Wall clock time and date at job start Mon Mar 30 2020 07:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00186 * 2 1 4 4 H 1.48497 * 109.47108 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46994 * 300.00456 * 3 2 1 6 6 H 1.48502 * 109.47033 * 59.99728 * 3 2 1 7 7 C 1.37871 * 120.00086 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00416 * 180.02562 * 7 2 1 9 9 C 1.50707 * 120.00036 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47131 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47068 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.47068 * 179.97438 * 11 10 9 13 13 S 1.81404 * 109.46759 * 180.02562 * 12 11 10 14 14 O 1.42101 * 109.46637 * 289.05115 * 13 12 11 15 15 C 1.76200 * 102.99852 * 180.02562 * 13 12 11 16 16 C 1.33381 * 125.20818 * 89.99524 * 15 13 12 17 17 C 1.38427 * 114.92374 * 179.97438 * 16 15 13 18 18 C 1.33387 * 114.91991 * 0.25034 * 17 16 15 19 19 S 1.75886 * 109.59194 * 359.63459 * 18 17 16 20 20 H 0.97003 * 120.00357 * 359.97438 * 1 2 3 21 21 H 1.09005 * 109.46907 * 60.00501 * 9 7 2 22 22 H 1.09004 * 109.47314 * 300.00357 * 9 7 2 23 23 H 1.08994 * 109.47249 * 59.99918 * 10 9 7 24 24 H 1.09000 * 109.47252 * 299.99751 * 10 9 7 25 25 H 1.09002 * 109.47210 * 59.99550 * 11 10 9 26 26 H 1.09001 * 109.47012 * 300.00427 * 11 10 9 27 27 H 1.08992 * 109.46941 * 60.00256 * 12 11 10 28 28 H 1.08991 * 109.47008 * 299.99525 * 12 11 10 29 29 H 1.08001 * 122.53741 * 359.97438 * 16 15 13 30 30 H 1.08002 * 122.53759 * 179.97438 * 17 16 15 31 31 H 1.08002 * 125.20431 * 179.75072 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 6 2.4745 -6.1500 -0.0018 13 16 1.5674 -7.7210 -0.0034 14 8 0.9515 -7.9134 1.2627 15 6 2.8560 -8.9227 -0.0032 16 6 3.4178 -9.4477 1.0867 17 6 4.4136 -10.3769 0.8397 18 6 4.6642 -10.6026 -0.4508 19 16 3.5980 -9.6139 -1.4403 20 1 -0.4851 0.8400 0.0004 21 1 0.6240 -2.5567 -0.8904 22 1 0.6246 -2.5571 0.8897 23 1 2.8719 -3.6043 0.8894 24 1 2.8719 -3.6044 -0.8905 25 1 0.8538 -5.0446 -0.8914 26 1 0.8532 -5.0451 0.8885 27 1 3.1011 -6.0927 0.8881 28 1 3.1010 -6.0919 -0.8918 29 1 3.1183 -9.1690 2.0862 30 1 4.9503 -10.8778 1.6319 31 1 5.4068 -11.2889 -0.8302 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385228257.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:21 Heat of formation + Delta-G solvation = -51.659267 kcal Electronic energy + Delta-G solvation = -14022.432860 eV Core-core repulsion = 11520.524619 eV Total energy + Delta-G solvation = -2501.908241 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 258.049 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.66476 -36.94579 -36.80473 -34.64468 -31.29269 -30.62161 -27.14018 -25.19062 -23.73347 -21.86478 -20.65365 -19.64112 -18.42893 -17.84423 -16.75008 -16.56458 -16.47072 -15.94993 -15.26525 -14.69155 -14.55255 -14.08440 -13.85395 -13.74253 -13.61025 -13.38666 -13.06187 -12.84039 -12.41233 -12.32264 -12.21287 -11.87170 -11.64172 -11.42235 -11.29846 -10.95303 -10.55662 -10.19641 -9.45020 -9.37385 -8.19815 -6.31233 -0.39652 0.47301 0.83903 1.02078 1.39593 1.40110 1.53482 1.53974 1.84023 2.41027 2.87184 3.12894 3.94057 4.02901 4.08395 4.37795 4.39860 4.48097 4.56854 4.86986 4.93714 4.96427 5.11567 5.13745 5.25812 5.30275 5.35696 5.53746 5.77024 5.86970 6.25933 6.86277 7.38030 8.92150 Molecular weight = 258.05amu Principal moments of inertia in cm(-1) A = 0.044137 B = 0.003450 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.241267 B = 8114.531199 C = 8367.647345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.003 4.003 3 Si 0.966 3.034 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.280 1.280 7 C -0.545 4.545 8 H 0.059 0.941 9 C 0.018 3.982 10 C -0.095 4.095 11 C -0.101 4.101 12 C -0.445 4.445 13 S 1.413 4.587 14 O -0.910 6.910 15 C -0.583 4.583 16 C -0.070 4.070 17 C -0.173 4.173 18 C -0.183 4.183 19 S 0.224 5.776 20 H 0.264 0.736 21 H 0.003 0.997 22 H -0.017 1.017 23 H 0.036 0.964 24 H 0.067 0.933 25 H 0.095 0.905 26 H 0.038 0.962 27 H 0.069 0.931 28 H 0.147 0.853 29 H 0.118 0.882 30 H 0.157 0.843 31 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.192 -23.106 -7.072 25.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.200 4.200 3 Si 0.790 3.210 4 H -0.186 1.186 5 H -0.199 1.199 6 H -0.206 1.206 7 C -0.583 4.583 8 H 0.077 0.923 9 C -0.020 4.020 10 C -0.134 4.134 11 C -0.139 4.139 12 C -0.583 4.583 13 S 1.610 4.390 14 O -0.906 6.906 15 C -0.796 4.796 16 C -0.104 4.104 17 C -0.204 4.204 18 C -0.320 4.320 19 S 0.489 5.511 20 H 0.073 0.927 21 H 0.022 0.978 22 H 0.001 0.999 23 H 0.055 0.945 24 H 0.085 0.915 25 H 0.114 0.886 26 H 0.057 0.943 27 H 0.088 0.912 28 H 0.165 0.835 29 H 0.136 0.864 30 H 0.175 0.825 31 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 7.879 -23.013 -8.629 25.810 hybrid contribution 1.718 1.028 3.899 4.383 sum 9.597 -21.984 -4.730 24.450 Atomic orbital electron populations 1.70104 1.07794 1.27723 1.51755 1.26010 0.95817 1.03439 0.94762 0.85385 0.79021 0.78704 0.77844 1.18637 1.19949 1.20624 1.21761 0.93538 0.92542 1.50416 0.92295 1.19094 0.94638 0.93248 0.94980 1.21455 0.97970 0.93288 1.00650 1.21220 0.97245 0.93030 1.02451 1.27795 1.09123 1.12947 1.08413 1.68736 0.82366 0.81472 1.06431 1.92977 1.66812 1.83295 1.47544 1.32435 1.22879 1.21983 1.02298 1.20311 0.95180 0.96143 0.98782 1.20501 1.00371 1.01332 0.98159 1.26467 1.04202 1.04594 0.96714 1.83670 1.28527 1.34391 1.04549 0.92743 0.97829 0.99873 0.94541 0.91452 0.88638 0.94300 0.91187 0.83528 0.86429 0.82526 0.78164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.74 13.29 21.44 0.28 -57.45 16 2 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 3 Si 0.97 44.88 29.54 68.60 2.03 46.90 16 4 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 5 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 6 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 7 C -0.54 -31.74 9.11 25.60 0.23 -31.50 16 8 H 0.06 3.30 7.74 -2.91 -0.02 3.27 16 9 C 0.02 0.95 4.97 29.85 0.15 1.10 16 10 C -0.09 -3.95 5.15 30.60 0.16 -3.79 16 11 C -0.10 -3.37 5.22 30.60 0.16 -3.21 16 12 C -0.45 -11.49 5.88 71.98 0.42 -11.06 16 13 S 1.41 32.50 13.84 -56.49 -0.78 31.72 16 14 O -0.91 -33.22 17.42 -148.98 -2.60 -35.81 16 15 C -0.58 -12.39 6.27 66.72 0.42 -11.98 16 16 C -0.07 -1.65 9.72 21.22 0.21 -1.45 16 17 C -0.17 -3.01 10.18 21.22 0.22 -2.79 16 18 C -0.18 -2.35 11.23 66.72 0.75 -1.60 16 19 S 0.22 3.05 23.34 -56.49 -1.32 1.73 16 20 H 0.26 15.23 8.31 -92.71 -0.77 14.45 16 21 H 0.00 0.19 8.14 -2.38 -0.02 0.17 16 22 H -0.02 -1.02 8.14 -2.38 -0.02 -1.04 16 23 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 24 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 25 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 26 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 28 H 0.15 2.80 8.14 -2.40 -0.02 2.78 16 29 H 0.12 3.23 7.92 -2.91 -0.02 3.21 16 30 H 0.16 2.10 8.06 -2.91 -0.02 2.07 16 31 H 0.20 1.16 8.06 -2.91 -0.02 1.14 16 Total: -1.00 -79.03 297.17 1.89 -77.14 By element: Atomic # 1 Polarization: 0.66 SS G_CDS: 1.10 Total: 1.76 kcal Atomic # 6 Polarization: -69.16 SS G_CDS: 3.17 Total: -65.98 kcal Atomic # 7 Polarization: -57.74 SS G_CDS: 0.28 Total: -57.45 kcal Atomic # 8 Polarization: -33.22 SS G_CDS: -2.60 Total: -35.81 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.90 kcal Atomic # 16 Polarization: 35.55 SS G_CDS: -2.10 Total: 33.45 kcal Total: -79.03 1.89 -77.14 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385228257.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.477 kcal (2) G-P(sol) polarization free energy of solvation -79.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds