.48 10.18 -41.21 -0.42 -1.90 16 18 C -0.19 -1.60 11.23 29.04 0.33 -1.28 16 19 S 0.17 1.42 23.34 -107.50 -2.51 -1.09 16 20 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 21 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 22 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 23 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 24 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 25 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 27 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 28 H 0.11 1.26 8.14 -51.93 -0.42 0.83 16 29 H 0.14 1.81 7.92 -52.49 -0.42 1.40 16 30 H 0.14 1.07 8.06 -52.49 -0.42 0.64 16 31 H 0.17 0.90 8.06 -52.49 -0.42 0.47 16 LS Contribution 297.17 15.07 4.48 4.48 Total: -1.00 -35.70 297.17 -9.52 -45.22 By element: Atomic # 1 Polarization: -0.06 SS G_CDS: -4.18 Total: -4.25 kcal Atomic # 6 Polarization: -32.60 SS G_CDS: -0.92 Total: -33.52 kcal Atomic # 7 Polarization: -27.23 SS G_CDS: 0.74 Total: -26.50 kcal Atomic # 8 Polarization: -14.90 SS G_CDS: -0.61 Total: -15.51 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Atomic # 16 Polarization: 17.21 SS G_CDS: -4.00 Total: 13.21 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -35.70 -9.52 -45.22 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385228257.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.145 kcal (2) G-P(sol) polarization free energy of solvation -35.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds