Wall clock time and date at job start Mon Mar 30 2020 06:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81392 * 1 3 3 C 1.81404 * 103.00214 * 2 1 4 4 H 1.08999 * 109.53264 * 54.90309 * 3 2 1 5 5 C 1.53122 * 109.50183 * 294.80358 * 3 2 1 6 6 C 1.53115 * 109.15784 * 182.40648 * 5 3 2 7 7 C 1.53038 * 109.28226 * 57.65340 * 6 5 3 8 8 N 1.46849 * 109.52189 * 300.81795 * 7 6 5 9 9 C 1.46896 * 110.99858 * 185.83858 * 8 7 6 10 10 C 1.52997 * 109.47114 * 45.79213 * 9 8 7 11 11 C 1.53006 * 109.47127 * 179.97438 * 10 9 8 12 12 C 1.52997 * 109.47127 * 180.02562 * 11 10 9 13 13 C 1.50696 * 109.47242 * 180.02562 * 12 11 10 14 14 H 1.08004 * 119.99967 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00542 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99408 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00405 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.46785 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47025 * 119.99859 * 17 15 13 20 20 H 1.48498 * 109.46692 * 239.99831 * 17 15 13 21 21 C 1.46850 * 111.19619 * 61.74193 * 8 7 6 22 22 H 1.08999 * 109.47678 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47241 * 300.00312 * 1 2 3 24 24 H 1.09000 * 109.47373 * 59.99972 * 1 2 3 25 25 H 1.08999 * 109.52168 * 302.30607 * 5 3 2 26 26 H 1.08995 * 109.52101 * 62.49587 * 5 3 2 27 27 H 1.08998 * 109.50330 * 177.59784 * 6 5 3 28 28 H 1.09002 * 109.49942 * 297.66830 * 6 5 3 29 29 H 1.08999 * 109.45997 * 180.80585 * 7 6 5 30 30 H 1.08994 * 109.46356 * 60.83677 * 7 6 5 31 31 H 1.09001 * 109.47267 * 285.78924 * 9 8 7 32 32 H 1.09004 * 109.47041 * 165.79328 * 9 8 7 33 33 H 1.09001 * 109.46832 * 59.99999 * 10 9 8 34 34 H 1.08993 * 109.47194 * 299.99521 * 10 9 8 35 35 H 1.09001 * 109.46801 * 300.00272 * 11 10 9 36 36 H 1.09001 * 109.46998 * 59.99868 * 11 10 9 37 37 H 1.08996 * 109.46952 * 300.00302 * 12 11 10 38 38 H 1.09001 * 109.46832 * 60.00321 * 12 11 10 39 39 H 0.96999 * 119.99910 * 180.02562 * 16 15 13 40 40 H 1.09001 * 109.46278 * 58.27301 * 21 8 7 41 41 H 1.08997 * 109.46535 * 178.23864 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7286 2.2555 0.8405 5 6 1.7471 2.4018 -1.3102 6 6 2.1486 3.8793 -1.3277 7 6 3.6659 3.9926 -1.1635 8 7 4.0699 3.3722 0.1047 9 6 5.5007 3.5837 0.3619 10 6 5.8573 5.0461 0.0880 11 6 7.3474 5.2666 0.3565 12 6 7.7039 6.7291 0.0833 13 6 9.1716 6.9462 0.3472 14 1 9.7886 6.1231 0.6764 15 6 9.7270 8.1954 0.1683 16 7 8.9758 9.1975 -0.2331 17 14 11.5465 8.4642 0.4947 18 1 12.1649 7.1868 0.9316 19 1 12.2083 8.9342 -0.7488 20 1 11.7126 9.4852 1.5602 21 6 3.7372 1.9420 0.1258 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 2.2107 1.8884 -2.1525 26 1 0.6628 2.3180 -1.3834 27 1 1.8508 4.3261 -2.2763 28 1 1.6533 4.4007 -0.5086 29 1 3.9534 5.0440 -1.1612 30 1 4.1598 3.4830 -1.9908 31 1 6.0868 2.9381 -0.2922 32 1 5.7221 3.3443 1.4020 33 1 5.2712 5.6916 0.7422 34 1 5.6359 5.2855 -0.9520 35 1 7.5684 5.0273 1.3967 36 1 7.9338 4.6210 -0.2973 37 1 7.4827 6.9688 -0.9567 38 1 7.1175 7.3743 0.7375 39 1 9.3665 10.0763 -0.3593 40 1 4.2308 1.4420 -0.7075 41 1 4.0766 1.5040 1.0644 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385328606.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:40 Heat of formation + Delta-G solvation = -26.969609 kcal Electronic energy + Delta-G solvation = -17004.897771 eV Core-core repulsion = 14430.692135 eV Total energy + Delta-G solvation = -2574.205637 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.21416 -35.36560 -33.44628 -31.83063 -31.06328 -29.30390 -28.24165 -25.32446 -23.75181 -23.12579 -21.11708 -20.06996 -19.76352 -16.78977 -16.20228 -15.76673 -15.24110 -15.17702 -14.50512 -14.41486 -14.20655 -14.01644 -13.81965 -13.54942 -12.91035 -12.59572 -12.34698 -12.15795 -12.00681 -11.66665 -11.40851 -11.13876 -10.96909 -10.93944 -10.65006 -10.54477 -10.43414 -10.28927 -9.95593 -9.59849 -9.24867 -8.99095 -8.32984 -8.29697 -7.96407 -5.97411 -3.99383 1.36991 2.29140 3.32398 3.39707 3.44162 3.94885 4.40837 4.48347 4.53080 4.79045 4.80904 4.85640 4.95930 5.12532 5.30840 5.36920 5.37919 5.38802 5.41035 5.46374 5.60288 5.68676 5.71834 5.81677 5.88821 5.93563 6.11346 6.18780 6.27821 6.49430 6.80936 6.95421 7.05481 7.10348 7.23470 7.71754 7.87136 8.03721 8.46831 9.08345 9.64572 11.14040 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.059498 B = 0.002993 C = 0.002886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.492567 B = 9352.101655 C = 9700.945618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 S -0.267 6.267 3 C -0.046 4.046 4 H 0.095 0.905 5 C -0.115 4.115 6 C -0.114 4.114 7 C 0.044 3.956 8 N -0.535 5.535 9 C 0.058 3.942 10 C -0.120 4.120 11 C -0.109 4.109 12 C 0.021 3.979 13 C -0.519 4.519 14 H 0.055 0.945 15 C 0.055 3.945 16 N -0.896 5.896 17 Si 0.891 3.109 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 C 0.076 3.924 22 H 0.099 0.901 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.071 0.929 26 H 0.062 0.938 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.092 0.908 30 H 0.033 0.967 31 H 0.032 0.968 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.048 0.952 36 H 0.045 0.955 37 H 0.014 0.986 38 H 0.016 0.984 39 H 0.259 0.741 40 H 0.041 0.959 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.868 -15.982 -1.405 24.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.287 4.287 2 S -0.040 6.040 3 C -0.174 4.174 4 H 0.114 0.886 5 C -0.154 4.154 6 C -0.154 4.154 7 C -0.083 4.083 8 N -0.261 5.261 9 C -0.069 4.069 10 C -0.158 4.158 11 C -0.147 4.147 12 C -0.016 4.016 13 C -0.557 4.557 14 H 0.073 0.927 15 C -0.146 4.146 16 N -0.536 5.536 17 Si 0.719 3.281 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.210 1.210 21 C -0.053 4.053 22 H 0.118 0.882 23 H 0.095 0.905 24 H 0.095 0.905 25 H 0.090 0.910 26 H 0.081 0.919 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.110 0.890 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.032 0.968 38 H 0.034 0.966 39 H 0.069 0.931 40 H 0.059 0.941 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -17.452 -16.495 -1.049 24.037 hybrid contribution 0.577 0.847 -0.470 1.128 sum -16.875 -15.647 -1.519 23.063 Atomic orbital electron populations 1.23360 0.94086 1.06305 1.04959 1.86826 1.07449 1.11751 1.97960 1.23214 1.00193 0.92436 1.01603 0.88624 1.21912 1.00628 0.96581 0.96275 1.21625 0.96103 0.95386 1.02271 1.22279 0.95002 1.01158 0.89910 1.62004 1.18755 1.11697 1.33605 1.22242 0.85437 0.98154 1.01115 1.21827 0.98698 0.93869 1.01425 1.21600 0.92284 1.00744 1.00096 1.19091 0.96114 0.89549 0.96845 1.21327 0.94661 0.94926 1.44790 0.92713 1.25037 0.97907 0.96244 0.95397 1.69979 1.35408 1.01011 1.47214 0.86554 0.85561 0.78157 0.77850 1.19757 1.21053 1.21014 1.21754 0.92026 0.89547 1.01953 0.88216 0.90492 0.90475 0.91021 0.91939 0.91079 0.90979 0.89003 0.94833 0.94980 0.90680 0.91574 0.92233 0.93356 0.93639 0.96777 0.96608 0.93114 0.94130 0.89982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.79 10.47 101.05 1.06 0.27 16 2 S -0.27 -2.63 21.79 -107.50 -2.34 -4.98 16 3 C -0.05 -0.46 2.81 -26.65 -0.08 -0.53 16 4 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 5 C -0.11 -1.04 5.17 -26.61 -0.14 -1.18 16 6 C -0.11 -1.12 6.09 -26.65 -0.16 -1.28 16 7 C 0.04 0.53 4.85 -3.83 -0.02 0.52 16 8 N -0.54 -6.95 4.81 -234.67 -1.13 -8.07 16 9 C 0.06 0.83 5.27 -3.83 -0.02 0.81 16 10 C -0.12 -2.04 4.46 -26.73 -0.12 -2.16 16 11 C -0.11 -2.26 5.15 -26.73 -0.14 -2.39 16 12 C 0.02 0.55 4.97 -27.89 -0.14 0.41 16 13 C -0.52 -14.95 9.11 -34.44 -0.31 -15.26 16 14 H 0.05 1.54 7.74 -52.48 -0.41 1.13 16 15 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 16 N -0.90 -27.32 13.29 55.43 0.74 -26.58 16 17 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 18 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 21 C 0.08 0.88 4.71 -3.83 -0.02 0.87 16 22 H 0.10 0.56 8.14 -51.92 -0.42 0.13 16 23 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.08 0.46 7.23 -51.92 -0.38 0.08 16 25 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.06 0.49 7.05 -51.93 -0.37 0.12 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.09 1.20 5.81 -51.93 -0.30 0.90 16 30 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.03 0.46 8.08 -51.93 -0.42 0.04 16 32 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 34 H 0.06 1.00 6.21 -51.93 -0.32 0.68 16 35 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16 40 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.08 0.96 8.12 -51.93 -0.42 0.53 16 LS Contribution 331.81 15.07 5.00 5.00 Total: -1.00 -30.19 331.81 -10.60 -40.80 By element: Atomic # 1 Polarization: 3.03 SS G_CDS: -7.67 Total: -4.63 kcal Atomic # 6 Polarization: -18.25 SS G_CDS: -0.18 Total: -18.43 kcal Atomic # 7 Polarization: -34.26 SS G_CDS: -0.39 Total: -34.65 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Atomic # 16 Polarization: -2.63 SS G_CDS: -2.34 Total: -4.98 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.19 -10.60 -40.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385328606.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.827 kcal (2) G-P(sol) polarization free energy of solvation -30.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds